Array 1 3240496-3239926 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXQO010000001.1 Escherichia marmotae strain RHBSTW-00263 RHBSTW-00263_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3240495 28 100.0 32 ............................ CAGCTCAACAGATCGTGGTTTTTATCTGTCTT 3240435 28 100.0 33 ............................ TGATACCGTGACACTCAATTCCCTCGCGAGGAA 3240374 28 100.0 33 ............................ CATCAGGGATGCCGCGCGTTTTTGCTACGTCAG 3240313 28 100.0 32 ............................ AAGCGCAATGGACGTCCCCGTCGCACATCCCA 3240253 28 100.0 32 ............................ ATCAACGATTGACCACGGCCCAAGCGCAATGG 3240193 28 100.0 32 ............................ GTCGAGCTGATCGACTTATGCCCCATCAGGCT 3240133 28 96.4 32 ...........T................ TCATCCAGCGTTTTTTCTCGGTGATCAAATGC 3240073 28 96.4 32 ...........T................ GTAACGTTATACGAGGCGAGCGCCGCAGATAT 3240013 28 96.4 32 ...........T................ TGACCGTATTTTTTCTCCCAGGTCTTTTTGCC 3239953 28 85.7 0 ...........T........T..TT... | ========== ====== ====== ====== ============================ ================================= ================== 10 28 97.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TACGTGTTTTTTATTCATGGCGGATCAATGCAAAAAAAGCCCGTACTTTCGCACGAGCTCTTCTTTAAAGATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGCTGCCTTACCACATGGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGCAAAACGGTCAAGAAGAATTTATTTAGATTGATTTGTTTGGTTACGCAATGAACACACGATTCATTCGCCCGAGATTATGGTCGTATGCGTTCTGATCAATTGTTTATCAAAAGCTACGAGGGAAATATGAGAGTGAAGAAATACCAATCGACCCATTTTTTTAGAGTGACATGTAACTCATTGATTTTGTTTATTACTATTTTGACGTCTCGAAAAAGGGTATGAACCTGTGATTTTGTGATTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTTCA # Right flank : ATCCATACCCAATATTTATTTTCTTCCTTAATCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCGTCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCAAGAACAGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAACGGTGAGATAAAC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3255733-3254743 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABXQO010000001.1 Escherichia marmotae strain RHBSTW-00263 RHBSTW-00263_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3255732 28 100.0 32 ............................ ATAACTGGAAAGTCGAGGGCTTAGGCAGCAGT 3255672 28 100.0 32 ............................ AAACCTCGGCGCAACGGCACCGGCCACCGGCG 3255612 28 100.0 32 ............................ TGCACCCTCAGCCGCGCCCGCGCCGCGTTGCG 3255552 28 100.0 33 ............................ CGCCAGGTAATGGCGCAGGGGTTGACGCTGCCT 3255491 28 100.0 32 ............................ TCCAGATATTTGAAATACTCTACACCGGCATC 3255431 28 100.0 32 ............................ GGAACAAAGACGCGAGCAAACTGGAGAGCAAA 3255371 28 100.0 32 ............................ CCACAGAGCTTGAGTTATGGGCTGCGTCTGTT 3255311 28 100.0 32 ............................ ACTAAATAAGTGGTGTCGTCGCTGCCGCCATA 3255251 28 100.0 32 ............................ TGCGCGGGCGTATCGCGGCACGTCTGCGCAAA 3255191 28 100.0 32 ............................ CGGAAGTTGCGTCGCGGCTGAGTCCAAACCGC 3255131 28 100.0 32 ............................ TAAAATCATCGCGGCACAATAATGCGCAGTCT 3255071 28 100.0 32 ............................ TCTTTGAAACCGCTGAATACGCAATGATTGTT 3255011 28 100.0 32 ............................ AAATATGTGGTGGAGAGATACAACAGGGCTAT 3254951 28 100.0 32 ............................ GCATGAAAAAAGCGTTCTCACTTTGGCGGGGA 3254891 28 100.0 32 ............................ GAAGAAAAAACAGTGGTACTACCGCCCCGCAG 3254831 28 100.0 32 ............................ TTCAATAGTGTCCGCAATATCGTCAACGGTAA 3254771 28 92.9 0 ....................T...C... | C [3254748] ========== ====== ====== ====== ============================ ================================= ================== 17 28 99.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCACGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCTCGCGTCATCCAGGACAACCTGAAGAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGTCAGGTCACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCACAAAGCGGAAGCAGCGCATTAATCTGGGGTCGTGAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCTCGTAAGAGGTTACGGATTTTTTTGTTTGTGAGGTGGGGCGGTAAAAAACCTATTTTTGAGGGCGAAGGTAAGTTATTGATAATTAATGCTGCTGGAAGGCAAGGATAAAAAAGGGGCTGGACAAGGAATTTTGCTGGTTTCGCTTTATTAACAATGGGCTAAGCGTGTAGTATTTGA # Right flank : TACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGTGACACACAATAACAATTGTGATAATTGCGACGAGAATCAATTTCTCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGATCTCAAAACCATTCTCCACTCCAGGCGTGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAATATGTCACCAGTGAAGGCAAGGAGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCATTGATGTTGGGGATGGGAACATCCGTTACTCAGGCGGCGATGCGTGAATTTGCCCATGCCGGGGTGATGGTGGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //