Array 1 13039-13599 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGDL01000014.1 Faecalicatena orotica strain NLAE-zl-C242 Ga0104394_114, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 13039 32 100.0 34 ................................ CTTATATTATATCCTATCATAATCATTCGCTCCT 13105 32 100.0 34 ................................ CGATATCAGCTCATTAATGAATGACGGGATCAGA 13171 32 100.0 34 ................................ GTTAATATCTTTTCCGGCATGCCCCATGATTTTA 13237 32 100.0 34 ................................ TTTCGGACCGCCAGACAGATGTCTTGATCTTCTG 13303 32 100.0 33 ................................ GGAGTTGAGGGATCATATGATTATACAGGTTAA 13368 32 100.0 34 ................................ TTCCCCTTTGCGTACAAACCTATACAAAGATTCC 13434 32 100.0 35 ................................ ACATCACCAACTGCATTGTACCGGAACCGTACACC 13501 32 100.0 35 ................................ TATGTATGTACTTAATAATATCATCAACAAGTACA 13568 32 90.6 0 ...........C..............C...T. | ========== ====== ====== ====== ================================ =================================== ================== 9 32 99.0 34 GTCGTTCCCCTTGTGGGGACGTGGATTGAAAT # Left flank : AAGGGTATAAGGAATAACAGAATATATATTTAACAGTCGAGGGGATACAGCTATGGGCTTAGCATAGGGTCGATGCTCCTTGATGAACATGAGCCGCTGGTACATAGTACCCTTGCCACAGGTGGCTTTTAATGAACTGATGCGGTTACTGTCACACCAGAAGGATGTGCACAGTAACCGGGAAGACAGGTTTACGAGTGGATATTGTAATTTAAGGTTGTATTGGAGATGGAAAAGGGATAAAATTTAAGGAGAAGGTAGATTTTTCTATAGAGGAATTGTGGATTGTAATTAGGAGAATTGCAGTTGACCAGATATTAATTATGTGGTGCGAACCAGAAGTGAACATAAAAACACTGGGGGATTCGCACCAGAAAAAATGCACAAATTGAGTGTGCCTGTAAATAAAATGAAGAGAAAATGAGCGTAAAGTAGATAAGTTAATCAGATGTTTAGGTGAAAATGACTAAATATTTGGAGAAGAAATTGTCTATTTTGCA # Right flank : TTAGATGGAGGTGCCTTATGAACCGTTTATTTCTCAGCTTAACAATAGTTTCACTGTTAGTTTTAATGATTTCTGGTATTGCTTTTTTAATAACGGGGATATATCATCCAATTGCCGGATTGAGTCTGATTTTGTATATGGTGTCTCTTGCCGCGTACCAAAAGACTAGAGCGCGTTAGATAATTCATTGTACACGTCTGACCGCCCCACTTCACGCCCTATTTGAGCCAAATTTTATCAACGTAGAACCACTACGCCTCAAAAATTCGGCTCAAATATCTCGCGAATTGGGACAATCAGCCGTATACATGATTTATCAAACACGCTCGAGAAGATAAGCAAGATTCTCCAGTATTGTGGCCTGTAGTTAATAACATGAAAATGTGGAGGAATAATGAACTATAAAATAAGGGAAATGAGAAAAGATGAGTATCAATATCTTGATGATTTTCTATACGAAGCAATTTTCCAGAGAGAGGGAGATGATCCTGTCCCCAGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCCTTGTGGGGACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.90,-8.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : NA // Array 1 10762-11126 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGDL01000021.1 Faecalicatena orotica strain NLAE-zl-C242 Ga0104394_121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 10762 32 100.0 33 ................................ ATCCTGCTTTTTACATCTCCAAAGTTGACATCC 10827 32 100.0 33 ................................ TTGATTTTTTTGCATAATAAAAGACCGCTTATC 10892 32 100.0 34 ................................ ATATATAGTTGACCATCCTGCATATAGATTCCTT 10958 32 100.0 36 ................................ CTCTCGCCGTGAATACACCAACTCCACACCGTCACC 11026 32 100.0 36 ................................ AAACTGGTCTGGGGCATATCCCATGAAATGCGTGTG 11094 32 93.8 0 .............C...............G.. | C [11122] ========== ====== ====== ====== ================================ ==================================== ================== 6 32 99.0 35 GTCACTTCCTGCGTGGAAGTGTGGATTGAAAT # Left flank : GGCAATGAGAGTTTCGAAAAATTCTTTGAAGATTCACTTGTTAATATGAACAGAGTGCCACAAGCACTTAAGGTGATGGCCAACTGGGAAAATAGACCTGATAATGTCAGATATCCGTTTGGAAAGGATGAATCAGGAGCTGATCAAGGTAAAGAAAATGCCAGTGGCTCCCACCAATGGTTTACCTTTAATAAAGGGAAAAATGATTTGCATCATAACTTTATCAAGGTTCTACCTAAGGCAGAGGAAGATATTGATAAAAATTTATGTAGGGAAAAGGCACTATATGATTTAACTAAAAAGAGGAAATGAATGTCAGGTGCGAATGTGAAGTGGACATAAATTCCCCAGGAGATTCGCACCTGATAAAGTGGGGAAAATGTAGTAAAGAGGGGAGGAAATAAGGGGGAGAAATGATAATGGGTTGTAATATTGATAGAAATAGTATAAAATATGGTAGAAAAGCATAATTATAGATGGAGATATTGTGCAATTTTGCT # Right flank : TGAATAATAATCTTTTAGAACTTCAATTTGATGAAATCCTGTCTGTGTCAATTGCACAGCATCATCCGGAGGCAAGAAAAGGGAATCTCTTTCCTATCATCATGGATATGAGCTATGTTTATCCGTTGCCGGTATTCTATTCGTACTGTATGCAGCGAAAAGTCATTAATACCATTGATTTGAAAAAGAGAATTAATGATTTTTTCCCGTGTACTATTATTGGGGAAAAGGGAACATCCAGAAGTACGTTAACTATACCAGTATGCAAACTGGGAAAAAAGCGTACTCTCCTATTGGGTGGACTGTGCCATGTTAGACAGGCCTATTTTTGAAAAATTATTTTTATCATTCAAATCTCCGCTTTATGCGCAGGATTCTTTTTTATTTTTATTTGACCTGCCTAAACTTCAGCCAGAAATGCAGATCCTTCTGTATGATTATCTGGCAGAGAGGAACTGCAAAGATGTAGCTGCAGTGAATGAAAATAGTGGTAATTCTGA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACTTCCTGCGTGGAAGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 46541-46907 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGDL01000020.1 Faecalicatena orotica strain NLAE-zl-C242 Ga0104394_120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 46541 32 100.0 35 ................................ CTTATGATGGATTTCAGGCCACACTCCATCAAGGC 46608 32 100.0 33 ................................ CCTTATGGAAGTACAACTCCGTATTCTTGCGGG 46673 32 100.0 38 ................................ ATTCGGAAAAACTCTGCATCCGCTCCTTTAGTTGGCTT 46743 32 100.0 35 ................................ TTGATTGCAACCGAGAATTTTTGCCGCCTCGCCGA 46810 32 100.0 34 ................................ TATGCGTCTGTGGAATGTATTGATAGGAATCTAA 46876 32 90.6 0 .............T......A..A........ | ========== ====== ====== ====== ================================ ====================================== ================== 6 32 98.4 35 GTCGTTCCCCTCGCGGGGACGTGGATTGAAAT # Left flank : TTGAGTTGGGATAAAACAAAGAAGAGATAACTTATTAATATATCTATTAAAATATGGTATTATTAAAAATAAGGAACAATCACTTATAGAAGTTTTTTTATCATTTTACATAGCATGGGGGTATGCAATTTGGAGTATTTTTTATGAGCAAGGTTAATGTTTACTAGTTTCATTTACCATTAGCAATGAATAAATTCTAGATAATGCTCAATGTGTTATGTGAAAATCAAAATCATCTGATAATATAGATAGAGAAGCAGTCTTCGGTATTTTTAACTGGAAGATGATTATAAGGTGAGGATAGAAATTGATTTGACATTAATTATTTAGTGCGAACCTGAAGTGAACATAAAAATACTGGGGGATTCGCACCAGAAAAAATGCACAAATTGAGTGTGTTTTTAAATGAAAGAAAGAAAAAAGAGCACAATGTAGACAAACTATATTGATATTTAGTTAAAAATGTCTAAATATCTGAGGTGGAAATTGTCTATTTTGCA # Right flank : TGAATAAAGGGGATGAGTCATCAAATGAAAAAGTTAAATTACAGGAAGGAGGAAAATGTATGGGGATTGGTGTGAAAGTTAAAGTGTGGGGGGATTTTGCCCTATTCTCTCGCCCAGAGATGAAAGTGGAAAGATGTACTTACGATGTCATGACACCTTCGTCAGCTCGGGGAATTTTGGAAGCCATATACTGGCACCCGGGATTAAGGTGGATCATCGACAGGATTTATGTGAACAAGCCAATTAAGTTTACAAGTGTGAGGCGAAATGAAGTAAAAAGTAAAGTCTCCTCGAACAATGCTCTGTCGGTATATAATGGAGGGGAAAAACCTTTATTTATGAGCAGCAAAGAAGAGATTGTGCAGAGGGCATCATTGCTTCTTCGTGATGTGGAATATGTCATTGAGGCTCACTTTGAAATGACTGACAAAGCGAATGAAGGTGACAATCCGGGTAAGTTTAAGGACATTATGATGCGGCGCCTGAGAAAAGGAGAATGT # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCCTCGCGGGGACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : NA // Array 2 54292-54650 **** Predicted by CRISPRDetect 2.4 *** >NZ_QGDL01000020.1 Faecalicatena orotica strain NLAE-zl-C242 Ga0104394_120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 54292 32 100.0 33 ................................ CGTTACCGGTTACCGCTGCCGTAAGGCCTGCAA 54357 32 100.0 34 ................................ CCACTCTGTCGAGCCATCTTGAAGTGTTGTATTC 54423 32 100.0 33 ................................ TTATGCCTGTGATCGCTGCCGGACCGGACCACT 54488 32 100.0 34 ................................ CCACTCTGTCGAGCCATCTTGAAGTGTTGTATTC 54554 32 96.9 34 ...................T............ CGATAATCCAAAATGTCTCATCAGAAAGGTCATA 54620 31 90.6 0 ........T.............-.......G. | ========== ====== ====== ====== ================================ ================================== ================== 6 32 97.9 34 GTCGTTCCCTTCGCGGGAACGTGGATTGAAAT # Left flank : CTGACTCTGGCCGAGAAAGCAAGTCTTGAAGAAGCACTTGCAGACCCGGAAACAATCCCACATGAGGCTATTAACTGGGATTGATAGAGCCGCCGTAATGGTGGCTTTTTCTGAACTTTGATTTATTTAGGGGCCAGTAATTCGATTTATTCTGTCATAAACATAGGTTTTGACAGTGTCGTTCCCTTGTGGGGACGGGACTTGTAATTTATAATAGATGTAGAGCTTAACAGTCTTTGGTATTTTTAATTGAGATGTAACTATAAGGTTAGTGTTAAACATATTGGTGCGGAGGGACGAATAACATTTGACGAGATATTAAGTATGTAGTGCGAACCCGAAGTGAACATAAAAACTCTGGGAGATTCGCACCAGAAAAAATGCACAAATTGAGTGCGTTTGCAATTGAAAAAGAGAAAAAAGAGCGCAATATAGACAAGTTGCTCTGATATTTAGGTGAAAATGCCTAAATATTAAGGGTGGGAATTGTTTATTTTGCA # Right flank : TTAAACAAACTAAGCTCTCGGCCAAACCCCTATATAGCAGGCAGTTCCCAAAAGATGCTAACACAAAAAATACTTCGGGGCATATCCCCGAAGTATAAATCATAATCTGGCTATAAAAGAACCGCCAAAAGATTCCATTGCATGCTATTGATTCCCTATTGCCCGGTATTTACTGGGTGCCGTCCCGAAATGTTTCTTGAAAAGCTTGCTGAAGTGGTAGGCGTCGTCATACCCGACCATAGCTGCCACATTCTGTATACTAAGTTCCGGAGACTCCTCCATCAGTTCCCGCGCTTTTTCCATTCGAAGTTCGATCAGATAATTAATAGGGGTATCACCAGTCTCACTTTTGAAAATTTTGGAGACATAAAATGTACTCAGATACATGTTCTTAGCGATTTGGTCAAGCGAGATTTTTTCGTGATAATGTTCATTAAAGTAGCGGATCATCTGTTTTACGACGTATTTCTTGTTTGGAGATTCGAAGATACAGCCATTTT # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCTTCGCGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-5.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //