Array 1 355184-357678 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSYT01000002.1 Haloferax sp. Atlit-24N P_contig000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 355184 30 100.0 37 .............................. AAAGACGTACTCTCGCTCGGCGGTCCAGTTCGGCGAC 355251 30 100.0 38 .............................. TCACTGCTCATCACCCAACTCAAGAGCCATGACTAACG 355319 30 100.0 36 .............................. CTGCGGCGACTGCGGCGCGGTAGTGTTTCCAGCTTT 355385 30 100.0 36 .............................. CATGTCCGCCTCGCTAACATTGTCGCTGTGGAAATA 355451 30 100.0 37 .............................. AACGGCGCGCGTGGGGGCGACGGAATGGGGACAGACA 355518 30 100.0 37 .............................. TCAAGCCGAGGACAACAATTCCACGGGTTTGAAGACC 355585 30 100.0 36 .............................. GGCTCCGTATGCTGGTCCGTCGCCGGAACAGTAGTT 355651 30 100.0 36 .............................. ACGAAGGAAGAACTCGCAGGCATCCTGATGGCGCTG 355717 30 100.0 36 .............................. CGCCCACTCCCGGCTGCGGCTGCCTTGGCTGTCGCG 355783 30 100.0 33 .............................. ACCACCTACCTCGAAGGGCAGGCAATCGACCTG 355846 30 100.0 38 .............................. CTGCGCCGTGACCGTCTTCGTCTGCATCGGTCCGTCGG 355914 30 100.0 38 .............................. TACTTATAGCTTTCCATAGAACACTATGGTTGGGAGTT 355982 30 100.0 37 .............................. GGACCCGGAAAACCTCGCGTTCTTCGAGTTGAACGGC 356049 30 100.0 36 .............................. ATCCTGAAAACTTAGACTCACAAGAATAGCAAACTT 356115 30 100.0 37 .............................. GCTCGTGACATCCGCCTCGAATGGGATGTCTAATGAA 356182 30 100.0 33 .............................. GAATGTGTCGGGTGCGGCTACCAGACGCCACTT 356245 30 100.0 37 .............................. GAAGCAGGACACCGGTCACGGCTCCAAGAAATACTGC 356312 30 100.0 35 .............................. ACATGGGGTTTAACGACGATCCAACCGCGGACTTT 356377 30 100.0 35 .............................. ATATCCCTCGGATCGGGAGAGATGATCTGAAAATG 356442 30 100.0 38 .............................. TTCTCCGAACCACGGGTATCGATGATCGTTTCATACTT 356510 30 100.0 38 .............................. TCCCACCACCTTGTCTTTGTGAGGACCATACGTTACCA 356578 30 100.0 35 .............................. GACGAGCGGAAGGACGACGAGGAGCTCGCGCCCTA 356643 30 100.0 36 .............................. CGCGTGCTGGCCGACCGACTCGCGCCCGACGACGCG 356709 30 100.0 37 .............................. TCGGCGGTGCGGGCGGCGCGTTGCTGAACGTTCAGCA 356776 30 100.0 37 .............................. AGACACTTGCGAGACTGGAAAGAGCGGCTCGACGGGA 356843 30 100.0 38 .............................. CAGTGACCATCAGGAGGTTGGTCCCAGTCACGTCGAAC 356911 30 100.0 38 .............................. GGTGGTTCGGTGGGAGTTCGTCCTCGACCCGGTGGTAA 356979 30 100.0 38 .............................. CCGCGTCGTCGATCCGGATGCGACGCACACGCTCGTTG 357047 30 100.0 37 .............................. GCGCGAGGAGTGGATTAACTGGGACCGCGGGATGATT 357114 30 100.0 36 .............................. ACGCGGTGGCGCTCGCCGTTCGTCAACGCCGCGAGC 357180 30 100.0 34 .............................. TCGAACGGGCCATCGACGAAGCAAAAGTCGAGTT 357244 30 100.0 37 .............................. CTTGATGCGGTCGTTCATCCGGTTGAGACACCGCAGA 357311 30 100.0 37 .............................. TGGGAGTTGCCGCGACCGAACGCGATGCCCTCCCAGT 357378 30 100.0 36 .............................. GACCACGACCCAGAACACCAAATCAAGGAGACGCAC 357444 30 100.0 39 .............................. CAGCCTGACCCGGACGTGCAAAGGCATCCTGCGATGAGA 357513 30 100.0 37 .............................. GTAGCCAACAACGCGCCGGACGAACCCCCGGATTTGC 357580 30 100.0 39 .............................. GTCCAACGTTGCTTGCTCCGTCTCGGTCGTGCTCTGAGA 357649 30 76.7 0 ...............G.A.C.AAG.....A | ========== ====== ====== ====== ============================== ======================================= ================== 38 30 99.4 37 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CCCGCTCGTCGGTGAGTCGCTCACCGACTTCCGCGGCGTCGTCTACGCGCCCTCCATCATCGACAACTTCGAGGCGCTCCGCGCCGGCGAGCGCTCGTTCGACGAGATTGCCGCGCCGACGATGACGCTCGCCGCCGACACGAACGTCAGCGACGCGTTCGACCAGTTCCAAGCCGAGGACCAGGAACTCGCGCTCGTCCTGCGGGACGGCGAGGTCGTCGGCCTCCTCACCGCGACCGACGCCCTCGAAGCGGTCATGGGCGAACTCGACGACCCGCTCGACTAGCGCTCTCGACGCTCCCCCTCGAATTTTTTCGGCGTGCGGCCGCGCCCCGCGGACGAACCGACCGCGTGACGACTGCCCGAGTGGTTCTCGACACCGCCAGTGACGACCCGACGTTTTCGTCGACCCCCCGGGGGTTTCGGGTGAATTGAGGGTCGACGGAAACACTCTTTTGAATTCGGGTGATACACGTCATTGTACCCGTGAATTCGGGATG # Right flank : AATCAGGGGACGGCATTGCGATGCCCGTATTAGTCAATCACGTACTGAAGTCGAAGAATGCCCGGGGTGGGCTCCGAACCCACGATCTCCGCATGTCCCAGGTGCGAGGCCGGCATGACCTCGCGGGGGGCGGAGGCTTCCAAGGCGTTCCGCACCGATTGTGAAACCCTATGAGTGCGGCGCTATGTCCAGCTAAGCCACCCGGGCTCAACTTCCCGTTGTGTGCTGGTTGTATTTAAGCTTCTCATCTCCGACGACCGCGGGACGGGTCACCACGGCACTCGATTCGAGTCATCACCCGCGGATTTATGTCCCAACACCGGGTGCACACACGCATGAGCCAACCGGAGATCGTCCAGTCCGTCCTCGGAGAGGAAGACGTGGTGACCCGCGTCCACCTCGGGGGCGAGGACGAACTGTTTGTAACTCCGACGCGGACGCTCGTCTATCGGGCCGAAGGCCTCCTCTCGGACGAGTCCGTCGACGAGTTCTCGCACGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.10,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 178046-175202 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSYT01000004.1 Haloferax sp. Atlit-24N P_contig000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 178045 30 100.0 36 .............................. GGCCATTGACGCCGCACGTGGCGACGACGAAAGCCA 177979 30 100.0 36 .............................. GTCGCGCTCGTTGTCGGCGCCGAGTGGGACGAGCAG 177913 30 100.0 35 .............................. TGCTCGCGGTCGGTCCGCTCCGACGACGTCTGCCG 177848 30 100.0 35 .............................. CCGGTGCGCTGGCGCGAGATGAGCATCTCGTGGAG 177783 30 100.0 37 .............................. TCCCGTATACGCCCACCACCGAACCTTCATGGATCCA 177716 30 100.0 36 .............................. GGAGGTAGTTCCGGAGGACCGCCCGCGAGTCGATGA 177650 30 100.0 35 .............................. GTGAAGTTTCAGCGTCGGATGTTGCGTCACTCATT 177585 30 100.0 34 .............................. AACGCACGGGATGAGTGACGCACTCGACCCACCC 177521 30 100.0 35 .............................. GTCGATGAGTCGCCGCACATCGGCCTCGGTGAGGT 177456 30 100.0 36 .............................. ACGGTGCAACTGAACGGCAAGGAACACCCCTACGGC 177390 30 100.0 36 .............................. GCCGAGTGCATCGGGTGCGGCGACCCGGTCGGAAGG 177324 30 100.0 34 .............................. TACTTATAGCTTTCCATAGAACACTATGGTTGGG 177260 30 100.0 37 .............................. TTTCTCCCGACCGTCGCGTCGCTCGGTTCGGATGAAC 177193 30 100.0 37 .............................. GTGAACGAATCGTCTTCGGTGTGGCTGAGTTCGACCG 177126 30 100.0 35 .............................. TGGCTGGTTGTCTCGACTCCCGGTTGTCGGTGGGT 177061 30 100.0 34 .............................. TCGGTACGAAGTTCCTCACACTCGGTGCGCAACT 176997 30 100.0 36 .............................. GTCGACAGTCGGCTCGGACTCCCGACGTGGCTCATG 176931 30 100.0 33 .............................. CCGCTCGCATGGCTCATAGTCCTCGGCGGGGGG 176868 30 100.0 35 .............................. CGGGCCTCACCTCCCGGGGTCAGAATCGATAGATA 176803 30 100.0 35 .............................. GGGTAGTGTGGGTTGGTCATTTCAGGTCTATTTTC 176738 30 100.0 35 .............................. GTCTTTTGTCTCGCGTTTAACTCGTGATCGTTCGA 176673 30 100.0 32 .............................. CTCGAACGGTGTGTGCCTGCGGGGGATCAGGG 176611 30 100.0 34 .............................. AGCTACGACGAGACCCTTAACGGCCGCGGAGACA 176547 30 100.0 35 .............................. ACTACGCGCCAGTCCCCGATAACGCCGCTGCGGAC 176482 30 100.0 37 .............................. GCGAATCACTTGACCACCTCCGAGAGGTGATGTCCTG 176415 30 100.0 32 .............................. GCGTATCCTTGCACGAATACGTTGCCATGCTT 176353 30 100.0 37 .............................. CCGCCACCGTATCCAGCGCGGAAGACGACGAGGTCGT 176286 30 100.0 37 .............................. GATTTGGACTCCCGCGCATCGTCATCGGTCGGGTGCA 176219 30 100.0 36 .............................. GTTCAGTGTTGACATGGAGTTGTTTTATTTGGGCGA 176153 30 100.0 36 .............................. GTTTCAGATGAGTTGTTGACAAGTTGATGGTGCCCC 176087 30 100.0 35 .............................. TGTCTGTCCGAGACTCCTCATACTGGTCCCAGTAT 176022 30 100.0 38 .............................. TAACCCCAACAGAATGCCCGGGAGAGTCACGAATAGCA 175954 30 100.0 38 .............................. GGCAGGTCGCTCAGGAAGTCAACGGCGACTCGTTCAGT 175886 30 100.0 34 .............................. GTCGACCGCTCAGTTGTCGCCATCGTCCTCACCT 175822 30 100.0 37 .............................. ACCCAGATGCTCACGCGCGGCGTCGTCGAGTGCAGTT 175755 30 100.0 35 .............................. TCCCGATTGAGATACTCCCGTGGTCGCCCCCATCT 175690 30 100.0 36 .............................. GCCATCGCGTCGCCCATCGCTCGGTCCTCCGACGAG 175624 30 100.0 37 .............................. TGAGGTCGACCTTAACGGAGGGTCCTCATGAGCGTCG 175557 30 100.0 35 .............................. AGTTCACCGGCGACATCGAGGATGGCGAGGACGGC 175492 30 100.0 35 .............................. ATCCGCGACGATGGTCCCCTCTCTCGTCTCGACCT 175427 30 100.0 34 .............................. TCCAGACCGGGCAAGCCATCGGCGATGTCGGGTC 175363 30 100.0 35 .............................. GATGGGCGTCCAGTACCACTGCGGGTCGCTGACGT 175298 30 100.0 37 .............................. CCATCCCGACCACCGACTCCAGTTCCTGCCCGCCCGC 175231 30 83.3 0 .......G.......G......A..A..T. | ========== ====== ====== ====== ============================== ====================================== ================== 44 30 99.6 35 GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : CGCTCGAACGAACCGTCGAGCATCCGAAGCTCAACCGCAAAGTGAGCTATCAGTACCTGATGCGGCTCGAAGCGTACAAACTCAAAAAGCATCTGCTGACCGGAGAGGAGTACGAGCCCTTCGAACGGTGGTGGTGAAATGTACGTCGTGATGGTGTACGACCTCGAAGCCGAACGGACGCACAAAGCGCTCAAGCTTGGGCGACGCTATCTGACGCACGTTCAGAACTCCGTCCTCGAAGGCGAAATTTCAGAGGGTGATTTAGCGACGCTTCGAAACGAGGTCGAAGACCTGTTGAAGCCGGGTGAGTCAACGATTATCTACGAACTGTCTTCTGACACACTTCTCAACCGCTCGGTCTACGGCGACGACCCGACCGACGAGAAACGCTTCCTCTGAGTTTCCGTCGACCCCCCGGTCGGCTCGGGTTACTGACGGTCGACGGAACTTCTTTATCGTAGTCACCCCTCAGAGAGTCTGTGTCCTCGATATCGGACATG # Right flank : GAAAACTCGTCGGGACGAAACCACGCGAAAGAAACAAAACCCGGCGCTACGCCGCCTCGGCGTACATCGCCACCAGCTCGTCCGCGTTCGACTGCCACGAGTAGCGCTCTTCGATGGCCGAGCGGTTCGTCCGACCCATGCGGACGGCTTCCGCGGGGTCGGAGACGAGTCGGGCGAGCGCCCGCGCCAGTTCCTCGGCGTCGCCGGGTGCGACGAGAATCCCGCGGTCGTCGGTGATGACCTCGGGGATGCTGCCGACGGGCGTGGTCACGATGGCGTTGCCGCCGGCCATGCCTTCGAGCATGGCGATTGGAAGCCCCTCGGCGTAAGTCGGGAGGACGAACACGGTTCCGCGGCTGATGAGGTCGCGTTTGTCTTCCTCGGAGAGGAAGCCGAGGTACGAGACGTTGTCGTGGGCGGCGGCGACCGCCTCGGCGCGGTCGGCGTGGGGGCCGCGGCCGCCGATGCTCACCACGAAGTCGAGGCCGGGCGTGGATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 189857-188441 **** Predicted by CRISPRDetect 2.4 *** >NZ_PSYT01000004.1 Haloferax sp. Atlit-24N P_contig000004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 189856 30 100.0 35 .............................. GAATATATGTATCGCCGTCTCGAATTGCGCAGGTG 189791 30 100.0 36 .............................. GAAGATACTGATACCGAAGTCGGCTAGTTCTAGACA 189725 30 100.0 36 .............................. AGGCTTCCCGTCGTGCTGTCTCGCGCACTCAGGGCA 189659 30 100.0 36 .............................. CGTCGTTTGGGGGGTCTCCGTGGATGCCGTGCCCAG 189593 30 100.0 35 .............................. TCCCGTACACGCCCACCACAGTACCCTCGTGTACC 189528 30 100.0 36 .............................. CTGGAGCAACTCGCCGAAGGGTGTCGTCGTCCACGT 189462 30 100.0 35 .............................. GGACTTCGACCACCCCGTCGAGCGTGAACCACGTG 189397 30 100.0 35 .............................. TACTAGCGACAAGCGTGTCAGCCGTCGGCTTGAGG 189332 30 100.0 38 .............................. TCGACTCATTCGGACGCGCGTTGTGACCGTTGTGCCGA 189264 30 100.0 35 .............................. GGCCAGTCGAACCGGAGGTAATCGTGGAGGAAATC 189199 30 100.0 38 .............................. GGACGCAGTAGCCGTTTGGCTTGCAATGCTGGATAAAC 189131 30 100.0 36 .............................. TTCGAGTGTGAAGGGGATATCCTCCAACGCCCGGCA 189065 30 100.0 36 .............................. AAACGTCGCGTATTCTGGATGGAGTTCGGGGCCAGA 188999 30 100.0 37 .............................. GAGTTCGTGACCGGGGTTCCGGTGACGGTGGCGACCG 188932 30 100.0 35 .............................. GACTGCTGGATGGCGAAGGCCTCGGAGAACATCGA 188867 30 100.0 35 .............................. CAAACGACCTACTCGCGGAGGTCGTCGGACTCGAC 188802 30 100.0 36 .............................. AAATCGCAAAACGCCGGTCAACTCGTTCCGAACGAG 188736 30 100.0 37 .............................. TGTCGTATCCCTACCGAGCGCCTCCATCGCGAGGAGC 188669 30 100.0 37 .............................. AGCACGCCGAAAGCGACGGTGGACGACGGTTTGGGCG 188602 30 100.0 35 .............................. AACATGCCGAACAACTGGAAGGAAGCCCTGTGGCA 188537 30 100.0 37 .............................. TCAACCTCACATTGGTCTGAACATTCATTGCTACATC 188470 30 90.0 0 ....................A.G......T | ========== ====== ====== ====== ============================== ====================================== ================== 22 30 99.5 36 GTTTCAGACGAACCCTTGTGGGATTGAAGC # Left flank : ACCTCCGTCGACCGCATCCGCGAGCGCCTCGTCGGCGACGTCCACACCTACGGCGGCCGCTCCACTATCGGCGACTGGTACCGGACGAACCGCGCGCTCCGCGAGCGCATCGACGACCTGCTCGACTCGGCGTGCGAGCGCCCGTACTTCGACGCCGACGAGATTCGCCGCCTCCAGCGCGAGGAGCGCACGGGCGAAGCCGAACACATGAGCGCCATCTCCGGCATCATCACCGGCGAGCTCTGGGTCCGCAAATACATCGACCGCGAAGGTCGCGGCGTCGAGGAAGGTCCCGTCGGTGCGGCGGAAGCCGAAGACGCGCCGCAACCGGCCGACTGAGTTACTCGAACCACTCGATGGACTGTCCAGTCGTGTGGAACTGCGATTCGTTTCCGTCGACCCCCCGGGGAAGCGAGGACTACTGAGGGTCGACGGAAACGTTCTTTTGAATTCGGTTCGTACGCGACGTTACGCCCGTGATTTCGGGACGGTTTCAGACG # Right flank : GAGCCCGAGTGGACGGCCGTGCTTCTCAGTGGCGAGGTTCAGCAGAAGCCGTTGTGTAGAGAAACTGAAGCGGTTCGTCAGTAGAATCACTCAAATATTTGCATGGGACCAACCGCTGTTAAAGACCAACAATACACAATCCTGTATAGAACTTAGATTACTTCAGAGATAACCGGGATTTTGAGTTCGGATATAGATAGGATACACAGATGTGCATAGATATAAGTGAGTGGGGTAGTATAGGTTAAAGAGGGCGCTGTTGACACGCCCGGCCAGAATACCAGTTCCACCGGACGTGTAAACCAACCCGGCAACCAGTAGTTTGACTCAGGGCTGCACGAGCAGGCAGTTGCTCGTTGCCCCTCGTGAGTCTTATCTGTTTGGTTGCTAGGTAGCCCCCTCCGCAACAACGATGAACCAAACAACACATACAAAACGAGGTAAGGTGTGTGTCACCAATGACCAGTTACAACTCAGTCATAAACTAATTAGCACGCTTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGACGAACCCTTGTGGGATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGATTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.20,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //