Array 1 1333814-1336189 **** Predicted by CRISPRDetect 2.4 *** >NC_013235.1 Nakamurella multipartita DSM 44233, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 1333814 37 100.0 35 ..................................... ACCAAAGCACGTCGCCAACTTCTGCTAGTATACTC 1333886 37 100.0 34 ..................................... GTCGTCACCACGTTGCCACAGGGCAATCGAACCA 1333957 37 100.0 34 ..................................... CTTCATCGGTTCGCCTTTCTGTCTGTCAGGTCGA 1334028 37 100.0 43 ..................................... GTGAGCTTGGACATCCCTCGGATCGTCCCGCGTAGCTCCCGGA 1334108 37 100.0 38 ..................................... CGACTCTCGCGGTTGCCCTCGGCGTCGTATTTATCGCG 1334183 37 100.0 35 ..................................... GGCTGCGCGAAAAGCTCGTCGCGCCAAGCAGTTTC 1334255 37 100.0 34 ..................................... GAACTGCTCGGCGGTGGCCGAGCGGGTCACCATG 1334326 37 100.0 31 ..................................... GCGTGCATGAGGGGTCAACCTTTACTTGAGG 1334394 37 100.0 35 ..................................... GGACCCAGTAGGGACACTTGAGGGTGATGACTCGG 1334466 37 100.0 35 ..................................... AGCTTCGCGAGCCGTGGATCTTGGCGTTGGCCGTG 1334538 37 97.3 34 ...................................T. TACACGTCTCGGTGTGCTCGTTGTAGAACGAACT 1334609 37 100.0 39 ..................................... AACGCGGAGAATCCGTTTATGTACGGATCGCTCCGACAG 1334685 37 97.3 34 ..................................G.. GGCTCGTTGGGGACGCACGATCCATCGTCGAGCT 1334756 37 100.0 39 ..................................... TTGGTCTCGTCGATGCCTTGCTGCAAATGTTGTGCGAGA 1334832 37 100.0 37 ..................................... TAGATCGCCGCCTGCGGAGCGAAGGACAGACTCAGGC 1334906 37 100.0 37 ..................................... TAGATCGCCGCCTGCGGAGCGAAGGACAGACTCAGGC 1334980 37 100.0 31 ..................................... CGCTTGCAGGCAGCTGCTTGACGATGTTGTC 1335048 37 100.0 33 ..................................... ATGCATAGTCCTGCCTTTGCGATGAAGCCGAAA 1335118 37 100.0 36 ..................................... GTTGAGCACGGCCGCGAGGCTGGTGCGCTGCGATCC 1335191 37 100.0 36 ..................................... TGCAGCGGGCACACAATTCGATTGGAATTCCCGCGA 1335264 37 100.0 38 ..................................... TCACGTAAGCTCACTCGTAAGTGAACTAGTAGGTCACC 1335339 37 100.0 37 ..................................... CGATTGGGCGGGAAAGAGCCGCCACTTGAGCCAGCGC 1335413 37 97.3 35 ...........................A......... GTGTGTCACACGATCACATCCTTTTGTTGTCAAAG 1335485 37 97.3 35 .......................T............. TGGATGCCCTGGTCGGTCCGGAGAAAGCTCTTCTC 1335557 37 94.6 32 .A.........T......................... TCCTCACATCACTTGCACTTCCATGCTCACCA 1335626 37 100.0 39 ..................................... GTGCCGACCGAGTTGCCTGATGCCTCGTTGTTAGGTAGA 1335702 37 94.6 36 ......................C...........G.. ATGATGGCACTACTGTCGCCGGTAAACATGCTGATG 1335775 37 94.6 37 ...........T........................T ACTAAGGCGTCGACGGGCTGGGCGGTGAGCGCGTGCA 1335849 37 91.9 37 .........G.A.......................G. GGCGCCTGGCGGGCCATAATCCGGAACGCGTCTTGCG 1335923 37 97.3 40 .........................C........... TTGTTCAGGACGACCTTGATGGCCTCCACGACCGGGTGAC 1336000 37 100.0 37 ..................................... CCTGTGCAGCGTGGTGGCCGGCCCGACGGTTTCACAG 1336074 37 97.3 40 ...................................G. CTCGCCACACATAAATCGTGCTGCCCTTTTGTGCAGTGGA 1336151 37 75.7 0 ...C.G.AT......TT.T...............G.T | G,T [1336166,1336170] ========== ====== ====== ====== ===================================== =========================================== ================== 33 37 98.0 36 GTTGCATTCCACGTCACGCCGTTGGGCGTATAGAAAC # Left flank : CCGGGGCGAGGCCCGCTCCTACTCCAAGGACCGCTACTCGCAGGACGACGTGCTCGCCGACGACAAGCTGGTGCCCGAAGGCATCGAGGGCCGGGTGCCCTACCGGGGCCGGCTGCAGGACGTGGCGCACCAGCTGGTCGGTGGGCTGCGGGCGGCCATGGGCTACACCGGATCGGCCACCATCGAGCAGCTCAAGGACGCCCGCGTCGTCCGCATCACCTCGGCCGGCCTGCGCGAATCGCACCCGCACGACATCGCCATCACCTCCGAGGCGCCGAACTACATCGACCGCTGACGGCTGGGCCCCCTCCGTCGGGCGCCGCACTTGGGGGAGTGGGGTGGCTGGCGATCATGGCCCGCCGCCCTCTGCTGTGCAAGGCTGTGACCTGCGGTGATGCTGAATTTTCGGCTCTTAGGGGACTCGGTGATGATCTTGATAGGGCCTGGTGTGCACGGCGGTCGCGTTGGTGCAGGTCAGCGGCTGTGCCAAATGGGGTAGG # Right flank : TCCGAACAACTTGCGGAGGATCAACAGGACGCCGCTGGCAATCAGCGTCACTGTCAACGGTCAGTTTGCGGTCCCCGCTGGTGGCCATCTGGTGGTCCCCACCCTGCCGCTGATTTCAGTGGTGTTGGGGGCCTCCTTGCGGTGCTGTCGGGCGTCGCGCATGCGGTAGGACTCGCCGTTGGTGACGACGACGGTGGCGTGGTGCAGCAGGCGGTCCAGGATGCTGGCGGCGGTGGTGTGCTCGGGCAGGAACCTTCCCCATTGGTCGAATGCCCAGTGGGAGGCGATCGCCAGTGAGCGTCGTTCGTAGGCGGCCGCGACGAGCCGGAACAGTAGTTGGGTGCCGGTGTCGTCCAGCGGTGCGAAGCCAACTTCATCGCAGATGATCAGGTCGTTGCGGAGCATGGTGTCGATGACCCGGCCGACGGAGTTGTCGGCCATTGCTCGGTAGAGATTCTCGACGAGATCGGCTGCGGTGCAGTATTTAACCCGGTAACCGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCATTCCACGTCACGCCGTTGGGCGTATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.40,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 2 1364626-1365686 **** Predicted by CRISPRDetect 2.4 *** >NC_013235.1 Nakamurella multipartita DSM 44233, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 1364626 37 100.0 34 ..................................... TACTTTCACCGGCGTAAACCGACTAGGCATAGAA 1364697 37 100.0 36 ..................................... GTCTATGAAACGACGCAGTCAGTTCTTTTGCCTCAG 1364770 37 100.0 35 ..................................... ATCTGCGACGGGTCCGCACCGACAACCATACCGAG 1364842 37 100.0 38 ..................................... GACCTCCTCATCGCTCGCTGAACTGTTGATTACCAGGA 1364917 37 100.0 35 ..................................... CTGCGGGCTAGTTCACGGTAGTCGTCACGATCCAT 1364989 37 100.0 37 ..................................... GTTCCCGTCTTCGTCAACCAGACTGAAGATGCCATCG 1365063 37 100.0 36 ..................................... TAGACACGATTATTTCTCCACAGCATCAGCATGCAT 1365136 37 100.0 32 ..................................... GAAGGAGGTTGGAACCTCACTTCTTGGGAGCG 1365205 37 100.0 31 ..................................... CCCTCAGCAGCCGAGCGGTGTCATGCCGGCC 1365273 37 100.0 36 ..................................... TTTCGGTGGCAGGCTGGAAATAAGTCCAACAGTGCG 1365346 37 100.0 37 ..................................... TTTCGTCGCTGACCGAGATATAGAACGTGTACGGCTC 1365420 37 97.3 40 ..............A...................... CCAGACGGCAAAGAACAAGAACGCAAAGACGAAACCACCG 1365497 37 100.0 35 ..................................... TTTGCTACACCCTGCGCGCCACCAGATCCCCAGTT 1365569 37 100.0 44 ..................................... CTAGCAATCTTTGCATATATCTCGTTGCGCTGCGCACCAGTGTG 1365650 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================ ================== 15 37 99.8 36 GTCAGAAACCACGTCACGCCGTCAGGCGTATAGAAAC # Left flank : GGCCTGTCGTGGCGCTGACGGTGATCGTTGCCTACGACATCAGCGAGGACAACCGGCGGGCCCGCCTGGCCGCCGTGCTGCAGGCGTACGGCGATCGAATACAGAAGAGCGTCTTCGTGCTGTCGGCAGACCAGCCGTTGATCGATGACCTGCACCGGCGCGCCCGGGACATCATCGACCTGGACCGGGACTCGGTCTACTTCTTCCGGCAGTGCGCGCCGTGCTGGGAGTCCGTGGGAGTGGTGGGCCAGGCCACCGTGGCGGAACCGCAGCGATACTGGGCGGTGTTCTGACTGTTGCTGGGCTCATTGACGGGCTGCTCTTGTCTGGGAAAGGGGGTGGCTGGCGATCATGGTGCGCAGCCTTCTGCTGTGTAATCCTCTGACCTGCGACAATGCTGGCTTAGAGCTCTGCCGGCGGACAGTTGTTGATCTTCAGTCGGCCTGGTGTGCAGCGGGCCCGCGTTGGCGCAGGTCAGCGGCAGTGCCTGGTGGGGTAGG # Right flank : CGCTCTGGGCCACCATGAGGGTCGTGCGAAGGTGAGGGGGTCAGAAACCGGCTCTTCGCTTTGAAGCTGGGTGGGGGTTTGATCCCGGGGCGACACGCCGGGGCTGAGATGCGCTGATGTGGGGCCTGGGGTCCTCACGATCCGTGTTCACCGCCAAGTGAATGCGACCCGTGAGGAAGGCCCCAGGTGAGCGATGACGTTACCGGTGTGTTCGTGCTGCCCGGATTCCGGGTGGTGTCCAGCGACGTGCTCGACGACGAATGGCACCTGCTTGTGGAAACGCGGCGGGAGCCGACGGGCTGCCCGACCTGCGGCGCGGTCGCCCGAGTCAAGGACCGGCGCACGGTGACCGTGCGGGACCTGCCGGCCGGCGGTGTGCCGGTCGTTCTCCGTTGGTGCAAGCGGATTTTCGAGTGTCGATACGGGTTGTGCGAGAAGAAGACCTGGACCGAGCAACACGACGCGATCGCCCCGCGTGTGGTGCTCACCGACCGTGCGCA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAACCACGTCACGCCGTCAGGCGTATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 3 1367179-1367813 **** Predicted by CRISPRDetect 2.4 *** >NC_013235.1 Nakamurella multipartita DSM 44233, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 1367179 37 94.6 41 CC................................... ACCACCAGCAGCACGGCGACCACTATGCCAACTGTCGTCCA 1367257 37 100.0 37 ..................................... TCAGCTCGCGGCCATCACTCGGGTCAGCGTGCCCAGG 1367331 37 97.3 40 ................................T.... CCCACTGTTCACTGAAGTAAGTGGACGCAGCCGAAACCTG 1367408 37 100.0 35 ..................................... GCTTCACCGAGAGTGTTCATTTGGTCTTCACCGTC 1367480 37 100.0 42 ..................................... CCGCTCGAGCGTGAAGGTGTCCTGCCAGCTCAAGGGACGATT 1367559 37 94.6 35 ...............................GC.... CTCGTCCGGACGGACGAAATCCTTCTCGACGCCAT 1367631 37 94.6 33 ...................T..........G...... TGAGTTTCCGGCCTGACCGTGGATTCTTGCGGC 1367701 37 100.0 39 ..................................... TCGGTCTCGTAGCAGGGCCGGTGTCGAACTCGTCACTGA 1367777 37 83.8 0 .......G....A................T.G...GA | ========== ====== ====== ====== ===================================== ========================================== ================== 9 37 96.1 38 GTCAGAAACCACGTCACGCCGTCAGGCGTATAGAAAC # Left flank : CACCGCGGCCGGGCCGGCGACCCGCTGTACCGGGTACGACGGATCCTGCGGCGCCGCTACGACCGGCTCACCGACCGGCAACTGGTCCGACTGCGGGCCGCACTGACCGACGCGGACACGCACGAGGAGATCACCGCCGCCTGGCTCGTCGCGCAGAACGTCATGCAGGCCTACGCCAACCCCGACCGGGCCGCCGGACGCGCCGCGGCCGAGCAGGTCATCACCCTGGCCAAGACCTGCCCGGTTCCCGAGATCGCCCGCTTCGGGCGCACTCTGGTCGCGTGGCGGACCGAGTACCTGGCCCGGTTCGACAACCCCGCCCTATCCAACGGACCCACCGAGAACCTCAACCTGAAGATCAAGAACACCAAACGGATCGCCCGCGGCTACCGATCGTTCGCCAACTACCGTCTGCGACTACTTCTCAACCACGGCCTCATCAGGCAAGATCAACAACCGGCACGGATCCGACCACACCGACCCAGGTTGATTGCGTAGAG # Right flank : AAGGCGTTTCGATTGCAAATGTGCGCGTGAGCGCGTGTCGCCAGAAGGTCGGGCCGCTCGGGGTGCCGAGACTGCCGGAGCGTGGGATCCTTGTGGAGTCTGGTCGGGGCCTTGCGGGGCTGCGCCAGCCTGCTGGGGAGCTGATGAGTAGGGCGGTGGGGGCGTGAGCGTCGTGCTTGTAGCTGGCGACCACTTGCCGACGGCGGGAGGCCCGTGCGGCCAGCGGCCCAGCCCGGCGATTGCCGGGTGTCGACGCAGCCGCATGAGGGAGCCACATTGGCCCGAATGCCGTGGCATGACGAGGCAGTGCAGTCAGGCTTCGACGGAACAAGAGCAGCAAGGTCGAGCCGCGACCATCCGGCGGGCGAGTTCAAAGCCACGGGCCCGCTGGGCGTGGAAACTGAGGTTGGCGACAGAACCTCGTGCTCGACGAAAGAATGTGGCTGCGATTGGCCGGAGGTTGCTTGATGCCCCAGCTCGATAGCACGAGCTTCGTCAAC # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.81, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAACCACGTCACGCCGTCAGGCGTATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-7.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0 Confidence: HIGH] # Array family : NA // Array 4 3338505-3336214 **** Predicted by CRISPRDetect 2.4 *** >NC_013235.1 Nakamurella multipartita DSM 44233, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================== ================== 3338504 28 100.0 33 ............................ CATCGCCGGCAAGCACGCCGCGACGAACAGCGC 3338443 28 100.0 33 ............................ CGATCATGTGCACCTGGTCGTGCAACTCGTCCG 3338382 28 100.0 33 ............................ CGGCGAGCAGAGCGGTGACCTGATCGGCCAAGA 3338321 28 100.0 33 ............................ CGTGATCGTCAAGCCCGGCGTCTACCTGACCGC 3338260 28 100.0 33 ............................ CGAGTCCGGGCTCATGGGCCAGGACAGCGAGAA 3338199 28 100.0 34 ............................ GCGTCCGCGGATCGACCCGTTACGCACCGATCAG 3338137 28 96.4 33 ........................G... CCGCATCGGCAACTGCCGTGACTTGGCGACCTG 3338076 28 100.0 33 ............................ CCGCCCGCGCCCAACTCGGCCAGAGCCTCGACC 3338015 28 100.0 33 ............................ CCGCCCGCGCCCAACTCGGCCAGAGCCTCGACC 3337954 28 100.0 33 ............................ CGAGCCGAAGCCACGCGACTGACCGACGAACAG 3337893 28 100.0 34 ............................ GTGTCGGATCAGGTCGGCATTCGAGCCCACCCAT 3337831 28 96.4 33 ...........A................ TACTCAGAACTGGCTCGTCGACTCCTCGTTCGT 3337770 28 100.0 33 ............................ CGGCCGCAGGCCGGTCAACTGGGTACATGACTC 3337709 28 100.0 33 ............................ CGCGCCACACGCACGCCCCCGCTCCTGGAGGGT 3337648 28 100.0 33 ............................ CCTGAACTCGTGGGCCGCACACGCCCGCGGGTT 3337587 28 92.9 33 ..........T...T............. CGGTTCCTGGGTGCGCTCACCGGCGGTGCCGTC 3337526 28 96.4 33 ..............T............. CACGTCCGTACCCGAGCCGGCGGTACGGCTGGC 3337465 27 89.3 33 .C......-............G...... CTACACGGTATTGGCCTACCAAATCGGGATTCT 3337405 28 100.0 33 ............................ CTGCCAGGAGTTCAGCTGGTTCGCCGCGTCGGC 3337344 28 100.0 33 ............................ CTCGTCTTGGCTGGCTGGCTCTTCCTTGGCGAT 3337283 28 100.0 33 ............................ CCGCCTCCCTGGAGTCCACGAAGACCCAGATAG 3337222 28 100.0 33 ............................ CCCGAACAGCACGGCGGCGGTGCGGGCGCACAG 3337161 28 96.4 33 ................T........... CTCCTGGATGGTGACCGGACTGGTGCCGAGGTT 3337100 28 100.0 33 ............................ CGAACCGACAACCCGCGCGTGCAATCTGCTGGC 3337039 28 100.0 46 ............................ CGAGCTGCTGCTGCACGGCGCATCGGACGCCGAGGCGGCCCGGGTG 3336965 28 100.0 33 ............................ GTTTCCCTAAACAGGTTCTTCTCGATCAGGTTG 3336904 28 100.0 33 ............................ CCATCGCCGATCCGTTCCGATTCGAACGCCGCC 3336843 28 100.0 33 ............................ CGAGTTCACGCCGAACACGGTGACCCACACCGG 3336782 28 82.1 33 .............GGA.C.........G TTCATCCCGGTCACCCTCGACGGCTCCGGCTGG 3336721 26 89.3 33 ...........--.A............. CTCCCGCTCCAGGTCGATGTTCAGGAGGGCTTG 3336662 28 100.0 33 ............................ CCCCGCGGATAGTAGAACCTGCCACGCAGCAAG 3336601 28 100.0 33 ............................ CTGCCGCGACTGGTAGGTGAACAACCTCGTGTA 3336540 28 100.0 33 ............................ CGGGTTCTCCGAGGCGTGCGTCCGCCTGTCCTC 3336479 28 100.0 33 ............................ CCTTCGTCGTCGTGCCCGCTGAGCTGCCCGAGG 3336418 28 100.0 33 ............................ CGGAACCCACTTCACCCCGTCGCACCAGTACTC 3336357 28 96.4 33 .......T.................... CTGGCTTGAGGCAAAGGCCGCCGGGACTCGGCG 3336296 28 89.3 27 .............T...A........T. CGTCAGAGCGACCCCGTAGGTAGTGCC 3336241 28 82.1 0 .....T.AG..AA............... | ========== ====== ====== ====== ============================ ============================================== ================== 38 28 97.6 33 GTGCTCCCCGCGCCCGCGGGGATGAGCC # Left flank : TCGAACCCCACCGGCACGTCCACCGGCGGAAACCACAGATCGCACTGCGCCAACTGCCCCGGCCCATACTCCGTCCGCGACGCCGGATCCGGCGGCACGAACAACGGCCGCAACACCGCGACCCGCTCGAAGAACACCGTGCGGCCCCGCGACCACCCAACCCGCTCCATGATCACCGACGTCGGCATCGACGGAAACTCCGCCAACAACGCCCGGATGGCCGGCTCGAACGCATCAACGGCCGACCCGACCGTCGCCCGCTCATACCTCGGCGGACCCTGCGCGGCCAACGCCCGCTTCACAGTGTTCTTCGAACACCCCAGACGCCGAGCGATCGCCCGGATCGGCATCCCCTCCGCCCGATGCAACCGACGGATCTCCGCCCAGTCATCCACAATCAGCACCCCACGATCGTTGCGAGGTGGGTCAGTTTTCAACCGGACCAGCTGGGTCAGGATTCACCCGGAACCGACAGCCTCCACGAAGACGGACGGCAGTTA # Right flank : GAAGGCGACGACGACCGGCGGGACGAGGTTGTACAGGCTGTCGACCCCAATGATCGCGAGAGGTCAGGATCCGGTTGTCGGTGATGGCCTGGAAAATCACCGTGAACGAGCCGACCGCGGCCCCCACGGCCAGCACCGTCCGTTCCCTTACCCGCGGGGCGTAGTCCAGCGCGCCGGGCACCGCGGCGACCGGGGGCACCCTCTTCCGCGCCCCGCCGAGCCGCGGGACCGGCCGCACCCGCACGCGCCGGCGCATTGCGACGGCTGGCGACTCCGGCACACCACTGACCCTGCTCGACACCCCGCCGACACGCCGAAACCGCAGCAGACAACGCCATGATCAACTCCGGGAGCGGGGGAGCGCCACCCGGAATCACGCGGTCCGGGCGAGCAAACCGCGCAGCTGATCGATCAACGGATCCGGGTGCCGCCAGATGTCGGCGGCGGTCGCGTACACGATGGTCCAGCCGGCGCGGCTCAACTGATTGTGCCGCTGCCGG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [19-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 3345759-3344693 **** Predicted by CRISPRDetect 2.4 *** >NC_013235.1 Nakamurella multipartita DSM 44233, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3345758 28 100.0 33 ............................ CGCCAGTGGGTAGTCGTTGCTATCGGTGCAGTA 3345697 28 100.0 34 ............................ CCGGTCGAAGGCGAGAGAGGCGCGTCAGGCGGCA 3345635 28 100.0 33 ............................ CCGCATCTCGGTGTCGTCGTGGTCGCTGCGACG 3345574 28 96.4 33 .A.......................... CCGCGAAAGGTGAACCGTCGGACGGTTGGGCGA 3345513 28 100.0 33 ............................ CGTAGCCAGCGAGGGCATGCCGTTCCCGCTCCG 3345452 28 100.0 33 ............................ CCGTGCCCGTGCTCGCTGCCGTGCCGCAACGTC 3345391 28 100.0 33 ............................ CCGCGCGGACCGGCTCCGATCTGCGGAAACGGG 3345330 28 100.0 33 ............................ CCCTGCCGAGTACGCCACGGGCACAATCTCGGG 3345269 28 100.0 33 ............................ CTACGGCTTGACCGCCGCCAGCAAGGGGTGGGG 3345208 28 100.0 33 ............................ CGGCGCATTGAGGCTAGCGATGGGGGTGTGGTC 3345147 28 100.0 33 ............................ CGTGCAGGCCGGGCAGATCCGCTCGCTGGGTGA 3345086 28 100.0 33 ............................ CGGCTCCGACCCGCCGATCCGGTCGAAAGCCGT 3345025 28 100.0 33 ............................ CCGGCACCGGGTCGAGATGTGGTGGACGACAGC 3344964 28 100.0 33 ............................ CTCGGCGGTAATGGTGCCGCCGAACTCGCGCAT 3344903 28 100.0 33 ............................ TCGTGGCCGGGATGGCCGTGCCGACGTAGCTAC 3344842 28 100.0 33 ............................ CGCGGCACCCGCGATTGGGGACCTCAACGCGGC 3344781 28 100.0 33 ............................ CGATCGGACAGCGATATCCGTAGTCGACGCCCT 3344720 28 92.9 0 .......................AT... | ========== ====== ====== ====== ============================ ================================== ================== 18 28 99.4 33 GTGCTCCCCGCGCCCGCGGGGATGAGCC # Left flank : CGAGTACGACACATCGGCGGCGCCGTGTTCGTCGAGGAGCCGGTCCAGCACCCGCTTCGCGGTGTGGCGTTGCTTCCTCGGCGCGTCCAGGTCCGCCCGCAGCCAGTCGTCGATCGTGACCTTGAACGGTTCGAGCTTCCGGGAGACCCGCACCGGTGTCTTCCGCGGCGGCGGTAACGCACTGGCCATCGCCTGCCGAACGGTTCTGCGGTGCACGTGATGCCGATCAGCGAGCTCGCGGATCGACAATCCCTCGACCCGGGCGTCGCGCCGGATGACAGCGAACAACTCCACCCTCGACCCCATCCCTGCCCCTTCACCCGAGAACACCGAACAACTCGGATTCACCGTCGGGGTGGGGCCAGATCAAACCGTCACAACGCGCCCGGCGTGTCGAAGGTGGGGCCACTTCAAACCGTCACGCCTCGACCTGCCGACACCGGTGGTGGGGCCAAGTCGAACCGCCAACCCGGGGCCAGATCAGACTGTCAGGGCCAGAG # Right flank : CGTGATCGCCTCTGTCAACTCCGGTTGAACTTGGACCCTCCTTGTCCGGTTGAAAACTGACCCACCTGGTGGTCATTGGTCGGTGTTGGCCGCTGGTGGGCGGCCCAGGTCGCGGTCTTTGAGTCGGTAGCTGTCGCCTTTGAGGGCGATGACGTCAGCGTGGTGGACCAGGCGGTCGATCATCGCGGCAGCGACGACGTCGTCGCCGAAGACTTCGCCCCACCGGCCGAAGGGCTTGTTGCTGGTGACGATGAGCGAGGCCCGTTCGTAGCGGTTGGACACGAGTTGGAAGAACAGGTTCGCGGCCTCGGCTTCGAACGGGATGTAGCCGACCTCGTCGATCACGAGCAACGGGTAGCGGCCCAGACGAACGAGTTCTGGTTGCAGCCGGCCGGCGTGGTGGGCCTCGGCCAGGCGAGCGACCCACTCGGCGGCGGTCGCGAACAGGACGCGATGGCCGGCTTGGCAGGCGCGGATCGAGATGCCCGTCGCGAGGTGGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [46.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 3355074-3348444 **** Predicted by CRISPRDetect 2.4 *** >NC_013235.1 Nakamurella multipartita DSM 44233, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ========================================== ================== 3355073 28 100.0 33 ............................ CAAGGAAATCGACTGGGACACCGACACGATCAA 3355012 28 100.0 33 ............................ CGGCGCCGAGGGTCTGGTCGTGTTCAACGTCGA 3354951 28 100.0 33 ............................ CGTGACGTCAGCAGCACCGGCGCTGATGGTGGT 3354890 28 100.0 33 ............................ GTCCGCTGGGCTGCTCAGCAATCCGTCGTGGCA 3354829 28 100.0 33 ............................ CATCTTCGGCACCCTGTGGGATGTCCTGGTTGA 3354768 28 100.0 33 ............................ TGGGCCCGATCACAGGGAGGAAGGCAGCCGACA 3354707 28 100.0 33 ............................ CTGCGCGAGGGCGACGAGATCGAGGTTGTCTGG 3354646 28 100.0 33 ............................ CGCCTTGGTAGCGAGGCGACTGCCAAAAGGTGG 3354585 28 100.0 33 ............................ CGTCGCCGCAACACTTCCCGCGGTTGTCTGGAT 3354524 28 100.0 33 ............................ CTGCGCGAGGGCGACGAGATCGAGGTTGTCTGG 3354463 28 100.0 33 ............................ TGACCAGCACGGCACCAAAAGAAGCACGCCAGA 3354402 28 100.0 33 ............................ CGACCGCCTGCTCGTCCGAGCCGTAGAACCATC 3354341 28 100.0 33 ............................ CACCGGTTCGTCGGATGCCATGCCACGGACATG 3354280 28 100.0 33 ............................ CCTCACCCACTCCAGGCCGGCCGGTGGGAACGT 3354219 28 100.0 33 ............................ CGCGGTCAAGTGGTACGGAACCGGATACGGGCC 3354158 28 100.0 33 ............................ CGAGTGCATCGCTACTGCGAATGCGATGAGTTC 3354097 28 100.0 33 ............................ CCAGGCAGCACCGGTCAGGGTCGCCGCGGAACA 3354036 28 100.0 33 ............................ CGAGGGCCTGGAACAGGGGCGCAACAGCGGTCA 3353975 28 100.0 33 ............................ CGTGACGCTGGTCCCGGTGCCGCCGGCCCAGGT 3353914 28 100.0 33 ............................ CGAGGCAGCGATGAAGCTGGGGACCGTCTCCCG 3353853 28 100.0 33 ............................ CGACGACGGCACCTACCGGTTCGAGTTCCAGCA 3353792 28 100.0 35 ............................ CGCTGACCGTGTAGGTGTTGTTGGTGACGAGGTAG 3353729 28 100.0 33 ............................ GGAGGTCGACGTCCCCGAGCGCCTGGTGCCCTA 3353668 28 100.0 33 ............................ CGATGCCCTGCTGGCGGTCAAGGACAAGCTGCT 3353607 28 100.0 33 ............................ CTCGCAGCTCACCCCGACCGAATACGAGACGTA 3353546 28 100.0 33 ............................ CATACGTGCGATACCTAGCCGGCGCGCGTGAAC 3353485 28 100.0 33 ............................ CCGGGAACCGGTCAGGGTGACCTGGTTGCCGGC 3353424 28 100.0 33 ............................ CGATCCGGAGGCCGTGGGGGTCGGCGGCGAGTA 3353363 28 100.0 33 ............................ CTTGGCCGAGTTCTCCGAGTTCCACATGTAGAC 3353302 28 100.0 32 ............................ CGGCGCCCAGGTCGACCGTGACGGCCAGGCGC 3353242 28 100.0 33 ............................ CGGCACGAAGCTCGTCGACGGCCGGCCGCTGCT 3353181 28 100.0 33 ............................ CGTCGAGGTCCGCAAGGACCGCCGCGGCGAAGG 3353120 28 100.0 42 ............................ GCCCGCCGCCGCGCCGAGTGAACCGGCGCAGCCTGCGCCACC 3353050 28 100.0 33 ............................ ACGGTCACGTCATCCGCCCCTGCTGCCGTTCCT 3352989 28 100.0 33 ............................ CGCCCGGGACAGGGCGGTCGGCAGATCCTGCTT 3352928 28 100.0 33 ............................ GGTCCTCGCGGCGTCGAAGCTGCTGCCGCCGGA 3352867 28 100.0 33 ............................ CTCCGGCGACCTCCTGCCGGACCTGGCCGCCGA 3352806 28 100.0 33 ............................ CCGAGCCTTGCAGTCGATCCCGACCCAGCCCAC 3352745 28 100.0 33 ............................ CCCGGGTCCGCGGCCGCGACGGGCTCACCCCTG 3352684 28 100.0 33 ............................ CTCGGACAGGCAGACCAGTCTGGTGACGCGGCT 3352623 28 100.0 33 ............................ CTTTAGCGATGCCGTGGCCGACGTCCCACCCTC 3352562 28 100.0 33 ............................ CCTCGCCCGCGACGTCGGCCACCTGCTGCTGCC 3352501 28 100.0 33 ............................ CCGGGACATCAGCGTCAGGCCGGTCACCACCGG 3352440 28 100.0 33 ............................ TCTGGCCGGCCATGAATTGGCTGGTGAGAGATG 3352379 28 100.0 33 ............................ CCCGGACGGCTCGCTCAGTGCCGGGTTCGCCCT 3352318 28 100.0 33 ............................ CGCGATGGACCGGGCCTCCGGCCGGCAGGTCAG 3352257 28 100.0 33 ............................ CGGATCACCGGGTCGGCATCGGGCAGCGAGCCG 3352196 28 100.0 33 ............................ CCACCTACGACGACGAAACCAGGGCGCACATGG 3352135 28 100.0 33 ............................ CGACGCCTCGTTCGACATCCTGGCGTACGTCGC 3352074 28 100.0 33 ............................ CCGGGACATCAGCGTCAGGCCGGTCACCGCCGG 3352013 28 100.0 33 ............................ CCCTTCGCGCTGGTCGCGATGTTGTCCAATGCG 3351952 28 100.0 33 ............................ CCCGACCTCGCCGACGATCACCCTCACCGCGAC 3351891 28 100.0 33 ............................ CGGCCGGCCGGCACGCGGCTTGTACACCAGCGG 3351830 28 100.0 33 ............................ CTGCCTGCCGGACCGGCCGACGACGAACCGCTT 3351769 28 100.0 33 ............................ CCGCGAAAGGTGAACCGTCGGACGGTTGGGCGA 3351708 28 100.0 33 ............................ CTCTCCGCCGCCCCGGTCAGCCTCTCCGGGACT 3351647 28 100.0 33 ............................ GCCCGCGAGTCGGCCGGACAGGAGTGGCTGACC 3351586 28 100.0 33 ............................ CCTGTCGCACTTCGTCTCCTGCGATGAGCAGGC 3351525 28 100.0 32 ............................ AGGACGCCGAAGATGATGCCGCACAGGATGAT 3351465 28 100.0 33 ............................ CCCCACTGGCGCGGACATTCTCACGGTCACCTT 3351404 28 100.0 33 ............................ CCTCGCGCAGGCGAGCCAGGTTCCGGCCAGTAG 3351343 28 100.0 33 ............................ CCGGAACTCGTGGATGGTCGGCCGGGTGCGGGA 3351282 28 100.0 33 ............................ CGAGGGCGACCGGATCGGACTCGTTGACGGCGA 3351221 28 100.0 33 ............................ CCTGTTCTCCACCGTGGCGTCGACTTCCTGCTT 3351160 28 100.0 33 ............................ CAACGCAACCTGATACGAGACTCCGTCGACACC 3351099 28 100.0 33 ............................ GTCGATGATCCGCTGCTCTCGGACGTCCAGGTC 3351038 28 100.0 33 ............................ CCGGTGGGCAGTGGGGTTTCGGCGTCACCGTCT 3350977 28 100.0 33 ............................ CGGGTCGAACCGGGGCGGGTTCGGGCCGAGGGT 3350916 28 100.0 33 ............................ CGGCGCGGTGAAAGTGCCCGAGCTGGACGACTG 3350855 28 100.0 33 ............................ CCGCATGCTGACGTTGGCGTAGACCTGCGGCGT 3350794 28 100.0 33 ............................ CAGCGGCGACCGGCCGAACGGGTTGAAGGAGTA 3350733 28 100.0 33 ............................ CCGCGTCCCCGTCGCTCAAGGTGGCCCGGAAGG 3350672 28 100.0 33 ............................ CACCAGGTCGGCGGCGGCCCGGGCGATGTCGGC 3350611 28 100.0 33 ............................ TGAGGGGGATCAACGCGTCGAAAGCGTCATTCA 3350550 28 100.0 33 ............................ CGACCTGCAGCGCTTGCGCTTTGCTGCTCGGCG 3350489 28 100.0 33 ............................ CAGTTGGCGAAGTTGCGCCAAAGCGCAAGATAG 3350428 28 100.0 33 ............................ CCTGGACATCGATCCGTGGTCGGACCTGTACGA 3350367 28 100.0 33 ............................ CCGGTGACCTCGACACGGATCGTCTCGCCCTCC 3350306 28 100.0 33 ............................ CGCCAGCGCGGTCTTGTGGAACGCCAGCGACAC 3350245 28 100.0 33 ............................ TCCCTGCTGGCTCGCGCGCGATGCTTACGAAAG 3350184 28 100.0 33 ............................ CCCGGCGAGGCGAGATGCACCCACCGGTGGGGA 3350123 28 100.0 33 ............................ CGGCGCCCCGATCAGGTAGTCGTCCCCGGTGTC 3350062 28 100.0 33 ............................ CCGCGCCCTGCCACGTCCAGCACTCGTCCGGGA 3350001 28 100.0 33 ............................ CTCCGCGCCCGTCACCTGACCCAGGCTGAGTTC 3349940 28 100.0 33 ............................ CGCCACGATGACGGCGTTCATCGTGACCACCCA 3349879 28 100.0 33 ............................ AGCTCGATCGATTTCGGATCCATGGCGACAACA 3349818 28 100.0 33 ............................ CGCTTCTGGCGGTGATGGAACTCGTACTCGGGC 3349757 28 100.0 34 ............................ CTGGACGACCGGGGCCGTCGCATCGTGTGCCTGG 3349695 28 100.0 33 ............................ GGCGACGAAGCAGGCCGTGAAGCGGGCACGGCG 3349634 28 96.4 33 ........G................... CGGCGGCTACCTGGCTCACCTGCGGCAGGGCCA 3349573 28 100.0 33 ............................ CCGTTCGCACTGCTCGGCCGTCCAGGTGGACGA 3349512 28 100.0 33 ............................ CAGCTCAAGGCCCTCGGCAACGGTGTCGTCCCT 3349451 28 100.0 33 ............................ CCACCCAGGCGCCAGTGCGGCCAGGCAGTTTCG 3349390 28 100.0 33 ............................ CGATCTCTCAGGTGTCGGAAAGTACGACACCTG 3349329 28 100.0 33 ............................ CCCCGAGCGCAACGCCGTCGTCCAGACCGCCGC 3349268 28 100.0 33 ............................ CCAGATCATCGGGTTCGAGGCGGACGCGATGGA 3349207 28 100.0 33 ............................ CCAGATCATCGGGTTCGAGGCGGACGCGATGGA 3349146 28 100.0 33 ............................ CAGGCCACCAAGGACCTGACCATGGCCATCGGC 3349085 28 100.0 33 ............................ CGACTCGGCGCGGTGAGCATCACCGGTGACCAT 3349024 28 100.0 36 ............................ CGCGCCACACGCACGCGCCCGCTCCTGGAGGGTCAG 3348960 28 100.0 33 ............................ TCACAAGGTTCGTCGCCGAAGCAGCCTGGCCAT 3348899 28 100.0 33 ............................ ACCACCCGCCGCGCCCGTGTCCTCGCCACGTTC 3348838 28 100.0 33 ............................ CCGACCTGGACATGTCCACGTCGAACGCCTGCG 3348777 28 100.0 33 ............................ CGTCCGCACCACGTACGAAGCGCAAGGCGTGCA 3348716 28 100.0 33 ............................ CGCGCCATGGTCACTGTCGCTGATCGAGTTGAA 3348655 28 100.0 33 ............................ GGCCGCGTTTTCAGGGCCGGTGAGGGTCACGAC 3348594 28 100.0 33 ............................ CTTGGCTGATCTGTTGGCCGCGATCATGGGTCA 3348533 28 100.0 33 ............................ CAACATTGAGCTTGGGCTGGAGTCCCTCTATGC 3348472 28 100.0 0 ............................ | C [3348463] ========== ====== ====== ====== ============================ ========================================== ================== 109 28 100.0 33 GTGCTCCCCGCGCCCGCGGGGATGAGCC # Left flank : GCTCGAACGCCCACTGCTGCGCACGGTCGGTGAGCACCACACGCGGGGCGATCGCGTCGTGTTGCTCGGTCCAGGTCTTCTTCTCGCACAACCCGTATCGACACTCGAAAATCCGCTTGCACCAACGGAGAACGACCGGCACACCGCCGGCCGGCAGGTCCCGCACGGTCACCGTGCGCCGGTCCTTGACTCGGGCGACCGCGCCGCAGGTCGGGCAGCCCGTCGGCTCCCGCCGCGTTTCCACAAGCAGGTGCCATTCGTCGTCGAGCACGTCGCTGGACACCACCCGGAATCCGGGCAGCACGAACACACCGGTAACGTCATCGCTCACCTGGGGCCTTCCTCACGGGTCGCATTCACTTGGCGGTGAACACGGATCGTGAGGACCCCAGGCCCCACATCAGCGCATCTCAGCCCCGGCGTGTCGCCCCGGGATCAAACCCCCACCCAGCTTCAAAGCGAAGAGCCCGTTTGTCCCGGTGAAGGTGTCCGAAACAAGC # Right flank : CCAACGGGACTGATTCCGCTGGCGCAGGTTGAGGTGTGGCTATGTCAACTTGAGCTGGCCCCGGGGTGACGGTTTGATCTGGCCCCGTTCGGATTGGTTGCTCGGCCGTGCTACTTGCTCTTTGCGGCTCGGGCGTGGGCGAGCCGGTAGCTGGTGGTCCCGGTTTCGATGATTTGACCGGCGAAGGTGAGTCGGTCGACGATGGCGGCGCAGAGCCGGGGGTCGGTGAAGGTCTTCGTCCAACCTGAGAATGCTTCGTTGGAGGCGATGGCGATGGCGGACTTCTCTTCTCGTTCGGTGAGGACCTGGAACAGCAGTTCGGCGCCGCGGCGGTCGAGTTCCATGTAGCCAAGTTCGTCGATGCAGAGGAGGTCGACTCGGCCGTAGCGGGCGATCGTCTTCGACAGTTGTTTCTCGTCGGCAGCTTCGACGAGTTCGTTCACGAGCTTGGACGCCAGGGTGTAGCGGACCCGGTAGCCCTTCTCGGCGGCGGCGGTGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 7 3358847-3356561 **** Predicted by CRISPRDetect 2.4 *** >NC_013235.1 Nakamurella multipartita DSM 44233, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 3358846 28 100.0 33 ............................ CCAGATTCGCACTGAGTCCGGTGGGGATCCGAA 3358785 28 100.0 33 ............................ CCCGGCGGCCTGCCGGCCGTACGGCAGGCCGTC 3358724 28 100.0 33 ............................ CATCGCTATCACGTACAAATGCTCGGGAACTCC 3358663 28 100.0 33 ............................ CGAGACCTTGACGGTGCTCGCGGACTTCGCCAG 3358602 28 100.0 33 ............................ CTCATCCCGATCCGTCAACGCCTCGCCGAATGG 3358541 28 100.0 33 ............................ CGCGCGCCACGGCTCCGGCGTGAACGGCGCCAG 3358480 28 100.0 33 ............................ CGGTAGGACCGGGTCCCGCCCGTCCCGGTCAGG 3358419 28 100.0 33 ............................ CGGAACGCCCAGCGCGACGAGCACCCCGCCGAA 3358358 28 100.0 33 ............................ GAACCGGGTCAGGGCTTCGCCGGTCTGCATGAC 3358297 28 100.0 33 ............................ CCGAACGGAGCAGCAGCAGTGAACACCATCCGC 3358236 28 100.0 33 ............................ CACGTTGGGTGCGTCGTCCAGGGGCACGATGAA 3358175 28 100.0 33 ............................ CAGTTGGGCGAAGAGCTGTGGACGATCAAGAAG 3358114 28 100.0 33 ............................ CCGGCAGTCGTCGTAGGCCCGCAGGTTGGCAAT 3358053 28 100.0 33 ............................ CGCCTGCGAAAACGAGAGCGCCCGCTTGGTGGC 3357992 28 100.0 33 ............................ CGCATCGCCCGAAGTCCAGTCATCGAACGACCA 3357931 28 100.0 33 ............................ CAGGACTGGCCGGCCATGGACTCGGTGAGGTAG 3357870 28 100.0 33 ............................ CTTGTTCGTGGTCGAGATGTTCGGGATCGTCAG 3357809 28 100.0 33 ............................ CTTGCGGGTCGAGGAGGACGAGAGCTACACAGC 3357748 28 100.0 33 ............................ CTCGCTTCAGGTTTACAACCCACCCACGGAACC 3357687 28 100.0 33 ............................ CTCGGGCTGTCTCCGCTGGCTCGGACCGGTGTG 3357626 28 100.0 33 ............................ CCGCCACGGGCAAAAACGTTGTCCGTCACCGTG 3357565 28 100.0 33 ............................ CACCCGTTCATCGCAGACGTTCATCGTCCCCCA 3357504 28 100.0 33 ............................ CGTTCCGCGACGTTCACCGCCAGAACATGGCCA 3357443 28 100.0 33 ............................ CAGGGCCGTGATCTTGGCCTGCTGGGTGAGCGG 3357382 28 100.0 33 ............................ CGGGTAGTGCAGGTACTGCCGCTCGCCACGAAC 3357321 28 100.0 33 ............................ CCTCACCGCACCGTGCGCAGAGTTCGCGGCGAG 3357260 28 100.0 33 ............................ CAGCCAGTCGCGGTCCCCGGCCGCGTTCGTGGT 3357199 28 100.0 33 ............................ CTCCGTCCCGACCGGGAGGGTGTTCAGCGGGAA 3357138 28 100.0 33 ............................ GCGGCACCGACCCACCCGCGAAAGGGAAGGAAC 3357077 28 100.0 33 ............................ CCCGACGCACCACGCCCGGCCAGCCTGCGAGCC 3357016 28 100.0 33 ............................ GCCTGGCCGCCCACGACCGGCACGCTCGCCAGC 3356955 28 100.0 34 ............................ ACCGCCTGCTGATGGGTCACCGGGTCAACAAGGG 3356893 28 100.0 33 ............................ GCCGCTGGTGCTGCCGATGCCGTGGACGGTGAC 3356832 28 100.0 33 ............................ CTGCTTGTCGGCGCCGCACGGATCATGCTCAGC 3356771 28 100.0 33 ............................ CGTTTGGCACTGCGTGGTGGTTGCGGTGTACGG 3356710 28 100.0 33 ............................ ACCCACTGCCCACGGAAAGGGAAACCATGGTTG 3356649 28 100.0 33 ............................ CTGGACCGGATCCTGAGCGCGGTCATCCTGGAG 3356588 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 38 28 100.0 33 GTGCTCCCCGCGCCCGCGGGGATGAGCC # Left flank : GACGACGTGGACGCCGACGTCATCAATCTCTGGGACGGCGATGATCGGGTCGTGTCCGGAGGGACCGGCTACGTGGAGTCGGACACATGGTCGTTCTGATGTTGACAGCGTGTCCGGCCGGCCTCCGTGGTCACCTCACCCGCTGGCTGATGGAGATTGGCCCGGGTGTTTTCGTCGGTCGTGTCTCCCACAGGGTCCGAGATCTGCTGTGGGACAGAGTGCTCGAACTCGCGAAGGACGGACGGGCCGTCATGGTCTACCCGGCGCGGAACGAACAGGGACTGGAATACCGCGTCCATCGCAGCTCGTGGAAGCCGATCGATGTCGACGGACTCACTCTCATGCTCCGACCGGACCTCGATCGTGCGCCTGAGCGCGGCGCGGCGCCCGTCGCCGATATCCGCCCGGGCTGGAGCAAAGCCTCTCGGATGCGTCGCGCGGCGACGAAAAAACCGAAGTAGATTCGCGCTCGTGGATCCCGTCCTTGCAGGTCCGCAAGT # Right flank : CCGTTTGTCGGCTCTACGCAATCAACCTGGGTCGGTGTGGTCGGATCCGTGCCGGTTGTTGATCTTGCCTGATGAGGCCGTGGTTGAGAAGTAGTCGCAGACGGTAGTTGGCGAACGATCGGTAGCCGCGGGCGATCCGTTTGGTGTTCTTGATCTTCAGGTTGAGGTTCTCGGTGGGTCCGTTGGATAGGGCGGGGTTGTCGAACCGGGCCAGGTACTCGGTCCGCCACGCGACCAGAGTGCGCCCGAAGCGGGCGATCTCGGGAACCGGGCAGGTCTTGGCCAGGGTGATGACCTGCTCGGCCGCGGCGCGTCCGGCGGCCCGGTCGGGGTTGGCGTAGGCCTGCATGACGTTCTGCGCGACGAGCCAGGCGGCGGTGATCTCCTCGTGCGTGTCCGCGTCGGTCAGTGCGGCCCGCAGTCGGACCAGTTGCCGGTCGGTGAGCCGGTCGTAGCGGCGCCGCAGGATCCGTCGTACCCGGTACAGCGGGTCGCCGGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCTCGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //