Array 1 2854-1506 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHB01000037.1 Gilliamella apicola strain Gris3-2 Gilliamella_apicola_Gris3-2_contig42, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2853 28 100.0 32 ............................ TTGCTTGAAATCACCTGCTCTTTTTAGTTCTG 2793 28 100.0 32 ............................ AATGGGGAAGTTGCAGCTTGCGATATTAGACC 2733 28 100.0 32 ............................ TCTTGTAAAGTATGTAAAAAAGCTTTTTCATC 2673 28 100.0 32 ............................ TTAGGCGTCGGTGCTACTGAATACGTTCCTAT 2613 28 100.0 32 ............................ TGCCTGGCAAATCACCGTATAGCATTACTAAA 2553 28 100.0 32 ............................ GACGATAGATTGCCTGATAATTTGAGTTTTAG 2493 28 100.0 32 ............................ TCGTAGGCGGGTGCGGTGTAGCACGGATTAGG 2433 28 100.0 32 ............................ TGATCAAGCAGACGAAACTTGGTTGATCCGAC 2373 28 100.0 33 ............................ AATAATCCGTTTGTGACTGGTTATCTTCTGCTC 2312 28 100.0 32 ............................ TTATTGGTTAGTTTTTTCCAGTCTGGTGTACC 2252 28 100.0 32 ............................ GATACTACCGAGAGTGGCTGTTTTATCTGCAT 2192 28 100.0 32 ............................ CATCAGGAACATAAATGCCTGTTTGGTGCTGT 2132 28 100.0 32 ............................ AAAATACTCACACAATGCTTTCATTGTCTTTA 2072 28 100.0 32 ............................ AATGTTTCGTAGCCCCCAAGTAAGTATTCTTT 2012 28 100.0 32 ............................ AACGCTTAATGCCGTTTCGTCGTGATGAGCTG 1952 28 100.0 32 ............................ TCTTATCGATACGGGACAACTTCGGGCATCAA 1892 28 100.0 32 ............................ ACTAAAAATACGGAGAGGAAAATAACTACAAA 1832 28 100.0 32 ............................ ATTTTTAAAAAGCCCAGAACTTGTTTGTAATC 1772 28 100.0 31 ............................ CACAACACCCGCAATCCCGAAAAAAAAACTG 1713 28 100.0 32 ............................ GCTACATGAGCGGTTTTATTGAACAAATTGAA 1653 28 100.0 32 ............................ AGATGCCGATTCCAAAGCTTCATCATTAACAT 1593 28 100.0 32 ............................ GTCGACAATAAAAGGTTATTTACGGTTCAGAC 1533 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 23 28 100.0 32 GTTCACTGCCGTGTAGGCAGTTTAGAAA # Left flank : AACAAAGAACCAAGTACATACTGTTTAAAATCCCAACCATCGACAGCACCACGGACTTCGTCGGCAATTTTCCAAATTTGTCGTTGTAGTTGATCGCGTTGTTGCGTTTCGGTAATTGATTTAGCGTTACTAGATGTCATATTTTTCAAAATTCCTAAATAAAAAATAGGTGCTGCCTAATTAGAAAGTAACTAATTTTTATTTTCATATTAGTCATTTTATAGCTACCTGTTATAGGTGCTATAGCATAGCTGATTTGTTGTTATTTTTCCATCTGGGGTGTTTATTAAAAACTCAGCCAATGGGTATTTTGAACTTTAAGGTTGGGAAATCTTAAAAAATAACAAAGCAACAAAATCTAAAAACAAAACCCTTTTTTTAGCTATATTTTAAAAGTTAATAAAATCAATAAATTAAATTTATCTCTAAAAAAAGGGTTTTTAAAACCTAAATACCTATTTGCCTTTTTACATACTATATTGATAGTATATTAGCTTCTA # Right flank : TATATAAAGATATGTCAGGGAGAGTTAGTGCTTCATGAAGTCTTTTTGTATTACAAACGGTTGAATGAATGGCCGTAATACGTTTATTCAAATTGATAATAATTTTCTTTATGATATTAACGCCATATCACTTGTTGGTGATACGGCGTTAATTTTATTTTATGAAAGTTTATTACAGTAGTTTAACTGACTATTTCCTATAACCAACAATTGATTCCTACACATCATATTAGTTGATTGATCATTATTTTGCCATTTTTGGGGTATCTATCTGCTTTACTAATGTAAAATCTATAGCTAATAATTTTTCTAATCGTGCAAGTATCCAATTATAACGATCTTTTAATGCATCTTCATGCCATTGTTGATTAAATGTTTTTTGATTAAAATCATCTAATACTTTTTGAGAAAGGCGAAATGCAGTCGTGTTATTAGTATGATTACCCTGATATACGATCATTTTGACATTGAAAGGATTATTACTAGCATCAATGTTTTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGTAGTTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 131867-132374 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHB01000028.1 Gilliamella apicola strain Gris3-2 Gilliamella_apicola_Gris3-2_contig34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 131867 29 96.6 31 ............................A TTTTACCGCCAGTTATTAATGGCGCTCTGAT 131927 29 96.6 31 ............................G ACCAAAATCCTAGCATCTTTAAGCGATAATG 131987 29 100.0 31 ............................. ATATTTATACATTATAGATTCTCGTCGTGGT 132047 29 100.0 31 ............................. TGTTCATGTTTTTAATAAACCCCAGTACGCT 132107 29 100.0 31 ............................. AAACTCGCATCAGTTTTCCCGTGGGGTCGGT 132167 29 96.6 31 ............................C TACATTCCTCGTTATGGTGAGCCTAAAGTCA 132227 29 96.6 31 ............................A TTAGTCGGAAGCTTGATATATTTTAGCGTGT 132287 29 96.6 31 ............................A AATCAGACAATCGCCGTCGATCCTGCTTTTC 132347 28 96.6 0 ....................-........ | ========== ====== ====== ====== ============================= =============================== ================== 9 29 97.7 31 GTTTACCGCCGCATAGGCGGTTTAGAAAT # Left flank : AGCTTATTATTTAATGGTTGTGGCATTAGTGGGTTTACTTACAGGCATAAAAATGAAAGAAACCGCAAACCGTCCACTCCGCGGCGCAACGCCCGCAGCATCAGACAGGTCAGAGGCAAAAGAAATATTATCGGATCACTTTGACTCAATAGAACAAAAAGTCGAAGATATAGAACAGCAGATCGAAACATTACAACAACAGCGTCAGAATTTAGTCGATCAGCATCCTAAGTTAGATTGATTTTTTTATTTTTGGTTTTGTATGTTTTGTTTAACATACAAAACCAAAATTTAATAAAATCAAAACGATATATAAGTAATTTCTAACGGTAAAATTGATCCATCATAGAAATAGCTAAAACACTGCCAACCCTTTTTTTTATTAATAAATAAAAGTAAATAAAAACAAAGTATTATGTAAGATCTTCAAAAAAGGGTTTTTGAAAACAGAAATCCTATTTGCCTTTTGCTAAACAGGGTTTATAGTATATCGGTTTCTA # Right flank : TTCTGGCATTATTATTTTTAACAGCATAACGTTTACTACTGTATAACAGCTTAATTTTAATTAAAATTATTAAATTAAAAAACAAAAAAGTTTGAAAGTTAACTGTGAAAAAACTATTTGCACATTAACTTACTATGATATTGTCGACGATATTCAGTGGGTGTTCGCTCTGTCTTTTTTTTAAAAATCCGACAAAAATAATTACTATCTTTAAACCCCGATGCTAGAGCAATTTCTTTTATATTTAGATCATAATCCTTTAATAGCGATTTTGCATATTCTAAGCGAATATGATTTAGATATTCATTTAGCCCTATTTTTCCCTCGCTTTGAAATAGATGTGATAAGTAATTGGGTGAAATGTAAAACATATTAGCTAAAAAGTCGCGTGTAATATCTTCACGAAAGTGAGTATCAATATATTGGCGAATGGCTTCATATAGGCAAGTAGTTTTGGATGATGTTTTGATATTGATATTTAACAAATCGAGTGTGTTGCT # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGCATAGGCGGTTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCATAGGCGGCTTAGAAAT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 11822-12148 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHB01000056.1 Gilliamella apicola strain Gris3-2 Gilliamella_apicola_Gris3-2_contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11822 28 100.0 32 ............................ TTGATTTAGATATAAAAAAAGCGACTGAAGTC 11882 28 100.0 31 ............................ ACTGTTCAAGGTTGGCTTTCTAATGAATCCG 11941 28 100.0 32 ............................ TCATCGAAAGCTGAGGGTTTGCTTTATCAACG 12001 28 100.0 32 ............................ GCTACATGAGCGGTTTTATTGAACAAATTGAA 12061 28 100.0 32 ............................ ATTCCCAAGCCTTTTTCGATCATTACTGAATG 12121 28 85.7 0 .................T..CA..T... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 97.6 32 GTTTACCGCCGAGTAGGCGGTTTAGAAA # Left flank : TCATCCAACAGCTCCTCTGAAAGCCCGTTGGTTTTATAATTATGAAATTGATAGCTTACATGATGATCATCAAGCCAAGTAAAAGCTTTTTTCATCGTGTTGCAGTTTTTGATACCGTAGATGATGTACATAGTAGGTGATCCAACATTGAAAATAATAATAAAGATTATAACAGTTATCGGCCTGATGCGGCAAACTAAAGGGATTTATTTGTTTTAATTCATATTAATACTCATATCTAATGTTAGTTGTTAATGCCAAATAGTCGCTAGTGAAAGCTTGAAATTTTAAATATTTTGGATGGTGAGTTAAGAAATGAATTTTTGAACAGATAATTTCACTCATTTTAAAAAGATCAAACTATTGCTAACCCTTTTTTTTAACAATAAATAAAATCAAATAAAAACAACACACTAAAAAAGCTCTAAAAAAAAGGGTTTTCAAAAGCAAAAATCCTATTTGTCTTTTGCGAAACAAGGTTTATATTATATCGGTTTCTA # Right flank : ATCAAAAAAGCCCTCAGACGAGGGCAGTGGATGTCTACCGACAGAATAGCTGGCTATGGTTATTAGCTGTGTTCAAAAATTTTATTGAACGCTTAAGCTAGTTGTCATTATCAATAGTATAAAATGATTATTAATTAACTAATTGCAGCATTTTTCAACAAAATAACTCATAATTCGATTATCGACGGTTAGTTCGGGATGAAATGAGCAAGTCAAAATGTTATCTTGCTGCGCCATTACACAATGATTATCAATAAAAGCTAGCTGATTGACTTGCTCACCAGCTTTTGCAATATATGGAGCACGAATAAATACTGCTGGAATTTGCTCACCAATAGTTGGTATATCTAACGTTGTCTCAAAGCTGTTAATTTGCCGACCAAAACCATTGCGTTCAACGCAAATATCCATCAAATCTAATAATTCGACTTCGTTATGAGTTGTCGTTTTGCCACAAAGCACTAGCCCAGCACAAGTACCTAAAATTCCTTTGCCTTGTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGAGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 1 21635-22147 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHB01000006.1 Gilliamella apicola strain Gris3-2 Gilliamella_apicola_Gris3-2_contig14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 21635 28 100.0 32 ............................ GCTATCTTGAGTTGTATTTGCGGCAGACGAAT 21695 28 100.0 32 ............................ TGAATGGCATCACAATAAAGATAATCTAATTG 21755 28 100.0 32 ............................ AAAATTGGGTTAACCTGTGTAACGGGTTGGCT 21815 28 100.0 32 ............................ AACAGGACAATACAACAAAATCTTAGCTGACC 21875 28 100.0 32 ............................ TATACAAGCCTCACTGTTTGGGTAGTCACGCC 21935 28 100.0 32 ............................ AGACCAAAACGGCAGGGACAAACCCAATGAAG 21995 28 100.0 32 ............................ TACAACCTTACTTTTTGGTGTTAAAAATTTAT 22055 28 100.0 33 ............................ AGACCGATCCACGACAACGCCCCTTTAACTTTA 22116 28 96.4 0 .......................T.... | TA,T,T [22136,22143,22145] ========== ====== ====== ====== ============================ ================================= ================== 9 28 99.6 32 GTTTACCGCCGTGTAGGCGGTTTAGAAA # Left flank : GATATTTAATTAACCAAATTGGGCGATTGTTAGGGTTATGCTGGTAAAACCATTCCAATCGACTTTCAACAGAAACAGACACTGTATCGGCAGTAACTTGTCGACCAGCAATTGTTGAATTATAAACATCAACAATAAATGATAAATCTTCTAATGTAGCATCGTGGTAAGTAATCATGTTTTTTGCTTTAAGTGGTTTAAAGTGAAATTATTGTAATTTTATTATTGTTTATTGGCAATAAAGCATATTTTTTATAGTGAGAAAAATAATCTAGGTAGTAATATTTCACATTTAAAATAAAATCAATTCACTAGATGAATTTTTTGAAAATACAATTTAAAAATTGCCTCAAAATATAAAATTTAGCTAACCCTTTTTTTTAACAATAAATTAAAATCAATAAAAACAAAATGTTAATAATATCTTGTAAAAAAGGGTTTTTGACAGAAAAAATCCTGTTTGCCTTTTGCTAAATGGAATTATAGTATATTGGCTTCTA # Right flank : AAAAATAGAAATTTCTGTATAACTGGTTGATTTTAATGAAAATAAAAAATTAAATAAAATCAATGCTCTACCTGAACAATTTTATGGGCGTAATACATCCCATAACATGGTAAGGATTATATGTTCGTTGGTTTTAGGTAATTCACTAATTCCTTGGTTTAGAAATTATCACCAATATTCATGATATTCACAAAAGTTAAGACTTACAAAACCTAACACCATATGCTAATTAAAAAATTGCATAAAAAACTAGCCAAGTTTTTTTAAAATGGCTATACTTTAACCTCCTTAAAGGAATAGATTATTAAACAATCAAATAAATATAAAAATTAAAATAAATCATTAATTTACTTGACAGGCGAACCGTAATACATTATCATTTTAGCCACCAGACATGGCAAACCTATGTCTTAAATTTATCAAATAAACATACTAGTTGGATTTTTAGCCCCGCCACGTTTATATTTTCAAAGTTATCTTCCAAATTATTATCAAAATTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGTGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA //