Array 1 96264-98030 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGRO010000031.1 Halomonas sp. ISL-56 ISL56_32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 96264 28 100.0 32 ............................ GTACCGGCAGCCGAGGAAGAAGACCCGGAAGA 96324 28 100.0 32 ............................ AAGTGTTGGGTCTGACACTGGCAGGCTATGAC 96384 28 100.0 32 ............................ ATCTACTCCCGAGCAGGTGCGCGCTGCGCTGG 96444 28 100.0 32 ............................ GATTACGTTCCCCGCGCCGGTGCCGACCTGGG 96504 28 100.0 32 ............................ TAGCCGGTAGGTCTGATTGTTCTCTCGCACAA 96564 28 100.0 32 ............................ TGCTTATCATCCGCCACCACGCCTCGATCTTC 96624 28 100.0 32 ............................ GTATAGCGCTGTCCGTGGGGGCCGTGGCCTGG 96684 28 100.0 32 ............................ AATGTAACGCTGCCCTACACGCCACTCTCAAG 96744 28 100.0 32 ............................ ACGGAAGGCGCGCTCTTCACTCATGCCGCACC 96804 28 100.0 32 ............................ TCAGCCGCTCGCTATTTGCGTGCCAATGTAAC 96864 28 100.0 32 ............................ CTCTAGTTGTGCTTCGATTCCCATCTTTGTAA 96924 28 100.0 32 ............................ TTTCCGCCAGTCCTGTTCCTGCCGAGCGATGC 96984 28 100.0 32 ............................ ATTACATCGCGGCTTCTGGGTTCCAGCGGATG 97044 28 100.0 32 ............................ TGAACTCAGGCCTCCGACATGAGCAGTGATAG 97104 28 100.0 32 ............................ TGCCCCCAGTACAGCCGGTTTAGCGTTAGTAC 97164 28 100.0 32 ............................ ACTGGCTTGATTCAGTTTATGCCCGCTACTGC 97224 28 100.0 32 ............................ TGATCCCTCAGCAACCGTTAGAACAAGAGCGA 97284 28 100.0 32 ............................ TTACCCATGCTCCACCTCCGCTAGCCGCTTTC 97344 28 100.0 32 ............................ TCCTTCGCTTCGATGAACGCCAGCGCATGCAA 97404 28 100.0 32 ............................ TCAGGAACGTGCTTCACTAAAGCAGGCTGCCA 97464 28 100.0 31 ............................ TACAGAAGGACGGTGCCAGCCAAGCGTTTCA 97523 28 100.0 32 ............................ AGCAGGATATTTATGGCCAGCGAGAATATTTT 97583 28 100.0 32 ............................ GACACGGTCGACCAGCTGGCCCATCTGCCCTG 97643 28 100.0 32 ............................ ATGCCGATATATCCTGCGTTGCTTCGGGCGCT 97703 28 100.0 32 ............................ AAAATGCTAGGCATCAGCCGCCAAGGCTATTC 97763 28 100.0 32 ............................ AATGTCAGTTTAAACGCCTCGCTGCTGACGAG 97823 28 100.0 32 ............................ ACCCGGAAGTGGGCCTGGAGGATTACCGGCGG 97883 28 100.0 32 ............................ TTGAAGTAGCCGATTAACTTGGTTATGTCTTC 97943 28 100.0 32 ............................ CAAAGCCGATCGCCGGGTTGGCCATAGGGGCA 98003 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 30 28 100.0 32 GTTCACCGCCGAGCAGGCGGCTTAGAAA # Left flank : CACACTGATTGACGCTATCCGTGATGCAAAAGCACTGACAGAGCAGGCTGTTATTCATTACCCCCGGGCAGTGCCGGAAGATTACGATGGGTCGTGGAGCATCTATCAGCGATTCCGTATTCCGGCACGCCGTTCAGAGCGCATACCAGGCCGGTCGGTTCGGCTCAAGCGCGTTCAAGAGGCCAACGCAAATGAGCTCTCCTTCTTTCAAATGCAGAGCAACAGCAATGGAGGTCGGTTTCGGCTTTACTGGGAAGTAAAACCCCATTCGGACGGCATGTCTGAAAATAATGAGGCACACCCAGACTCCTGGGGACTTTCAACAACGACAAGCCCAATACCCTTACCAGACATCAGCTAGTCAATTTGACCCTTTTTTTCACAGACCTCTACTCATCTATACAAAACAATTACTTAGAGCATGTACAGAAAAAAGGGTCTTTTGCTCTTTAAAACTGCAAACATCTGATATTATTAAGAAAGACAGGGTTAAATCTCTA # Right flank : AGATAATCGTGCAGGCGATGCGTTGTGCGGCAAGTTCACTGCCGTGCATGTCAATCATCGCCCTGCGCTCATACAGCCAAACCTGTGCTAACATTTGTACACACGCGTAGATTTGAATAGGAAATCACTATGGACACCAGAATACAGTTTCGTGTTGATGAAGAAACAAAACGCTTAAGCCAACAAATGGCTGAGAGCCAAGGGCGCACATTGAGCGATGCCTGCCGGGAATTCACTGAGCAGTTGGCTGAGCAACAGCGCAAGGTGTTATCTCACGATGCATGGTTGACACAGCAAGTTAACCAGGCGTTTGAAAAACTTAATGAGGGAAAAGCTTCCTTTATTGATCATGAAAGCGCGAAAGCACAGATGACTGAACGCAAAGCTAAAATCCGTCACCGAGCTAAACCATGATTTTTTGGGAAGAAAAATCGCTTAATGATCGGGAGGTAATCTTCGAGTTTCTTCACGACTTTAACCCATTAGTGGCTGAAAAAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCGCCGAGCAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.50,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 155371-153660 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGGRO010000004.1 Halomonas sp. ISL-56 ISL56_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 155370 28 100.0 32 ............................ TGAGATTTTGCGCATGAATGCTGCAGTACAAG 155310 28 100.0 32 ............................ TCGCTTAAAACTATCTCCGACTCTATCAATCA 155250 28 100.0 32 ............................ TCAAACGCTTTATTGAACTCGCTGTAATTGAT 155190 28 100.0 32 ............................ AGAACGGGCGCGGGGTTCTGGTTGAATCGCCG 155130 28 100.0 32 ............................ AATATGGATCTAGTTGGCCCTAGTGGTACTGA 155070 28 100.0 32 ............................ GCCACCACGCCTCGATCTTCGGCCACCTGCTG 155010 28 100.0 32 ............................ CAGTCTGTTCGATACGCTAGAGGATGATGCCG 154950 28 100.0 33 ............................ ATGCACTCCAAGCGCTTGAGCTACGGGAACGGA 154889 28 100.0 32 ............................ CGCTCATGTTCGGCGGCATTACTTGTCAAATC 154829 28 100.0 32 ............................ ACTGTAACGCTGCCCTACACGCCACTCTCAAG 154769 28 100.0 33 ............................ ACCCCGGCTAAAACGCGGCGCGCATGGCAAAAA 154708 28 100.0 32 ............................ ATGGCCCCCAGGAGTCCGCAGTTGCACCCCTG 154648 28 100.0 32 ............................ TATTGGTAGAGTCAAGGGGTGTCGCCGGTGTC 154588 28 100.0 32 ............................ AAAGAGCTCACCTGCACGCCAAAGGGTGTCCG 154528 28 100.0 32 ............................ TAGCGTCGACATTGCGTTCAACGAAGCTATCC 154468 28 100.0 32 ............................ CGTTATTCAACAGATGCTAGGGCATGAACAAA 154408 28 100.0 32 ............................ GTGAAGAGAGGGGTTCAGGTTTAGGGGTTCAT 154348 28 100.0 32 ............................ GCGAACAGCGCGGAAGCATAATCACACTGAGA 154288 28 100.0 32 ............................ AGCTCAAGCCGACGAATTTCCGCTGAATCGCC 154228 28 100.0 32 ............................ AGCAGCCTGGGTATCTTCATTGCCAGAAAATT 154168 28 100.0 32 ............................ TAGCCACGCTGAATAACTTCGGCACCGTGCGC 154108 28 100.0 32 ............................ GCACTCATGGAAGTAGTGCAGTTCGCCCGAGA 154048 28 100.0 32 ............................ TGGTAGATCAGCTTTGCCGTGTTGACGAGTAC 153988 28 100.0 32 ............................ TCAAGAGAGCCGCCTGTCGCCTTGCGAACGCA 153928 28 100.0 32 ............................ AGCCCCGCCGAAACCCGAAAAGCGCTTGAAGT 153868 28 100.0 32 ............................ TATCGTCATGAGGTGTGCATTTCGGTGTTAGA 153808 28 85.7 32 .CT........TG............... TTGCGGGTACGGCCAGGAATCCCCAACCTTCT 153748 28 96.4 32 ............G............... ACTCCGTAAGCGGTAGTTGCTCTAGCGGCACC 153688 28 92.9 0 ....................T.....T. | T [153666] ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.1 32 GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : CGCGTTTGCAGCAGCTAATGAGCGCCGACTGGCTAACGGGTATGCGCGATCACACCCAGGTGAGCGAGGTGCTTGCAGTACCTGCTGATGCTCAACACGTCAACGTGGCGCGTAAGCAGTTCAATACGGGCAGTGAAAGCCGAGCCAAGCGCTACGCTAAACGGCATGATATTTCCGAAGAAGAGGCGCGGAAAATTTACGCTAAGTTGGCCGAACGGCGCATTGAGCTCCCCTTTGTGCAGATCAATAGCCGCTCCACACAGCAGCGTTTTAGCCTGTTTATTGAACATGGCAAACCGGCCGCGTCTGCCACGGATGGCACGTTCAGCCATTACGGGCTAAGTCCCAACGCCACGGTGCCCTGGTTTTGACCCTTTTTCTCAGCAATAAATTAGGCCACCAATAATCAACCACTTAGCGGTATCGCTCAAAAAAGGGTGATACCGCTTTTTTCGGCTAAAGCTCTTTAACAATCAGCACATTAATTTTGATATGCTCTA # Right flank : GATTTAAGGTATGTGCATCTGGCACCGCTGCGCGGTGCTTCCGTGGGTGCACTGACGCTTACGCGCTACTCGGAATGTGCATTGGGCGAGCAAGATGGTCTGTTAACGATGATATGACTTAATGCTCGACAGATTGAAATGTGACTGCTTCATCGAAACCGTACATGCATTGCTCTGGAAAGCTCGCTACCAGTCTCAATCGCTGCTGCGCGGCGGGCATCTCCATACGCTTCGTTCATCAGCTCAGGTAGTAATGCTTTCAAGCTGGGGTTGTCGTTAAGCAGGCGGGTTGTTTTGGCTTGGGCATCGATGATGGTCAACCGCCAGCTACGTGGGCGCCGTTCAGGCTGGTGATCCCATTTAAGCAGGTGCATTAACAGGCGAGCCATTTGGCTGACCAGCACGCACCGTTCGGTTTTGCCCATGCTTTCAATCTCCTCGGCCAGATGCTTAAGATCAAGTTGTTCCAGTTTTCCTGCCCGCAGAAATCCTGCTTGCTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //