Array 1 978484-979851 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038860.1 Geobacillus kaustophilus NBRC 102445 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 978484 30 100.0 34 .............................. GCTGCGCCTTCCGCGACAGCCGACAAGCACGGAA 978548 30 100.0 37 .............................. ACTTTTTTCGGATATTCAACGCCATATTCATCGGCAA 978615 30 100.0 34 .............................. GTAAAAGTTTATACTATTGATAGACAGCGCTTCA 978679 30 100.0 38 .............................. ACCGTTGCCGTCAATTGTTTGAGTCGGCCAAGTCCTCC 978747 30 100.0 37 .............................. TGGGAGGAATTAGGGCGACCGGGGGAGTAGTTTTCCC 978814 30 100.0 37 .............................. GGATTACGTCGCCTATCGTGTTTTGTCTGTATTCTTT 978881 30 100.0 40 .............................. ATTTTGACGCTCTTGAGAAGATCGCGGATGTTTCGCGTGT 978951 30 100.0 36 .............................. TCTTGCAGGTCTTATCACTACTGATGGTTACATCGA 979017 30 100.0 35 .............................. TGTGTTTGTGTCCATTCTTCAATAGATAAAACAGG 979082 30 100.0 36 .............................. TGAAGAGAAGCTTGCCGCTGAGAGCGCCAGAAGCAA 979148 30 100.0 39 .............................. TGATCGCTCTGGCCGCAGTTAACTTATTAAATTTATCGA 979217 30 100.0 34 .............................. TGAAAATCAGCAGATATTGCAAAAGCTCGAGGAA 979281 30 100.0 39 .............................. GAGTAGTTCGTTCGCGATTCCATATAAACGTCTTGCCCC 979350 30 100.0 39 .............................. CGGGTTTTGTTGGTTCCGGAAAGTCGTACAATGCTACAC 979419 30 100.0 36 .............................. TGTGTCGTGGGGAAAAGAAGTACATTGAGCCGCGTT 979485 30 100.0 38 .............................. AAGATATTGCGATCAACGAGGCGGTCGAACTGGATAAG 979553 30 100.0 40 .............................. ACGGACGAGATGCCCGTAAACAAACCTGTTTTGGCTTTCA 979623 30 100.0 38 .............................. TCTTGTCCGGCTTCGAAGCCGAAAACCAGCCAAGATTC 979691 30 100.0 37 .............................. CCGTTTGACCTTTATAATATTTTGGCTGTTATCAATG 979758 30 96.7 35 ................C............. CGGAGTCGGCCGCTTTCTCCACGCGTTTCCGCCCA 979823 29 73.3 0 ......G...CG.....A..A.-GC..... | ========== ====== ====== ====== ============================== ======================================== ================== 21 30 98.6 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GTGATGATTGTGGAATTGAACTTGACAGAGATCGAAACGACAGTATCAATCTTTCGAGATATCCTGCATAGCGACTGGTACCGTGAGTTGCACGGGAAGTGAAGCCTTCGGAGCGTCAATCAAACGAGAGCAGTTTCGGCGAAATCGGACAAGGATCAAGCAGGGAATGAAGCATGGGATTGAACAAGGACGCCAAAAAGGATCGAGGAAGGGAAACCCGACATCGCGAAGGAAATGTTGATGAAAGGGTAGGATATCGACACGATCCACGAACTGACCGGGCTGCCGGCGGAAAAGATCGAACAGCCGAAGAAGTCAACCCGCCTTTGCATTGTCGTCGACCTCCAATCATGCAAAAAACCCGGGGGATCGACGACAATGGTTTTTGACGCTCCAAGCCTACAGCCATCACGATTGAAAGTCATTGACAGAATTTTTGAAACGTGCTATGCTGAAAATAGCTCCAAACCGAAAAGCTTGATGGAACAAGCCTTTTTGGG # Right flank : CCCTCTTCAATGTCACGCCATCGTATGAACGTCTTCCGTTTGAAGAAACCGGATGGCTGCACTTCCCCGATCGACCGCTTCGTTTTGCTTCGGCTGCTCATTCTTGCGCCGCTTGCTTTGCAGGAAGCCGCTTTTTTGTTTCGCACATGGAGAACGTTTTGGCATCTGCTTTTTTTGTATGGCCCCATTGATCCACCAGGCATGGTTGTTCACCGCCTTTCTTTGCCGCTGCTGCATTTCCTCAGTCCGATGCGATATACTTGACATGGGAACAATCACGCTTCTTTCTCGTTCACCGTCGTGTCGGCGGACATGCTGCGTTGGCGTTGGACGGTTTGAAAGAAGGCGGAGAAAAGCGACAGGGGTGGGATGGATGCGCCGCAAGCTTCGCGATCTTGGTTTTTCCATCGGCACGCTTCCGACAGGGGAGCGCAATCAAGTCACCGATGTGCCTGGGGTGCGGGTCGGTCATGTGACGATTCGGGAAGATATGAATGAGC # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 2624199-2622692 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038860.1 Geobacillus kaustophilus NBRC 102445 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================================================================================================= ================== 2624198 30 100.0 35 .............................. ATTTCCAGGTTCACTTGCCGAACTTGGTCGGATGT 2624133 30 100.0 37 .............................. AAATACAGCTCCGGGCTGATAAGCAACTTTCTTGTCA 2624066 30 100.0 37 .............................. AAATCCGAACAGTTCCTGCAACAAGTCGCATACGGCC 2623999 30 100.0 35 .............................. ATTGGCAAACGGACGAGTGACGGCCAGCGTAAATG 2623934 30 100.0 35 .............................. TTGTTTGTGTTCCTCGATCAGCTGACGGGCTGATT 2623869 30 100.0 38 .............................. TTCTTCCGATTTGAGCGCCTCTTTCTTTTCCATTTCTA 2623801 30 100.0 35 .............................. AATGGGGAAGCAGGGGAAGCGGCGGACATTTTGAA 2623736 30 100.0 39 .............................. AAAAATGTTTTTTGCCATATCAATCGCCAACTTCATTGA 2623667 30 100.0 35 .............................. GACGACGAGTTCCGCAAACGAGATGTGGAACTTGT 2623602 30 100.0 35 .............................. GCAATATCGCTAGCATTGAAGTCACCTTCTCCGAC 2623537 30 100.0 35 .............................. ATTGCTGCCCAACAAGCACGAACCGGTTGCCATTC 2623472 30 100.0 38 .............................. GTAACAGTTTCGCCGTTTTCTCCGGCAAGTCGGCTTCC 2623404 30 100.0 35 .............................. CAACAAATCGCCTACGGTCACGTCATCGGTCTTGA 2623339 30 100.0 39 .............................. CTCGCTTTCACATTGCGAGCGTCAAAATCCATTTTCACA 2623270 30 100.0 35 .............................. GTATTTTTGGAGCGTCGTAAATAACCCGCTCCCAC 2623205 30 100.0 34 .............................. CTGTAGATGAAAACAGCGTGGACGTATGGCAAAG 2623141 30 100.0 39 .............................. CCTAATGTCCGATAACAGCCTACCAATCCCAATCCGTCA 2623072 30 100.0 38 .............................. ACGACGATCATTCAGGATTTGAAGCAAACCGCAAAAGA 2623004 30 100.0 121 .............................. AGTTGTGAATATGCGTCAAGGCCATTCCTGTGCATGGAGTGAATCCTTTGACACATAGTACGATGACTGGCTTTTCATAGAAGAAGAAACAAGAATGCTTCTTCTTTACGCCAAAATAAAG 2622853 30 100.0 35 .............................. TATGCAGAAACTCAGCGCATAAATCAGAGTGATTA 2622788 30 100.0 37 .............................. ATCTGTTCAACAGTTAAATCACGTGGTACAGGAATAC 2622721 30 86.7 0 ...............G..G....C....G. | ========== ====== ====== ====== ============================== ========================================================================================================================= ================== 22 30 99.4 40 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : CCAACCCGTCCCTTTCCGACGATATCGTCCGTGTCGCCCGTTCGCCGATCCGCAAGCTCGGGCCGAACGACCGGCTCATCGCTCCGGCGACGCAATACTGCACACTATTTGGCAGCGTTCCTGCTGGTCTCGCCAAAGGAATTGCCGCGCTGTTGCGCTTTGATGATGCGAGCGATGCAGAAGCCGCCGCTCTGCAACAAACGATCGCACACCACGGAATCGAAGGAGCGCTTCGGCAATACGCGGGGCTTGAGAGTGCGCACCCGCTTGTGGCCGCGGTGAGGGAAGAGTACGGGAGAATGGAGAAAAACAAAAGCTGACCGCCTTTCAAATGTCGTCGACCTCCAATCGTGCAAAAACCCCGGGGGATCGACGACAATATTTTTTTGCGTCAAAATCCTACAACCAACACGGCTCAACAGTATTGACAGAATTTTTGAAACGTGATATTCTGAAAACAGCCAAAAGGGGAAAAGCTTGATTTTATGCGAATGGTTTGG # Right flank : GCTATACAGTACGGTACAACTTTTTCTGTCCCCGATGCAGGATTTTCACCCCCTGCTTGCGAATGGATAGAATTGAACACGTTCAAAGAGGGGTGATGGAATGGCTATTGACCACGACCGGTTGTTTAAAGAACTGATCCAAACGTTCTTCGAAGAGTTTCTTCTCCTCTTTTTTCCCGACATGCATGAACACATTGATTTCAGCCATTTGTCCTTTCTGTCCGAAGAACTGTTTACCGATGTCACGGCAGGTGAAAAATACCGCGTCGATCTATTAGTCGAGACGAAGCTGAAAGGGGAGGATGGGCTGATCATCGTTCATGTGGAGAATCAAAGCTACGTGCAACCATCGTTTCCAGAGCGCATGTTTATCTATTTCAGCCGTTTGTTTGAAAAATACCGCACCCGCATCGTTCCGATCGCTGTCTTCAGCCATGACACCCTCCGCGAAGAACCGTCCGTGTTCTCAATCGAGTTTCCCTTTGGCGACGTGCTGCAGT # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.36, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //