Array 1 3345720-3341917 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017269.1 Geosporobacter ferrireducens strain IRF9 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================ ================== 3345719 29 79.3 38 C...CT..T.......A.A.......... GATATTTTTCTTGGCTTCATTGTTATTCGGGCCCTTAA 3345652 29 96.6 36 C............................ ATTTTCAGGATAACACTTTTTGTAGAGGTACAATAT 3345587 29 100.0 36 ............................. AAAAAGAAGTGGATGACAGAATAAAGGTTTTTTATG 3345522 29 100.0 37 ............................. CTGGAGGGGTACTGCTACTGATGCAGGTGGTAATACC 3345456 29 100.0 37 ............................. GTTGCGTAAAAAAGTCAAGCCACTTCTGCCGAAACAT 3345390 29 100.0 37 ............................. ATACGAGTTCTGGTTCTGTATCTGCTTTTGTTACCCC 3345324 29 100.0 38 ............................. ACAAGTAAGCATCCATGATCTTATAGAATATGTTTGTA 3345257 29 100.0 37 ............................. CTATCTTTTTTACTATTTGTCTTACCAAGTTCTTTTA 3345191 29 100.0 37 ............................. TCGACCTGTTTACCCGGGAGCAATTTATCATGTTTCA 3345125 29 100.0 35 ............................. GAAGTGGATGCGTTAGACCTGATAATGCTTATGAT 3345061 29 100.0 37 ............................. GCAGATTTTTTCAGAATTGTTGTATGGGGAAAGACAG 3344995 29 100.0 35 ............................. CAATAGAGGCCATATGGTGCGAAGAAGGATATTCG 3344931 29 100.0 37 ............................. TGTATACTTTTTGGTGATTGTATGGTGTTTGTGGTAT 3344865 29 100.0 36 ............................. GAAACTCGGCAACCATACATAAAGGGAGCGAATATA 3344800 29 100.0 37 ............................. AATTATTATAAAAAATCACATAATTCCAATCTTTATG 3344734 29 100.0 37 ............................. ATACTTAGTGATATTGTTTAGTGTATCCCAAGTTGAG 3344668 29 100.0 36 ............................. CATGATGTTATGACTTTCTCAGAAGCTTCTGACTTA 3344603 29 100.0 36 ............................. TTTGAGCATAAAAAATCCTCGGTTCATTATCTTCCG 3344538 29 100.0 36 ............................. TTGATGAATTCACCAGTAATAATCTCTGTTGCACCC 3344473 29 100.0 36 ............................. GAAATATGCAGGATACCTCCTTCCTATAGAGAATTA 3344408 29 100.0 36 ............................. GCATCTGCAATGCGGATGTGTATCCATTACTACCCT 3344343 29 100.0 38 ............................. TGTACAAACTTCAAGAGCTAATTTTCCATCCTTATCCT 3344276 29 100.0 36 ............................. AAAACCATATCTGAAAGATCAAGAACCTTTCTATTT 3344211 29 100.0 37 ............................. TCTGGAAGGTGAAACCTGCTTGTGGGTCCTTAAACTC 3344145 29 100.0 39 ............................. TCTACAAAAGATCGTCCTTATCATAAGGTTAGTGAAGAC 3344077 29 100.0 36 ............................. TTGGCTGAAAATGTGACATATTCTAGTAGTTTTACA 3344012 29 100.0 39 ............................. TGGTGTATGAAATTTAGTTTGTTTAGGCTGCTGTTTAAT 3343944 29 100.0 40 ............................. CTGTAAACTCAACAGAGGGCTTCCTGCGCCGGCTAATCAA 3343875 29 100.0 36 ............................. TTGTTCGCTTCTCATGCCTTTCCCTTGCTATCGCTG 3343810 29 100.0 38 ............................. AAAATTCCAAATAAGAATATTTCCATCATAGATCATTA 3343743 29 100.0 38 ............................. TCATTTCCTTCCGAATGTTGTATATATTGATAATCCCA 3343676 29 100.0 36 ............................. AGATGGATAGAAGCATGGAACAGCAAAGGCCTAGGA 3343611 29 100.0 38 ............................. TTGCCTTTTTTTATGCTGACGCTTATGAGCTAGACTAA 3343544 29 100.0 36 ............................. GAAAAGATATATAAAAGAATTAGAAAAGACTCTATA 3343479 29 100.0 37 ............................. TTAATAGAATGAATAAAAAACTTAACAAGGTTTTAAC 3343413 29 100.0 37 ............................. AAAGACATTCAAGAAAATAAAGTTAATACAAATCTAA 3343347 29 100.0 36 ............................. TGTACGTCTTTATCCTTAACCTTATCAATCTTCCAA 3343282 29 100.0 37 ............................. TGAGTAAGTTAGAAAATGCATTTGCTAAAAAAGATTG 3343216 29 100.0 37 ............................. GAAGCTTTTGAAGCTACTGTAAAAGCCTTGCAAAATA 3343150 29 100.0 37 ............................. CAAGCCTGGAAGGAGGTGAATAAAGTGGAAGATATTA 3343084 29 100.0 38 ............................. GCAGAAGGAGATACTGATGAAATTCTCGAGTTAGCATC 3343017 29 100.0 37 ............................. ATGCCCTTTCCTCTGCCACTGCCCTTTCTTCTGCTTG 3342951 29 100.0 38 ............................. GAAAAGGTATGTAAGCTAGTTGAAAAGGTTGGATACGA 3342884 29 100.0 37 ............................. AATCGGTGCATGGTTCGCCTTTACGACAGGAGAACTA 3342818 29 100.0 36 ............................. GAATGAAAAGAATGTAAATAAAAAAGAAATATATAG 3342753 29 100.0 36 ............................. GTACCTAAGGGTATTGTATCCTACACTAAGTATCAG 3342688 29 100.0 36 ............................. TTATTTTCAGAATCACTCCAAATTGGAACAAAAGCA 3342623 29 100.0 37 ............................. GAATCATCAACTTTCGTCCGATCTCTCCCCATGCCGA 3342557 29 100.0 38 ............................. TTACCTTCCTATACCATACATAAGAGCTGTCGCATTTA 3342490 29 100.0 36 ............................. TGGGATAATATCATGCTTCAGTATGCTGCTATTATA 3342425 29 100.0 36 ............................. TTGCTTGTCATAATACCATTTCTCATTATGTTTATA 3342360 29 100.0 35 ............................. ACTTGGGGTCAATGTGGAAGCAGGGAGAGTTCCAG 3342296 29 100.0 38 ............................. CGAATAGATCGAAGAAGGTGATATAACCATCATCTAAC 3342229 29 100.0 36 ............................. TTTGCCTGCAAAATCCATGTCAATTATGTAGTATTC 3342164 29 100.0 36 ............................. TCTCCAATATCCACAGTATCCACATCCTTTACTTAA 3342099 29 100.0 36 ............................. CAGCCACATTTCAATAAGTTTGCTCAGATTACACGA 3342034 29 100.0 60 ............................. CCCAAAAACTAAAATAGCTGTATATATTCATTTTAGCCGATTTGCGTTGCTTTGAGAACT 3341945 28 75.9 0 G....A.A.....T.T......-....C. | T [3341928] ========== ====== ====== ====== ============================= ============================================================ ================== 58 29 99.2 37 ATTTACATCTCACGTAGTGCAGATAAAAC # Left flank : CTCTTTACAATTGCCATATCGTCGGGTAAGGCGTTGCATGACTTAAAGATTGACTGTACTTGAATCGGATTAACTGCCTTTTGAACAGCCTCCATCAATACTGGGAAAAATTCTTTTCTTCTGGTCTTTTCAATAATTTTCATACAGATCGTAAACGCTGATCCATTTTCTTCTACACTTCGAAAGAAGATTTGGCAAAATTCTTTGACCTTATTCGGATTTCCGATCATTCGCATATACATTTCCATCGGTTTTTTGTCTGTCTCGTCTAGTTGTTCAAGAAGCCCCTGTACTTCCATGTCAAAAAAATTTTGGTTCACTTTCTATGCCCCCTTAATATAATCCCTATTTAGATTATATTATATTGTTTTATATTTCTGCAAATTTTGGAACACATAATCTGGCTTTATTTGTAATTTTATATATATCCATCTATACAACCTGAATCTGCCTTTTTAGCCGGATAAGATAGGCAAACAGATCCGCCACTAAGATACCTC # Right flank : TTATATAATGTATGTTAATTTTGTAACAACACATTCAAATTCGAGCTTTTTCAATACATTTAAATACTTTCTAAAAAATAGTGGTTTACTGCAATTATAAAAACATATCATCAACATTCTTTTCTTCTCCAATGATATCCTTTGTAATTTGACTAGGTATTTTTATTTTATAAACATAGATCGAATCTTCATGTTTATTAATTTTTCTACTTAGTTCCATCAAACATTTCTCCAGTTTTCCTTCTGTTATTTCCCCTTCAAAAACAGAATTCTGCACCCATATCAAATACTTTTTTAAATGTTTGCGTACCTTATTTACTCTTTTTTCACCTACATCATAAGTCACTATAACAAACATTTTACCACCAAGCTTTCAGCGGTTTATAAATTTCATCGTCTACAAGATGTTTAATCAGCTTATAACACTCTAGCCGTATAAATGTTTTGTAGGATACTTTTCGACCTAATTTTCTGTGTGTAATGGTTGTCTCCAACTTTGC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTACATCTCACGTAGTGCAGATAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.40,-3.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //