Array 1 217219-218194 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHPU010000002.1 Synechococcus sp. PCC 7002 NODE_2_length_558344_cov_269.730961, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 217219 36 97.2 37 A................................... AGACGAACTCTCCGTTCCCATCGCTGATTTGCAGGTT 217292 36 100.0 35 .................................... ACGTAATCAACCTGGGGCGAATAATCTTTCATAGG 217363 36 100.0 37 .................................... TGAGGCGTTGAATGTTGTTGTTGTTCTTTGATTAAAT 217436 36 100.0 36 .................................... GGAGAATGGAGAAAGAGAACCACGCTTCACAGTTGA 217508 36 100.0 35 .................................... TAATGGGCAAGCTCGTGGGTTTCTTCTTGCCAGGA 217579 36 100.0 38 .................................... ATGGGGAGCTGCGGGGTATTTTTCACCCATTCCCAGAA 217653 36 100.0 35 .................................... CAGAGGAACTTCCGGTGGATGTCCTTGCGGAGTAC 217724 36 100.0 36 .................................... GGCGGCACTTGGAGCAGCTGTGGCAGTGACGGCAAA 217796 36 100.0 36 .................................... AGTAAATCCTCGAACATTGGCTTAGTATTTGAGTGT 217868 36 100.0 38 .................................... GCGACCAGGGTGCTGTAATCCGTTTCGTTTTTTAAGGT 217942 36 100.0 36 .................................... ACTTTCGAGAGGGCGTTAGCAATACAGGTTCTTCAG 218014 36 100.0 37 .................................... GACGATTGAGAGATAAATGGCTACGGAATTATGCCCA 218087 36 100.0 36 .................................... GGCGGCTGTGTTGGCGTAGATCCAGAAAAACTTAAT 218159 36 94.4 0 .......G............A............... | ========== ====== ====== ====== ==================================== ====================================== ================== 14 36 99.4 36 GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC # Left flank : AAAAGCGTTGGCGTAAAGCTTATAAGCTCCTCGAAGGCTATGGGGAACGCATCCAATATTCGATTTTCCGCTGTTGGTTGACTCAGCGATCGCGAGAAAAGTTACGCTGGCAATTAGAGGAGGTGCTCACCAAGGAGGATGATCTTTTACTTATTCGCTTGTCACAACAATGTGTACAGGATTTACCCAAATATAACCGTCCGAATACTTGGCTCTTTGATGAACAGACATTTAAGGTACTCTGAAATGTTGCAAGCAATGGGGACTGTTTGGGGCGATCGCCTTTTTAAAATCGCTCAAAGAATTGGCTACTGGGCTTTTGCAATTTATCAGCAGCGGCTTAGATCCCTGTTTTTTCTGAAAACGCCTACCCTATCTAGGTTTCAGGAACATCCAATCAAGCTAAATTTTCTTCAAAGAGCCTCAGCTTGCTATGATTCACTAGGAACCTTGCAAAAGTTACCCAGAAGTCTTGCTCAGACTAAATTCTAGGACGCGCT # Right flank : CTTTAGGGCGTCTAAATCCCGGTTTATCGTTTCAATATTCATGGCTTTTCTGGCCTATATTTGGCCTAAGCCTTACGAGGGGACAGGCATCCCAGGCCACCATGAAAAAGTAAGCAAATTTTCCTTACGCTACCGATAGCGCAATGGAAATTTGACCTACACTGTAAATATGGCTCGAGGCAGATTTGAACTGCCGACCTTGGGCTTATGAGTCCCCTGCTCTAACCAACTGAGCTACCGAGCCAAAACCGTAAACGATTATAACTATAGCAACTGCTTGTGTCAAGGGCTTGGTTTAGGGTCATTGTAAATGTCCAAACTTGAGTACAAAACAAGACTAGCCGCTGCCCACATTAACCATGTCTAAATTGCCCAAAATTGACCGACAGCGGGAACACCAAGCCAACGAACGTACCTTTCTGGCCTGGTTGCGCACCTCAATCGCCCTAATTGGCTTCGGCTTTGCGATCGCCCGTTTTGGTTTTTTTGTGCGTCAAATT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTCCAAACCATTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 1 35-286 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHPU010000410.1 Synechococcus sp. PCC 7002 NODE_479_length_304_cov_0.553672, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 35 37 94.6 37 ...........T..A...................... AAGCATTTTACCTGGTCGCCGCTGGTAGCTTGTGGAA 109 37 100.0 33 ..................................... GCGTAACTGTCCTAATTGTTTCTCAAGGCTTAA 179 37 97.3 34 ...................T................. TGGTCTCCGTCTCGCAAACGTAGTCGCCGCTAAT 250 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 4 37 98.0 35 GTTTCAGTCCCGTAGTCGGGATTTAGTGGTTGGAAAG # Left flank : GCCCTTCTCTCATCGATGTTTGATTAAATCATCTG # Right flank : CCCTAGCTTTCGCCAACT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGTAGTCGGGATTTAGTGGTTGGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [35.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 69-250 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHPU010000452.1 Synechococcus sp. PCC 7002 NODE_526_length_292_cov_0.460606, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 69 36 97.2 36 ............................T....... GAACGACAAGGCTTAAAAGGGGGTAATTCGTGATTT 141 36 100.0 38 .................................... GTAGGCAGGGGAGTGAAATGGTTTCATGTTGGGCTCAT 215 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 3 36 99.1 38 GTTTCAGTCCCGTAATCGGGATTTAGTGGTTGGAAA # Left flank : AGTCCCGTAATCGGGAGTTAGTGGTTGGAAAGCCGTTTCGATTAATTTCAGAGGGTGCAATTTGAGTGG # Right flank : TCAGTAAGATGAAGGAGGTGGTGACTTGTAGTTGCGGATGGT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGTCCCGTAATCGGGATTTAGTGGTTGGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 24-280 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHPU010000503.1 Synechococcus sp. PCC 7002 NODE_581_length_287_cov_0.431250, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 24 37 100.0 38 ..................................... TGTCCATCGATAACCGCATTGGCGACATCAGCCGCCGC 99 37 100.0 35 ..................................... CAGGTCAAAGGCTTTCTGGTGGGTATCTCGCTTGA 171 37 97.3 36 ........................T............ TTTTTCTTTTGCGTTGTGATTTCTTGAACATAATCA 244 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 4 37 99.3 37 CTTTCCAACCACTAAATCCCGACTACGGGACTGAAAC # Left flank : TCACCGCCCTGTCCCCCTTGGGAC # Right flank : CCGTCCT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAACCACTAAATCCCGACTACGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.00,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [11.7-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 273-13 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHPU010000592.1 Synechococcus sp. PCC 7002 NODE_680_length_280_cov_0.562092, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 272 37 100.0 36 ..................................... AATTGGAACTTCGGATCGCATCAAAGTTGTTCCCGC 199 37 100.0 42 ..................................... TTCAATCACGGCGGCAGGAGCCGACCTTGGTGACCTCGCCGA 120 37 97.3 34 .............................T....... AAGAAAAAATGGGGGCTTTGATTTTTGTGGCAGA 49 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 4 37 99.3 38 CTTTCCAACCACTAAATCCCGATTACGGGACTGAAAC # Left flank : AAGGCAA # Right flank : CAAGACCCACGGA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAACCACTAAATCCCGATTACGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [8.3-8.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 38615-40912 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHPU010000009.1 Synechococcus sp. PCC 7002 NODE_9_length_117107_cov_187.726799, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================== ================== 38615 36 97.2 44 T................................... AAGCAGAGACAGGGATTGAGAGAACACCAGCAAACTCCTTATTG 38695 36 100.0 37 .................................... TTAGAGGGCTTCTCTTGAGCTTTGTTGGCGAGTAACA 38768 36 100.0 38 .................................... ATAAGGATCTATTAAAAGCAAATCAACATCTATTTTAA 38842 36 100.0 35 .................................... TGGTTTACTGCTGAGTTCTTGGTGACTTACACCAA 38913 36 100.0 43 .................................... ATGAGTGCTATGGGTTATCGATCCTATGATCAGCTATTGAACC 38992 36 100.0 35 .................................... TTTATTGTTAAAGCGTTGAGCTTCCTCAACAAGTT 39063 36 100.0 37 .................................... GGTGAAGGAGAAAAACTTCCCTGAGTTTAGTAAGGAG 39136 36 100.0 41 .................................... TACTGCAGAAGTCCGCTTTGGACCCGATGACTATCAAAAGA 39213 36 100.0 38 .................................... CAGAGATTGTAGATCATATAGACTTTCTATGGAACTAT 39287 36 100.0 42 .................................... ACAAGAAATGGCTGAATATCTTGATGAATTACTTTCTGTTAA 39365 36 100.0 40 .................................... TTGTAAAGATGACCCTACGGTTAAAGAATTTTCTAGAATC 39441 36 100.0 42 .................................... TTTTTTCAGTCACAATCAGAAAAATTCTATAAAGAATTGAGT 39519 36 100.0 40 .................................... TGAGAGAAGAGAAAAAGTATGTTCACGCCTTTGTACAAGG 39595 36 100.0 40 .................................... GAAACAATATCAGAGTCAACTCCAATAGGACCACCAAAGA 39671 36 100.0 39 .................................... TTACGGGCACGCCTGTGGCAATTCACCTTTGACGAAGTG 39746 36 100.0 36 .................................... AGATTAGCTAGAACCTCACGCAAGGGACTAAAGTGG 39818 36 100.0 46 .................................... CACAGTTGCGTAAGCTCTTGGTGAGACAACTAAAGGCCCATGCCAA 39900 36 100.0 40 .................................... TTTGTTCACCATTGACGCAGTATTGCGTCTGGTAAACTTA 39976 36 100.0 35 .................................... TGGAATTGTTGGAGTCCCCCCCACTTATTAGCGGC 40047 36 100.0 39 .................................... ATCGTGTTAGTCAAGTATTTATATATGATTACAGCTACT 40122 36 100.0 40 .................................... AATAGCTAATGATAGGCAGGGTTGCGTCTGCCTTACCAAC 40198 36 100.0 39 .................................... TTCCACCCTGGTTGTTAAGGTAGGGAATCTTGTTTGGAG 40273 36 100.0 39 .................................... CCGATAGAACCCGACAATCATTTCCGCGTCTTGTTCAAT 40348 36 100.0 41 .................................... TTCTACCTGAACTGGAGCACTATCTCAGTGAAGTCAAGGCA 40425 36 100.0 41 .................................... ACATGTTTGATCTAACTAATGGTTTAGTTGATGTCACTCTT 40502 36 100.0 39 .................................... TGCTAATCTAAAAGGGCTATCAATTGAGATAGCCCTTTT 40577 36 100.0 40 .................................... TCGTCAAGAAGATTGGAGACTGGGTTATTCTCCAAATCGA 40653 36 100.0 38 .................................... TTCGGCTAACATGTGAACTGGCAGGGCGTGAGCCCATA 40727 36 100.0 39 .................................... GTCTGAGTTGGATAAAGCTGATTGGGATATACAGAATCA 40802 36 100.0 39 .................................... TTAGCACTCTTCGTATTCCCTCTGAAGTTCGCAAGGTGG 40877 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================== ================== 31 36 99.9 39 GTTTCCAATCTATTTGCTTCTCAGGTGAAGAGAAAC # Left flank : CCTAGGGAAAGGCTCCGGGGAAAACTATCAAAAGCCAATATCTAATGCAAAACCCCAAAACTCTAGCTAATCAGCAATAAAGCCGAATTCTGGGGGGACTAAAATTATTTTCTTTTTGTTGATTTGTGGTGCAAAACAATCTAAGGGGCGATCGCCTTTTGAATTTTGCCCCCAAGAACCATTCCAGCAGCCAAGCTTAGGGTTGGCGATCGCCTAATTTCCCAATGCTATAGACCATGGTCATGGCACACATGAGCGCCCAAGTACCATCGAAACCGACGTTAATCCGGTGGCGCAGTTCGGCTTGGGGTTGATTGGCCTCCACTGCCTTAACCAGTTCGACGTAATCGCGGTACGTCCAGTAGCAAAAAAAGAGTGTCAGCCCGAAGGAAGAAGCGGCAAAAAAACGAAAGAGATTTTTAATCATTGATTAATTTTGAATGGCTTTGCTGAAAAAAAATGGCGCGCCTAAAGATTAGTTGGCTACGCCATATCCATTA # Right flank : CCGCTGGCCTTTCAAAGGCTTGTCCGGAGAGAACTCCAGCGAGCATTTGCGACCGATAGCAAAATTTTACCAGGCTCCAACAGAAAAGGCCAGAAAAAAATCCCTAAAACCCTTATCAGGTAAGCTTTCGAGCAATCACATGAAGTTAATACTGTTTCAGCCATTTTCTAGATCAGTCGCTAAATAATCGTTGACGAAGGTGGATCGCTCAGAGAAGGTGACCCCCAAATTTCCACCTGAGAGAGAGTATGACTCGAAATCGGATAAAACCGCAAACTGTCCCCTTGATCCTCTTTGTAATAACGCGAAAGTCGTTTTTTCAACTCTTTATACTTTTTGGGCGATAAATGACACTCAAACACAGAATATTGAACACGTACCCCATAACCTTCCATTAGATCCGCGATCTTTTTGCGACGCTTATCATCACTAATGTCATAGGCCACCAGATAAAACATCAGCGGATTTCGTAGGGAGCATAACCTAATACCGGACGGTAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCAATCTATTTGCTTCTCAGGTGAAGAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.40,-2.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 1 11846-8894 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHHPU010000015.1 Synechococcus sp. PCC 7002 NODE_15_length_26485_cov_280.269709, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 11845 37 100.0 36 ..................................... ACCCAGGCGTTGGCGCTGTTTTTCGTCTCAAAGAGG 11772 37 100.0 34 ..................................... TTTTTATCGAAGCAACCGTGATAGATCGCGTTGG 11701 37 100.0 35 ..................................... CAGGATGCCCTTGCAGCGATTGAGGCGGAACAGAA 11629 37 100.0 34 ..................................... TTGCTACCGCCTGGGCCTGAATCGCTACGATTGA 11558 37 100.0 36 ..................................... CGCCATCAAGGCAGACCATGACCGACCAAACCAATC 11485 37 100.0 36 ..................................... AATTCACCCGTAGTGGTCACATCATTGTGCTGCGTG 11412 37 100.0 35 ..................................... AAGGATAAGCAAGTTTGGCTTGCGACTTGGAAGGA 11340 37 100.0 35 ..................................... GCCTGCAATTCTCCACAAAACAGGCTACTTTCCCG 11268 37 100.0 34 ..................................... ATCTCTGTAGTAATCTCTGTATATATAGACGAGT 11197 37 100.0 38 ..................................... ACGCAACATCGAGGATCACCGCCCTGTCCCCCTTGGGA 11122 37 100.0 38 ..................................... TGGCCATCGATAACCGCATTGGCGACATCAGCCGCCGC 11047 37 100.0 35 ..................................... CAGGTCAAAGGCTTTCTGGTGGGTATCTCGCTTGA 10975 37 100.0 36 ..................................... TTTTTCTTTTGCGTTGTGATTTCTTGAACATAATCA 10902 37 100.0 33 ..................................... CCGTCCTGGCGATGGTTTCGGCGCGACGTTCCG 10832 37 100.0 35 ..................................... ATCACGGGGATTGATGATGAAACCTTGCGAATCGG 10760 37 100.0 34 ..................................... CAATTTTTCTTTATCCCACCGCTGAATCGCACTG 10689 37 100.0 34 ..................................... GAAGATTTGCCGCAGCAGTTGGCGAAAGCTAGGG 10618 37 100.0 34 ..................................... ATTAGCGGCGACTACGTTTGCGAGACGGAGACCA 10547 37 100.0 33 ..................................... TTAAGCCTTGAGAAACAATTAGGACAGTTACGC 10477 37 100.0 37 ..................................... TGCCACAAGCTACCAGCGGCGACCAGGGAAAATGCTT 10403 37 97.3 36 ......................T.............. AGATGATTTAATCAAACATCGATGAGAGAAGGGCAT 10330 37 97.3 39 ......................T.............. GCAGCCCTCGCAAGTCGGTGGACAATCAGCGACGAAGTG 10254 37 97.3 37 ......................T.............. ACTAGACCCTATTCTCCAAACCTTACGGAGCGTCCCA 10180 37 97.3 37 ......................T.............. AGGACGATAGCGATGGCCCCAATGCAGACCCCAATGA 10106 37 97.3 37 ......................T.............. TATGAGGTGGCCTGCGATTTGCTCTACTGCCTCGATG 10032 37 97.3 37 ......................T.............. CAGATCGCAGTCAGCAAAACAGCCAAACTTCTCAGGG 9958 37 97.3 40 ......................T.............. GTTAAATTCTCCAATCCGAGAACGCTGGCAACGCCATCAT 9881 37 97.3 37 ......................T.............. AAGTCCCGATAACAGTCAACTCTATAAGCAAATCTAG 9807 37 97.3 34 ......................T.............. GCAAGTGATATGCACCACCTCCTTCATCTTACTG 9736 37 97.3 37 ......................T.............. ATGAGCCCAACATGAAACCATTTCACTCCCCTGCCTA 9662 37 97.3 35 ......................T.............. AAATCACGAATTACCCCCTTGTAAGCCTTGTCGTT 9590 37 97.3 36 ......................T.............. CACTCAAATTGCACCCTCTGAAATTAATCGAAACGG 9517 37 97.3 36 ......................T.............. TTTCTCCCCTTGGCGCTCTAATTTGGCCCATGGCGA 9444 37 97.3 38 ......................T.............. AGGGCATCGCCTTTTCTATTAGGACTATGAATAAAAAA 9369 37 97.3 35 ......................T.............. GCTGCAATGATGGCGGAGATTAACAAAAAGGCAAA 9297 37 97.3 36 ......................T.............. AATTGGTACTTCGGATCGCATCAAAGTTGTTCCCGC 9224 37 97.3 42 ......................T.............. TTCAATCACGGCGGCAGGAGCCGACCTTGGTGACCTCGCCGA 9145 37 97.3 34 ......................T.............. AAGAAAAAATGGGGGCTTTGATTTTTGTGGCAGA 9074 37 97.3 34 ......................T.............. AAGACCCACGGACGGGGATATCTTGGGTGGGCTG 9003 37 97.3 36 ......................T.............. TTGGCTTCCGCGTTGCTCACGTTTGCTTCAGTGGCG 8930 37 97.3 0 ....................A................ | ========== ====== ====== ====== ===================================== ========================================== ================== 41 37 98.6 36 CTTTCCAACCACTAAATCCCGACTACGGGACTGAAAC # Left flank : ACTCTCTTTTACCTGATCATTTACGATTTACCTTCTACAAAGGCAGGGGATAAGCGCCGAAAACGCTTGTTTGATTTATTATCGGGTTATGGCACTTGGAAACAATTTAGTGTTTTTGAATGTTTTCTGACGACAAAGCAATTTGCAAAATTACAAACTTCGATAGAAAAATTGATCAAACCAGATGAAGATGCTGTCTGTATCTATATCCTTGATGCCACTGCTGTTAAAAAGGCGATCGCCTACGGTACATCTACACCAGAAAAACCAGGTAGCATCATTCTTTAGATTTGACCTAAAATCAAGTTGGCAAACCCATAGCGTGACCAAAAACCCTAGGGACTTCGCCAAAATCTCTAGAACCTTGAAAATTCAATACTTTTCGATACTTGAAGGTCAACAACTTGCGTGGCGATCGTTGGTAAAATCAGATTCATGGGGATACATCTGCCAAATAAGCTTCGCAAAGCTAGGTATCGTCAGGTTTCTGGATCGCGGGC # Right flank : ATTTGTCCACGTGGCAATGTATGGCGATAGTTACCACTTTATTAACCTGGACAACAGCCCTGGAAGTTGTTATTAAATACTCTCATTTTGAGAGTATTCGGTTACTATTGGGGAAAAGGACTATATGCACTTAATCAGCATCAGCAAACTAAGGCAAGATGCAGCCAAATACTCTGATAGTAAATCAGCCCTAGATGCTTGGTATGCAGTGATCAAGCAGGCCCAATGGCAAAATCTAGAAGAGGTTCGGAAAACCTATCGAGACGCGGAGGCCGTCGGAAATTTTACTGTATTTAACATCAAGGGGAATAAATATCGCTTAATCGTTGGCATCGACTACCCATCTCAAACCGTTTACTACAAATATTTTTTGACCCACGCTGAGTACGACAAGGACACTTGGAAAAATGACCCCTACTTTAGATAAACAAAACTATGCCCAACTTCTAATGGATGCTATGCCCAAGGTCATCGAGACTGAAGCTGAGTATGAGCAGACA # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.72, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCAACCACTAAATCCCGACTACGGGACTGAAAC # Alternate repeat : CTTTCCAACCACTAAATCCCGATTACGGGACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //