Array 1 854678-856840 **** Predicted by CRISPRDetect 2.4 *** >NC_013971.1 Erwinia amylovora ATCC 49946, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 854678 29 100.0 32 ............................. TTATTCATGAGCCTTTTTATCTTCGCGGCATG 854739 29 100.0 32 ............................. GTAAATAGCAAAATGATAAATAATTTATCAAT 854800 29 100.0 32 ............................. CTATGCAGAAGCGGAGGGCGGCGAGTGATGGA 854861 29 100.0 32 ............................. AGCATCTCGGGAACTGTGTTTTTTGTATAAAA 854922 29 100.0 32 ............................. AAGATGCTTTGACATTAATTATCTCCATAAAA 854983 29 100.0 32 ............................. CAAGCGATCAACCTGTTTTTCAGTAGGTTTAA 855044 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 855105 29 100.0 32 ............................. GATTGCGCATGAGCACTGAAATTGTTCACAGC 855166 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 855227 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 855288 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 855349 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 855410 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 855471 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 855532 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 855593 29 96.6 32 ...........A................. AGATTTGGCGGAAATGTCGGCGGAGATGCCCC 855654 29 100.0 32 ............................. AAATGTCCTGTGGCTCGGCCCGATGCTGCAAT 855715 29 100.0 32 ............................. GAGATCATTCTCATCCCTCATGTTTTCCAGGA 855776 29 96.6 32 ............................A ATTGTAAAATCCTCTCCGCCAAATTTGATTAC 855837 29 100.0 32 ............................. AAACTCTCGCATACATGGACGGAATTTAACGA 855898 29 100.0 32 ............................. ACGATTTGCCTGAAACCTCAACGAAGTTCGAC 855959 29 100.0 32 ............................. CTGATGGCGTCACGAGCCATACGGAATGTGAC 856020 29 100.0 32 ............................. CAAAAATTTGCGCATGTCATCTATCTTTTTTT 856081 29 100.0 32 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGA 856142 29 100.0 32 ............................. GTTACGTTGAATGTATCGTTGGATGTGATTAA 856203 29 100.0 32 ............................. TACATCGAACAATGCCAATTGTTGACGTTCTT 856264 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 856325 29 96.6 32 .............T............... GCTGTCTATCTGGGCTGCCTCTATCCAGCAAT 856386 29 100.0 32 ............................. ACTTCGGTGAGAATGTCGAATTGCCACCAGAT 856447 29 96.6 32 ............................A TTGAATCAGAGTCTTTCAGGGACGATGTTTTC 856508 29 100.0 32 ............................. TGAAGCAGCCAGAATCCCATCCGGCCTTTATC 856569 29 100.0 32 ............................. GCTTTTGTACCCTTTACAGTCAACGTACTGCT 856630 29 100.0 32 ............................. AGATTGAGATCTTATCAACGGACTCTGACGCC 856691 29 96.6 32 .................A........... TTTCTTCACACACAACGGTGAGGGCATTGTCT 856752 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 856813 28 93.1 0 ...........A.....-........... | ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.2 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGTCTTATTCGAGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGCGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GCCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCTTCAAGGTGACCATTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 867748-869731 **** Predicted by CRISPRDetect 2.4 *** >NC_013971.1 Erwinia amylovora ATCC 49946, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 867748 29 100.0 32 ............................. CCATTTTATGACAGTCTGGCGCAAAAACTGGA 867809 29 100.0 32 ............................. GAGATGCACTGGATATACCGACTCCTCACTGA 867870 29 100.0 32 ............................. GCTCGGGGGGACATGAGCTTGTACAAAACAGC 867931 29 100.0 32 ............................. TTTTTAGCAGCGTGACAGTTATGGAGCCGCTC 867992 29 100.0 32 ............................. ATTATAAGGATCACTTGCTAGGGCATTATATA 868053 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 868114 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 868176 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 868237 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 868298 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 868359 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 868420 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 868481 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 868542 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 868603 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 868664 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 868725 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 868786 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 868848 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 868909 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 868970 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 869031 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 869092 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 869153 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 869215 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 869276 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 869337 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 869398 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 869459 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 869520 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 869581 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 869642 29 96.6 32 .........A................... ATGATGGCGCTGATAGTTTTATTAGATGTCGA 869703 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 33 29 99.2 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : ATTCCTCTGATCGAAACGGTGCTGGCTGCCGGAGAGATCTCCCCACCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGATGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 879195-879523 **** Predicted by CRISPRDetect 2.4 *** >NC_013971.1 Erwinia amylovora ATCC 49946, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 879195 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 879255 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 879315 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 879375 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 879435 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 879496 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //