Array 1 34966-36649 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVWI01000056.1 Paenibacillus helianthi strain P26E scaffold_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 34966 32 100.0 35 ................................ AGTCGTAGCCCGATCCCATATGCGCCGCGCATGTG 35033 32 100.0 33 ................................ CCCTTGGCTCCAAATATGTCATATGGAATAACG 35098 32 100.0 35 ................................ TACCGTAGTCTGTCCACACATACAGGTCAGATGGT 35165 32 100.0 34 ................................ CTCTGGAATATCTGCATTGACCCATGTAAATGTC 35231 32 100.0 34 ................................ CGGACGGTGCACTCCCTAACGTTGTCAGTGTCGT 35297 32 100.0 35 ................................ ACAAATACCTAATGGCAGCAACGGGACTGACTGAC 35364 32 100.0 33 ................................ TTTTTGCAACTTATCTACTTGCAATTGCGCTTT 35429 32 100.0 34 ................................ TCTTCTTTGCCAGCGCCTGTAGTTTCTTGAACTT 35495 32 100.0 33 ................................ ATCAAAGCACGGTATTCTAAAGCTTTTTTTATG 35560 32 100.0 35 ................................ AGGAAATTCGATAGTAGAGGCAGGACTGTCCGGGG 35627 32 100.0 34 ................................ TCACCAGAAATGGCTTATGTTCCGTTGGATGATT 35693 32 100.0 34 ................................ TAACGTGGAGGTGCCAACGCCGGGGGAGTAAATA 35759 32 100.0 34 ................................ CACACCCACCATGATGCTTATGAGCCCGTAGGCT 35825 32 100.0 35 ................................ ATTTTTCAAGGAAGGGACCATTATCCCACGTGCAG 35892 32 100.0 36 ................................ AGTGGTGAAATGATGGATAGCGTCAATGAGTATTCC 35960 32 100.0 36 ................................ AGTGGTGAAATGATGGATAGCGTCAATGAGTATTCC 36028 32 100.0 35 ................................ ATCGGTTTGGGTTTGGATTCGTAGGTAAAGTTACT 36095 32 100.0 36 ................................ ATGATGCGGAATGTGTTCGTGACAGGAGATGTAAAC 36163 32 100.0 33 ................................ GAAAGCATCAAGCAGTCTTTTGTTAATTGCATC 36228 32 100.0 35 ................................ TGCAACCTCCAACGCGTTTCAGAATCGTTTAGGTC 36295 32 96.9 34 ..................T............. AAATTCGGAATAAAGAGAACTTGTCCCATTGATC 36361 32 100.0 33 ................................ GGAATTACACCGCCAGAAAAGCGGAGGACCTGG 36426 32 100.0 33 ................................ ATGGCCGAAAAGTTAAGAAAGGTAAGCGCAAAG 36491 32 100.0 33 ................................ TTGTGGTTACATGATGAACACATAGCCATCGTT 36556 32 93.8 29 ...........................C.C.. CAGTTAACGGTATCTCCAGTACCAGTATC 36617 32 90.6 0 ...........T..T.........G....... | C [36647] ========== ====== ====== ====== ================================ ==================================== ================== 26 32 99.3 34 GTCGCTCCTCACGTAGGAGCGTGGATTGAAAT # Left flank : CTGGTGTAGTTTTATCGATATTTCTTGGGTCTTACGGTATTCTAGTGCTGCTCGCAGTCGCTTTTGGCATGGTGACGAGCACGTATGTCAGGACCAAAGAGATTCATTCTGATCTCCAAATCATCAAGGAAAAGCTCGGAATCACGGATGAAGGTGAAACGGGCCTGAGCAATGAAGAGATAGAGGCGGAGCTGGAGCGTGAACTTTTGAAGGATCATTGAAAAACGGTGAGTTAAGGGATAAAAAGTGTAGTAATTAGCAAAAAGGTCTGCGTACTCGATGAGAAATGGCGTACAATAGACGATGTATAGTTAATTTTGAAAATGAATGCGTAGCCTGTGGTGCGAATGTATAGTACCCATGAAATCCCCGGGTTCTTCGCACCGGATTTATTACATTATTTGTATGATTTATGGATGAGTTTAGCGATTAATTTAAGAGTTAAGTGATTTTTAGGCTTTATTAATGGTCTTTTATCCTTTTTTTAGGCGAAAATCGCT # Right flank : TTAAATAAAACCAGTATATATGTAAACCCCAAAACCCCAAAACGTTTAAAAGCCCACAACTTACTGATAAGGTGTGGGCTTTTAGACGTTTTGTTGGCTTTGCCGAAATTTGTAAAGTAATGTTCAGAAGTGTTTCAAAAAATGTCGTATTTTTCCATGAGGGGATGATATGATGAGGGAAATAGAGTTTCTAAAATGTAAAGTTATGCGTCCCATAACAAATAAGCTGTCGTTTGAATCAGTTGATTATAAAGGAGGAGAGTTATGGATTACATTGCTCATATTCGGGAAAATGACAGGAAAGTCCAGACCGTCACTGAGCATTTATTAGGAGTACAAGTCTTAGCAGAGGGGTACGGTGAAAAGCTAGGAGTTAGCCATATTGCCGGACTCGCAGGTATGCTTCATGACATGGGCAAATATACAGAAGAATTTAGAAATTACATATTGCAAGCCGTTTACCATCCTGAGGCTCCGCCAAAAAGAGGCAGTGTAGATCA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCACGTAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.10,-4.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 2 44468-46687 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVWI01000056.1 Paenibacillus helianthi strain P26E scaffold_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 44468 32 100.0 34 ................................ TGATTTGCTGTACCATTTACGAAAGTCCATGCGT 44534 32 100.0 33 ................................ GATCATGCTGTCACCTTTGACAATCAGATAAAA 44599 32 100.0 36 ................................ TCCCTTCGGCACAACATCGTAAGTCAGGCTGTCCCT 44667 32 100.0 34 ................................ CTGTCACAGCGTTAAGACTGTGAAGGAAGACGGC 44733 32 100.0 35 ................................ CCACCAGCCACTGGTTACGTCACTCACTTTGTTAT 44800 32 100.0 35 ................................ CCGAAATCGTAGCCGTTACCGTACCCGTTACAGAT 44867 32 100.0 34 ................................ TCCGATCAAGGCGGCGACTATCTGGAATATTTAC 44933 32 100.0 34 ................................ CTTCATATTGATATCACAGGCAACGTAAAAATCG 44999 32 96.9 34 ...........T.................... ATAGCCGCCACCGCTGAGGTCGCAAGTTGCGAAC 45065 32 100.0 33 ................................ ATATTTAAAAAAGGTAAAAAAACAAGAGAATAT 45130 32 100.0 36 ................................ TTTCTTGCGCTGTGGCGGCTTCCACACTTCAAGGTT 45198 32 100.0 34 ................................ GGATCTCCAGGTATAACCTTCACCCCCGGCGCAT 45264 32 100.0 33 ................................ GTGGACCCGAAGTTGCTGCCCATACCCAGAACG 45329 32 100.0 36 ................................ TTTTTGGGTAACGATGAGGACTTTTATTTGATGAGC 45397 32 100.0 33 ................................ CGTATAGTAATCTACTGTATTACCGTTTTTTAT 45462 32 100.0 33 ................................ AAAAGAAAGTACTCGTCAGTGGCACAGTAGGAG 45527 32 100.0 34 ................................ TATCAATATGGACAGATTTACTATCCGCCTAAAA 45593 32 100.0 35 ................................ TCCGGATCGAATATCGCTTTCGCCGGGTCTTCGCC 45660 32 100.0 34 ................................ TGTAACTGCCCCAGACATACGTCCGGCTGTATCA 45726 32 100.0 36 ................................ ACTGGAAAGGTACCGTCATTCCGCCGCCGCCGTGCG 45794 32 100.0 32 ................................ GTTGCAGTCATCACAAGGCGCATGCTCTGCCC 45858 32 100.0 35 ................................ CGTGCCTGTGGGGGAGTATGCGACCTATACAGGCC 45925 32 100.0 35 ................................ CCCGCAAACGATACGGCGGCATTACCCGTCAGTGT 45992 32 100.0 35 ................................ TCCGCCTCCAAAGCTTTAATTTTAGCTCGCTTGAA 46059 32 100.0 36 ................................ GCCCACCGCAGTATTCTGCGGGTTTTCCGTATAGTA 46127 32 100.0 34 ................................ AATAAATGGATATGAGGATGCCAACCATTACTAC 46193 32 96.9 35 ...........................A.... AGGTCCTCTTTACTGATATCGACAGGCTTTTCGAT 46260 32 100.0 34 ................................ TTGATCATATCGCCAGATACTTTACCGTATCCTC 46326 32 100.0 34 ................................ ATGCAAGCATGATATATCTCCCCAGGTGTTGGAG 46392 32 96.9 34 ....................T........... TGGAGCTGGCTCTGTGTGCGCCGGATCTTTTCCT 46458 32 100.0 34 ................................ AGATATCGAGTAAGCGTCATAGGTGTTAAGCCCG 46524 32 100.0 35 ................................ TCGCACAAGGACTGGGGGTTGCCAGGGGTCAGCTC 46591 32 100.0 33 ................................ TTAAAAGAGCTCAAGAAACTCGCATTATCCAAG 46656 32 96.9 0 ...............................C | ========== ====== ====== ====== ================================ ==================================== ================== 34 32 99.6 34 GTCGCTCCTTACGTAGGAGCGTGGATTGAAAT # Left flank : CCTGGATGAGTATCCTCCATTCTTATGGAAGTAGGTGTATAAGGTGTTGGTGCTGATTACTTACGATGTTAGTACCTTAAGTAGTGCAGGTCAGAGCCGGTTGCGCAAGGTATCTAAAACATGCCAAAATTATGGGCAGCGGGTCCAAAATTCTGTTTTTGAATGTATTGTGGATGCAACACAATTTGCCGAGTTGAAAATAAAGTTAAAGGCCATCATTGATCAAGATGAAGATAGCCTAAGGTTTTACCAACTCGGCAATAATCATAAGAATAAAGTTGAACATGTGGGTATAAAAAAATCCATTGACCTGGAAGGTCCACTGATTTTGTAGTGCGAATGTATAGTGCACATGAAATCCCCGGGTCCTTCGCACTGATTTTATTACATTATTTTCTAAAAAATAAGCCGAATCCTAATTAATTGCTTATTTTTTTGAGATTTAAGCAGTTTTTAACGAAATAAAAGTATTTTCATCCTTTATTTGGGCTGAAATCGCT # Right flank : CATCGTATATAGCACTGAACTTTGATTTTCACCGGCCAAGTATCAAAAATACCGCACATCATGGTAAAATACTATGACTAGTACAGCAACAGTCCAATCTGAATTAGCAGGTGACCGTGTTGAGATTACGAGAATTCATGAACCCTTCCGATTCCTCGGCCTATCGGCAGGCGAAGTGGATCAAACGTTTTTTGCAGACTTATTGGCTTGTGATTTCCCTGCATTTTTTGGCCCAGCTAGGGGCATTTTGGTTTCTGCCGTATGAGAGAGGGGCGCATGAGTTTTATTTTGAGGTACTGCTGTATCCGACTCTGCTGATGGCAGCGGTGGTGATCATAGCCCAATTGATTGATTACAGCGCCTCTAAGTATTCGTTTTACTCTCTTTTTATGGCTGGCACGATTATTGCCATGATCATCATCCATCTGAACATGGATATCCGTATTATTGGAGCACTTATGCTGCTGCCTATTTTCGCTTCGGCGATTTTTTACAGGCTT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTTACGTAGGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTTACGTAGGTGCGTGGATTTAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.50,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //