Array 1 171299-170870 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_QQIA01000002.1 Haemophilus haemolyticus strain M19155 M19155_HUY4190A134_cleaned_ctg_3387, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	=================================	==================================	==================
    171298	    33	 100.0	    33	.................................	ACTTTGCTGTTCATGAATACGAAGCAGGAAGTG 	
    171232	    33	 100.0	    34	.................................	CTAAACATATCTGCTGTTCGCTGTAACCAGCTTT	
    171165	    33	  97.0	    32	................................G	ATTTCATTAAAAACTGAATAAGCCATTATATA  	
    171100	    33	  97.0	    33	................................T	GTTGGAGTTTTTGTCAAATTTTAAAAATTTTGT 	
    171034	    33	  93.9	    34	..............A.................C	CACATTGATTGCATAGCTAATCTTCCCACATCCC	
    170967	    33	  84.8	    32	......G...C..C.C................C	AACCCAAAATAACCGCAAGATTTTGTTCGATT  	
    170902	    33	  84.8	     0	..T...G......C.C.....C...........	|                                 	
==========	======	======	======	=================================	==================================	==================
         7	    33	  93.9	    33	GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA	                                  	       

# Left flank :   CTGATGAGATAAATCATGTTAATGCTAATTACTTATGATATTTCTTTTGACGACCCAAACGGGCAAGCGCGATTGCGCCGTATTGCAAAACATTGCTTAGATTACGGCGTACGGGCGCAATATTCAGTATTTGAATGCGATGTCACGCCTGACCAGTGGGTTATGTTGAAAAACAAACTGTTGGAAACCTACGACCCTACATGTGACAGCCTGCGCTTTTATCATTTAGGCAGTAAGTGGCGTAATAAAGTGGAGCATTATGGGGCAAAACCAGCAGTGGATGTATTTAAAGACGTGCTTGTCATTTAGTTCGCTAACCTGTTGTTCTCATTAAAACCCTGATGGGATAGCGATCTTTATTTTCTTTAACAATTTGGATAAGTTAATCTATTTATATAACGGCAATGTGGCCGTTATACTGACTAAACTCCTTATCATAAAATCAATTAGCGAAATACAGTGTTTAAGACACTGATTTTTCTTGTTTTTTTATGTAGGGA
# Right flank :  ACCGCACTTTAGGATGTAAATACGATTAGTGGGGACAGCGGTCTTCGGGCAGTTGCGTATTTAAGTAAGGATGAAAGAAGACAAATGACTATGTCAGTAAATTGATAACTTAACATTTAAATACAAAAGAGCGGTCAAAAATACGATAATTTTTGGTCGCTCTTGTTTATACGATTTTAATTCAACTAATTTAAAAGATTAACCTGCGCTAAAAATTCTTCTTCTGTTAATACTGTAATATTTAGTTCCTGTGCTTTGGTGAGTTTAGAGCCAGCGGCGTCGCCTGCGATGACAAAGTCCGTTTTACTGGAAACAGAACCACTTACTTTTGCGCCTAGCTGTTGTAGTAATGCTTTTGCTTCGTTGCGACCCATTTGAGTGAGGGTACCGGTGAGGACGACGGTTTTATCTTTGAATAGGTTTTCACTGGCTTCTTTTACTTCCATGGTTTCCCAATGTACGCCTTGTGCGATTAAATCATCAACGACGGCAATATTATG

# Questionable array : NO	 Score: 5.52
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     F [8,5] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-3.70,-5.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [9-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,5.55   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
//