Array 1 769397-769946 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKHB01000001.1 Gardnerella vaginalis strain UMB0913 .16933_8_37.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 769397 36 100.0 28 .................................... AAAACGAAAATATTACTATTCGCATGAC 769461 36 100.0 29 .................................... GAATACTCGCAAAACCAATGAACAATGAG 769526 36 100.0 28 .................................... CGCGGTCTGATTGAGCGTATTTATTCCA 769590 36 100.0 28 .................................... TTATTGCGCGCACTAGGTTGATGCTTGC 769654 36 97.2 28 ................................T... TTAGGATACTGATCGCGATGCTGATTGT 769718 36 100.0 28 .................................... AGCAAACTATCACAGTAAAAGACATTGA 769782 36 100.0 29 .................................... GAAACTCATCACGCCACTAGCTCCAGTAG 769847 36 100.0 28 .................................... ACGATGAGGCTTCCCGTACCGTCACCGG 769911 36 94.4 0 ................................A..A | ========== ====== ====== ====== ==================================== ============================= ================== 9 36 99.1 28 CAAGTATATCAAGAGGGGTAAGAGCTAATTCTCAAC # Left flank : ATTTAACGGAGTTGGGCCAACTATACCTAGTGCTCTTAATGATATTGCACAGGCTTATGGAATGTATGTGGAAAAACAGTCAAAAGATTTCTTGGTTCCAGAATACAAGGGAGGATTATGAAAATTGATGAGGATAGTGGCGGAATGTGGTGTCTAGTAATGTTTGATTTACCTGTAGCTACAAAAATTCAAAGGAAAGCCGCTACTGATTTTAGAAATTTGTTGTTAGACATGGGATATGCAATGGTGCAGTTTTCTGTGTATGTTCGTTACACTCCAACTCAATCTGGTAATCGCTCAACCGTAAAAGCAATAAAAGAGAATTTACCACCATTTGGTCAAGTTAGAATACTGCATATTAGTGACCATCAATGGTCTTCTGCGCTGAGATATACTAATTTGCATCAGGATATTTCGTCTGAAACTCCTGAAATTGCCACACTTTTTTGAATGAAAAAATGCCTAAAAAGATTGAAATCTTGCCCCTCTTGAGCTTATAA # Right flank : AACGTACCCCCGGTGAGACTCAAACTTATTCATCTGATGAATGAACTTTACGAGGTACACCTAAATCGTCTGCTATATCGTCGTAGTCATCACCACATTCATAAGGGTCTAGCAAATTATAAGCTTCGATTAGCAACTCTTTAGGTGCGCTCTTGTGCAATCCATGCTTCTACTAAATAATAATCAATTGCAATAGACGGTTCGCCTGCTCGAATGGCACTATTGGCTGCTTCTTTAGAGAGCTTATCCATGTTAGGTTCTGCATATGGACGGAGTTTCTCAACCATGTCATAACAAATTTTCATCATGTCCATTAGCCTTTGACTACTCTAGTATTATCTATCTTATTGTATGCAGTAAGATGCATCGTCTATGTTTTCCTTCTTATATGTATGTATTTTAATTATTGATATTTAGATTATCTGATATACTTTTTATGGAATCTAGGGCTCCTCTTACCCTTAATCTCTTTCTAATAGAGTTGGTTTGGGGGAATGACT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAGTATATCAAGAGGGGTAAGAGCTAATTCTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 2 878942-880251 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKHB01000001.1 Gardnerella vaginalis strain UMB0913 .16933_8_37.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 878942 28 100.0 33 ............................ CATGAATTGAAACGTCTCCACCGTAGTAGACTG 879003 28 100.0 33 ............................ CGGGGTGTACGCAGTAAGTGAGTCTGATAGGAT 879064 28 100.0 33 ............................ CATTCTCACCAGCACGCATGTACGAGCCTTTAC 879125 28 100.0 33 ............................ CGTCCACAAGCTCACGCGCGTAAATATCAACCC 879186 28 100.0 33 ............................ CAGTAATTAATGCTTTTACAGACCCAAAAATTG 879247 28 100.0 33 ............................ TGCGAAGGATGCAAAGCGCACAAAGGACTATGC 879308 28 100.0 33 ............................ TGCGAAGGATGCAAAGCGCACAAAGGACTATGC 879369 28 100.0 33 ............................ CGCGCCTTGTTGAAAATCGCGCGCTCGCTTTTG 879430 28 100.0 33 ............................ CCGGCTTTTATTTAAGAGAGGTGCTATAGATAC 879491 28 100.0 33 ............................ CCGAGCGTCTTCAGATTGCTTTCGATTAAAGAC 879552 28 100.0 33 ............................ CTCTCTGCTGCACGCGTAAGCATCAAGCTCAGA 879613 28 100.0 33 ............................ CAAAGGGGACGGCACAAACACCGCCCCCTTTTC 879674 28 100.0 33 ............................ TTATAGGCGCGGCACTGTAAAGCCGTCAGATAT 879735 28 100.0 33 ............................ CGTATTGGCTTCGCAGCGCGTACAGTAGTGACT 879796 28 100.0 33 ............................ CGTCATCGGCTTTGCGTTCTTCTGTTTCTTTGT 879857 28 100.0 33 ............................ CTGCGGAATAACCGGCGTATTCCAAGTCCACGC 879918 28 100.0 33 ............................ TTCACCGTTAGATACGCTAGCACTCATATAGCA 879979 28 100.0 33 ............................ CCACACGCTTAGCGGTTTCGCCAGCATCCTTGA 880040 28 100.0 33 ............................ TAAGAGGTGAACTATGAGCCGTAGAATGCAACG 880101 28 100.0 33 ............................ TAAGAGGTGAACTATGAGCCGTAGAATGCAACG 880162 28 100.0 33 ............................ CATTTCTCAGGTAATGGGCTCACTTTTTGACCC G [880179] 880224 27 78.6 0 .........A...-........A..CAA | C [880245] ========== ====== ====== ====== ============================ ================================= ================== 22 28 99.0 33 GTCTTTCCCGCATACGCGGGGGTGATCC # Left flank : ATAATTTTATTCCTAATGAAATTATTGAGCTAACTGGTATTACATCCAACATGCTTGAATCTTATGGTGTCAGATTAGATTTAGCATTAAAAGAATTTATTGATTTTGTCGAAAAATTACCTGTACTTGGATATAACGTACAATTTGATATGTCATTTTTAAATTCTGCTTTATCTTCATTAGATGAAAGATTTGATCATTCTCTTTCAATTAACAAAATTTTTGATATTTCTCGTTTTGTAAAGAAAGAAAAGAAATTTTTAAAAAACTACAAATTAAAAACAGTGCTGCACGAATACAACATTGCTGAATCTGTTCCACATAGAGCTCTTCTGGATGCTAGATTAACAGCGCATCTTGTTTTTAATTTGACAGAATTGTTAAAATTTCTTGCGTAATAGTAGAATTGAAAGTGATGCGCAATAATGATAGCTTTGAAAAGTAAATAATTTTTGCTGTTTAATCTTGGAAAAATAGCTATTTTATTGGGATTTTTAAGT # Right flank : ACCTGCTTGAGCACAGCGCAACAAAATCAACTCCAAACGCGAGAAAGTCATCCCACGCTTGGAGCACAAATGTAAATAAAAATATAAAAATAGCGTTTTGAGCCAGCACTCGATATATATTAAGTGAGAATATATTCGCATCTATCAAAAGGCTGACTTTTCCATAAATCGCACGGAAACACACCACCAAACGACACGCCAAAATAGGCGAGGGCTTGCATTTGAGAATATTTCGGGTATAGTAGTTACTCGTGCTTCGGCGCTGACATTGTTCAGTAAAGTTGCATTGCGGACATAGCTTAGTTGGTAAAGCGCAACCTTGCCAAGGTTGAGACCGCGGGTTCGAGTCCCGTTGTCCGCTCTAGGTCCGATGAGTTATTCGACCTTACGGTGGGTTAGCCAAGCGGTTAGGCAGCGGCCTGCAAAGCCGTATAGATGAGTTCGACTCTCGTACCCACCTCGATTAAGCGGGTTAGCTTAATACACAACCGGGCGGTTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTTCCCGCATACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACACGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //