Array 1 2896653-2901419 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT907845.1 Halomonas sp. hl-4 chromosome I Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2896653 28 100.0 32 ............................ ATAAAACCGACCCGACGCCGCTGCGCGCGCTT 2896713 28 100.0 32 ............................ GCCCACGTCCACGCTGCCCGTTACGTCTAATT 2896773 28 100.0 33 ............................ GCTTGAAACGATACCCAAAAATTGCGCCCTACT 2896834 28 100.0 32 ............................ GACGACGATGACGGAAACCGTCGTCTGCTACC 2896894 28 100.0 32 ............................ TTCGCGCATGACCAACTGGTAAGGCACGGAAA 2896954 28 100.0 32 ............................ TCAGCCGGGTCGATTACACGACGCTCGATGAC 2897014 28 100.0 32 ............................ TTCCTCCCACTCACAGGACTCGAAGCCGCCAG 2897074 28 100.0 32 ............................ GTTGAAATGGGCGTGACCGGATTTGCGAAGCT 2897134 28 100.0 32 ............................ AATATAGTTGAACGCAGTGGTGATTGCCTGGC 2897194 28 100.0 32 ............................ ATTAACGCCGCCGGCGAACTGGAGGTAAATCT 2897254 28 100.0 32 ............................ GCGATAAACTGACGCTGACGTTTACTAAACGC 2897314 28 100.0 33 ............................ TCTCAAGCGTAGCGCGCGCCCTTCCGATTCGAT 2897375 28 100.0 32 ............................ AATGTCCACGCCGGGAACGTTGTTAACAAGGT 2897435 28 100.0 32 ............................ ATGCACTATTTACGGCAGAGGGACTATATTAT 2897495 28 100.0 32 ............................ CGTACCCGGTCAACGTCGCGATGACGGCGGCT 2897555 28 100.0 32 ............................ AAGCGCCGGGATACTTCGAGAACTCATCAAAC 2897615 28 100.0 32 ............................ TCGTAGCTGTTCAGGCTCGCTTCGGCGTGTGC 2897675 28 100.0 32 ............................ GTACACGGGCATTCCGTGCTTGTCCATCTGAC 2897735 28 100.0 32 ............................ AGCTTAAGCGGCTGGCCTGTCCGGTTTGGTGG 2897795 28 100.0 32 ............................ AGCACCGCAAATCGCGCTTTATTGGGCGCTGG 2897855 28 100.0 32 ............................ TGGGTGATGGCGACGACAAGCCGACATTAGTA 2897915 28 100.0 26 ............................ GCGCTGAGCGCGGGCGACGTGACCGC 2897969 28 100.0 32 ............................ GCTTGCTTGAGCTGTTCCAGCGCGCCGGGTAG 2898029 28 100.0 32 ............................ GGATGAATGGTACGAGCCGCCGATCCCGTTAA 2898089 28 100.0 32 ............................ ACCAACTCCACACTGTCGCCAATCGTCATGTC 2898149 28 100.0 32 ............................ TGTCGGCTGCATGTGCTCGGGCGTCGTGTCGT 2898209 28 100.0 32 ............................ ATGAACCAACTTCGTAGAGATATAGTGCGCTA 2898269 28 100.0 32 ............................ AAATGAAATCGGTTTTCTGTGAGCAATACCCG 2898329 28 100.0 32 ............................ GTACGTGGCGTTGAATTGCTCAGCTTTTAGCA 2898389 28 100.0 32 ............................ AACTTCATGCTGAACAGTAACCACAAAGACGC 2898449 28 100.0 33 ............................ ACCAATAAGGAGGTTACATGAAAGCCTATAAAA 2898510 28 100.0 32 ............................ ATCAAACATCGCCACTTTCTCGCCTGTTCCTG 2898570 28 100.0 32 ............................ TTGAGCGCCTTCAATAGATCGGCCCTAACTGG 2898630 28 100.0 32 ............................ TTGTCCGAATAACCGAAACGCTGACGAGGTAT 2898690 28 100.0 32 ............................ AGCTTGCGCCTTGCGAGATTGCAGGCGAGGTA 2898750 28 100.0 32 ............................ ATTCAACACGCAGCCAGAAGGCGGGTTAACGC 2898810 28 100.0 32 ............................ TTGACGCTGAATAGGAAGTTGGGCATAGGCAA 2898870 28 100.0 33 ............................ CGGGAACGCCGCAAAGAGGAAGCCGAAGCCGAG 2898931 28 100.0 32 ............................ TGAATATTCGCGGGTATCGGGGTCGTAGTTGC 2898991 28 100.0 32 ............................ ACACGGCACCGTTGATCGGCTCGGCTGAGAGC 2899051 28 100.0 32 ............................ AGACCGATGATGCGCAGTTTGAGCTTTGGCTT 2899111 28 100.0 32 ............................ ACTTGTCGACGTTATCCAGCCCCGCGCCGTAG 2899171 28 100.0 32 ............................ GCTACAGAGGCGGGAGCGCTGACGGCTAGCGT 2899231 28 100.0 32 ............................ ACCCGCGGCGCTCTAACCGCTTTCGCCAGAGT 2899291 28 100.0 32 ............................ GTTTGCCGGTGGCGGCGCCACTGAGCGCTATC 2899351 28 100.0 32 ............................ TCTAACCCTACCAGGGCAGAGTCTGGGTACGT 2899411 28 100.0 32 ............................ GTCTGTTGTTGAAGATGCTCGCGCGTCCGGCG 2899471 28 100.0 32 ............................ TCATTAGTCGCCGGTGTGACGCTGGCCACCCG 2899531 28 100.0 32 ............................ AGCCTGCCAAACCGGCATAGGCTGGTGTTGGG 2899591 28 96.4 33 ......G..................... ATTCTGCCGTTTGGCGGAAACATGACGGTTCTC 2899652 28 100.0 32 ............................ AACATGATCAACGTCAATGAAGCGACGGGCGA 2899712 28 100.0 32 ............................ ATTGTGCGGCGTATAGCCTGCGTAGCGTCGTC 2899772 28 100.0 32 ............................ TATCCCCAAAGATGCCCCTACAGTACGCCTCA 2899832 28 100.0 32 ............................ ACGACGCCAGCCGGTAGTCCGATAAATATCAC 2899892 28 100.0 32 ............................ GGAGAGAAATAAATGTTTAAGAAAATCGCAGC 2899952 28 100.0 32 ............................ TAATTAAAAGGGATAACTAACAATGGTTAATA 2900012 28 100.0 32 ............................ ACTCACGTTGTTTCTCTAAACGCAACTTGATA 2900072 28 100.0 32 ............................ TTGCATTGGTTGGCAGTCGATAACAATACCGT 2900132 28 100.0 32 ............................ AGAGAAGTATCCCACCAAGCCGACAACGGCGG 2900192 28 100.0 32 ............................ TGGTCGACAGAAGCTGCCCAATGATAATACCC 2900252 28 100.0 32 ............................ TCACGCAGCTGGGCGCGGATCTCCGCATTCAC 2900312 28 100.0 32 ............................ GTCGACAATGTCACCGGCCACGGCGTCGCGGT 2900372 28 100.0 32 ............................ GTGGCGCGTGACTTTGCCGGGGAAGTGCCCGA 2900432 28 100.0 32 ............................ AGGTAGGAAAAGGAGCACTCCACACCGTTCGG 2900492 28 100.0 32 ............................ TGGCCTGTGAAGCTTCTCCCGAGTCGATCGGC 2900552 28 100.0 32 ............................ CAAATAATTGCGGGCAACACGCGGTTAACCAT 2900612 28 100.0 33 ............................ CTGATAATCCTGGGCCGTAAGACGAAACGGTAT 2900673 28 100.0 32 ............................ TAACGGATTGGGCGCTTGAAATGGAATCAGAT 2900733 28 100.0 32 ............................ ACCCTACGAAGCCTTGAACAGCGAAGGGTATC 2900793 28 100.0 32 ............................ AAGGAAGCGTCGGACGGCGAATCCATCACTTC 2900853 28 100.0 32 ............................ AATGCCGCGCAGTGTTACAAAGTTAGCGTACT 2900913 28 100.0 32 ............................ TATTCAAATGATCGTAGTGCTGGCACGTAGCG 2900973 28 100.0 32 ............................ TTCTGGATACGCATCCCGCAGCCGATGGACGC 2901033 28 100.0 32 ............................ TGGCACGTTGCGCATTAGTGCGCCCAGGTCGA 2901093 28 100.0 32 ............................ AGGAGCAAGACCAGGGCAAGGAGGCCGACCAG 2901153 28 96.4 32 .............T.............. GCCATGGCGATTGGCATGCTCCCCGGCATCGA 2901213 28 100.0 32 ............................ TCAGGGTTCCAGCGCAGGCGGACATGCTCGCC 2901273 28 92.9 32 ..TA........................ AGACCCGCCGCGTGGTCGATGCTCACAACTCG 2901333 28 92.9 32 ..TA........................ TGATGGATTCAACCGTCATGGAGCGACACGAA 2901393 27 85.7 0 .....................-A..T.G | ========== ====== ====== ====== ============================ ================================= ================== 80 28 99.6 32 GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : CGCGTTTGCAACAGCTAATGAGTGCAGATTGGCTAACCGGCATGCGCGATCATACTCAGGTGAGTGAGGTAATCGCTGCTCCCGCTAATGCGCAGCATATTAATGTCGCTCGGAAGCAGTTCAATACAGGGAGCGAAAGCCGTGCAAAACGATATGCCAAGCGGCATAACATTTTAGAAGATGAGGCTCGGAAAATTTACGCCAAAGTCGCGGCGCGGGGTATAGAACTGCCCTTTGTGCAGATAAATAGTCGTTCTACCCAGCAGCGATTCAGCCTGTTTATAGAACACCGCAAACCTCAGAAAAACTCGGTGGCGGGTGCGTTTAACTACTACGGTTTAAGCAGTAATGCTACCGTTCCGTGGTTTTGACCCTTTTTTTCAACATGAAAATTGGTAACCAATAATCAAGCACTTAGCGGTATCGCTCAAAAAAGAGTGATACCGCTTTTTTCGGCTAAAGCTCTTTAACAATCAGCACATTAATTTTGATATGCTCTA # Right flank : GACATTTAAATGACCAGCCCTATTCCTCCGGTGCAGGCTCCATGGCCCGTTTGTCGTCGGGCAGGCGGACGGTGTCGCCTTTTTGGAGCTTGCCACGGCTGTCCAGGCGTTGGCCCTGGGCGTCGATGATGGCGACCACATCACCAATGCTGACGGCATCGTCCTCGCGGTAGCTGCGTACGTCGATGCGCACAGAGCAACCCTGATACCGCGCTGTGAGAATGTCGCCGGTGTGGGGCGTGGGGTCGAAATTGGCGTCTTTGGCGTAGAGCTGAGTTACGCTGGCGCTTCCTGGCTCATCCCATTCGATGTGTCGATGCATAACAAATTCCTTCTTCGTGTTGTGTTGCAAGGGACAAAGGTAAATGTCTTTACGTTAGCGTAGCCTATTCGCCGCTTTCGCTCTGGGCGGGTTGGCCGATGTGCTGGAACATAAAGGTAAGCGCCGCGGGCAGGCTGGCCCGCCATACTTGCCAGGTGTGTCCGCCGGGGTACAGGTC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //