Array 1 30728-31119 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPJO01000042.1 Gallibacterium anatis strain 23K10 contig000041a, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 30728 36 100.0 37 .................................... ATAAATAGTACTCAAATTCAGAGTTTTCTTCTCTTGG 30801 36 100.0 35 .................................... TCCTGAAAGGTACGCAAGTTCCGCAGATACATCTG 30872 36 100.0 33 .................................... GCGTAATGATAAGGGCGGTTTCTATATGTTGGT 30941 36 100.0 36 .................................... TCGTGCAAGCTGCGGATCATAGAATCTTTTTCTTCC 31013 36 100.0 35 .................................... GTACTTGCTCTGCTCGTTCTTTCTGTTTTATATCG 31084 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 6 36 100.0 35 GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Left flank : AGAGGTTGCAAGATTGATTAAACAGGTGGATGACAGTGATGATTACCATATTGCATTGGAAAGTTTCTTTTTAAATCAACTTAGTATGTTGGCACCGGAGGAATAAAATGAAACAGTTCGTCATTGGTTATGACATTACAGATCCTAAACGGCTACAAAAGGTTTATAAACAAATGCAACATTTTGCGATTCCGTTACAATATAGTATTTTCTTGTTTGAAGGAACAAAGGAGCAGTTGCAGAAAGCTATTGCGCCAGTGATTGAAACAATTAATAATAAAAAGGACGACTTAAGAATTTATGAATTACCGAGTTATGGATTAAAAGAGCGAATCGGAAAAACAGTTTTGCCGGAGGGCATTGTGTTAACGGCGCTACCAACTAGACTATAATTTTGCTTAAATAATAATCATATTGGAGGTTAACTATGCAGTCATTTATACTTTTTGGCAAAGCCACTTTTAATTTATTGATTACTAATGTATTTTACGGTGTCGGGA # Right flank : CTTGCTAGCCATTATGTAATCACTCAAAGCAATGTTCTAACCTAGCCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 1 48-369 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPJO01000043.1 Gallibacterium anatis strain 23K10 contig000041b, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 48 36 100.0 34 .................................... CTACCTGATAACCTTTAGCAGGCCACCATTTCCT 118 36 100.0 36 .................................... GAAAAATAAAATATATCATCCGCCAGCTTCTCAAAG 190 36 100.0 37 .................................... TTAAAATAAATTTAAAAATTTTATTTTTTATTTTTGC 263 36 100.0 35 .................................... ATGCATCCGCATCCTGTGGCTTTATCTATACCGAC 334 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 5 36 100.0 36 GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Left flank : AAGGGATTGAGACATTGCGTCCATTAGTTACTGCAGGGTACAGGCGAG # Right flank : AAATTTAAATTTATTTTTAAATTTTTTATTTTTAGGTTCTAACCT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 49-910 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPJO01000044.1 Gallibacterium anatis strain 23K10 contig000041c, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================================================= ================== 49 36 100.0 36 .................................... TGGTTTAAGTCTCTCGGCTGCGTCATGTTCGTCTTC 121 36 100.0 34 .................................... ATAGCATCTTATTCCTCCTTAACCAATGGCTGTT 191 36 100.0 33 .................................... TATTCATACCCGTGAAAATCCTCAGCTGTACCG 260 36 100.0 37 .................................... GATTAATGTAACTATTAGCGATCAATTCATCAATGAA 333 36 100.0 35 .................................... AATAGGCTAGTTCCGCACTTACATCAGTTAAAAGT 404 36 100.0 35 .................................... TTCACGTTCAGTAAACAGTATTTTAAACCCTCGAT 475 36 100.0 35 .................................... CCGTCTTAGATTGGTTACTGAGTACCAGTAGCCGG 546 36 100.0 38 .................................... CTCTTCGTATTCGCCCGCAATGGATAGCTCTCCCCAGA 620 36 100.0 35 .................................... CCCACCAACCAGAATAGATTGGTTGGTGGGTGTCT 691 36 100.0 35 .................................... ACTAACACCGCTGTGATACTGAAGTGCTATAATGA 762 36 100.0 77 .................................... TTGCTCCATTTACAATATTCTGCCCCAATTCAAATAAGTTCTAACTGCCGTTTTATAAATTTTGTGGAACGCTTCTG 875 36 83.3 0 ...................C...........ACTTT | ========== ====== ====== ====== ==================================== ============================================================================= ================== 12 36 98.6 39 GTTCTAACCTAGCCCTGTTTTAAAAGGGATTGAGAC # Left flank : AAAAGGGATTGAGACGATAACATATTGCTATACTTGGAATCATCAAAGG # Right flank : TTATAAAAGACATTAATGATAATTTTTTAAGGAAATATCAAATTTGAAATTTTTCTATCTGTAGTAATGGTTATATATACTTAGCTTTGTTATTACGAAGTAATAATGAAATTAAATATTTAGTGTATAAATTTAGGAGAAATTTTATGAAAACAATTGCAATTATTTTAACTACTTTATTTGCGGTTACCGTTACTGCGCCTGTGTATGCCGGTTCTTGTGATTATTCTTGGCAAACTGCAAAAGACGGTTCCCGTTGCGGAGATCGTGCTGCAGACAGAAGACCGGGAGGCAGATAAAAGATAAAATGCATCTTTGATTATTTACTATAGTTATTATTTTCGCTTCGCCGGCATTTTGTTGGACGGGATATAATTATGATACCGGCTCTTATTTTGAAGTTGAACGTTATGATCATCAAGGATTGGGTGAAGGCCCGGTGGAATATTATGATTATAACAGCGGAGAATATAAATCAGGTTATTTAGATCTATTTCCCG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.28, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAACCTAGCCCTGTTTTAAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-83.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 28264-28631 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPJO01000057.1 Gallibacterium anatis strain 23K10 contig000053, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 28264 32 100.0 35 ................................ ATTTCTTGATTTTCCCTTACGTTACGCATATCTAA 28331 32 100.0 36 ................................ ATTAAATGCTCCATTGTTGAATCACAAGTAAATGTA 28399 32 100.0 34 ................................ ATATTTTCAGGCAAAACACTTTTTACTTGCTCAA 28465 32 96.9 34 .........C...................... ATCTAGTGAGTAACTATATTTAAGAAAAAGATTT 28531 32 96.9 36 .........C...................... ATCAACAATCCAGACGTTAGCCTCCGCCTTAGTTTT 28599 32 90.6 0 .........C.................T..T. | G [28629] ========== ====== ====== ====== ================================ ==================================== ================== 6 32 97.4 35 CGGTCGCCTTACGCGCGACCGTGAATTGAAAC # Left flank : CGTTAGGAGAACATTATGTTGATGCTAATTACTTATGACATCTCTTTTGATGATCCGCAAGGACAGAAAAGATTACGACAAATAGCAAAGTTGTGCCTAGATTATGGGGTGCGCGTACAATATTCCGTCTTTGAATGTGATATTGCTCCGGATCAATGGGTTAAACTAAAAACCAAATTATTAGACATTTATCAACCGGAATGTGACAGTTTACGTTTTTACCATCTCGGTAGTAAATGGCGCAAAAAAGTTGAACATCATGGTGCTAAACCGGCATTTGATATTTTCCAAGATACGATTATTTTGTGATCGCCAACCCATAGTTCTCATTAAAATAGTGTAAGGTTAGCGATTTATCATTGTTCTTTAAAAATCAATAAGTTAATAATTTAAAATATACCATTTTATTTTATGATATACTCATTCACCGCATATAAATAAAGATATTGGCGAAATAGAGGAGGTAAACCTTTATTTTTGCTAATTTTTTAGTATATGCT # Right flank : CAATACCAAATCATCTCAGTTGGCATACATCTCTTTTAAACAATTAAGATCCACTAAAAATGTCTTCATTAATAATTACCTAACACATTCAAAAAATCCGCTACTGTGTGAAATGAACCAAAAATCAACAACAAATCCTCTTTTTGTGCCTTATTTAAAGCAATATCTACACCCTGTAACATTGAATTAACCGCCTGGCTTTCTAATAAATCATTATTTTTTTCTGCCACTAACTGTAGCTTCAGTTGTAATTCAGTGGCACTTTGTCCTCTTTCGCCATCTAAAGGAACACAAATCCACGCTGTAATAAAAGGTAACAATGGTGTTAATACACCTACGGCATCTTTATCCTGCAAAATACCGCAAATAGCATAAATATGACGATAATTTGCTTTCTTTTGTGCTAATTGTGTTGCTAAATAACGTGCCGCGTGTGGATTATGTCCAACATCCAGCACAATTTGCGGTAAATTTTTGCCTTCTACATTAAATCGTTGAGC # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:0, 3:3, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGGTCGCCTTACGCGCGACCGTGAATTGAAAC # Alternate repeat : CGGTCGCCTCACGCGCGACCGTGAATTGAAACAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : NA //