Array 1 28560-31109 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLLL01000027.1 Pseudomonas aeruginosa strain WH-SGI-V-07061 WH-SGI-V-07061_contig23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28560 28 100.0 32 ............................ ACCTTGTTGACCGCCCAGCGGGCGAAGTTCGG 28620 28 100.0 32 ............................ ACCGGCAAGGGCACCGGCAGTCAGGCGTTCAT 28680 28 100.0 32 ............................ ATCGGGCAATCTCCGAGCATCTGGCCATCCCG 28740 28 100.0 32 ............................ AGGAACTGCGGAACCGGAAGCGCATTGATCAA 28800 28 100.0 32 ............................ CTCCAGAAGCATCGCGCACGTCTTCGCCAGAT 28860 28 100.0 32 ............................ ATCAGAGTTCGTCTTATTGCTGGTCGTACTGG 28920 28 100.0 32 ............................ TTGATCGCCGGATGATCCGCCTTGAACTCACG 28980 28 100.0 32 ............................ TATGACCGGAGGCTGTTTCAGTGGGTGCAACG 29040 28 100.0 32 ............................ TGAAACAGCCTCAGCTCGGGAGGGAGGGACAG 29100 28 100.0 32 ............................ AGGAACTCATCACGTGACGACAGACAGAACGG 29160 28 100.0 32 ............................ CTGGAGCGACCGTCAAAGGGGTTAATCGAGAA 29220 28 100.0 33 ............................ CAGTTCTGGCCGCCTGACCGGCAGCCGCTGTCT 29281 28 100.0 32 ............................ GGCTTGTCAGCGCTTGCGGTGACAAACGGAGT 29341 28 100.0 32 ............................ TACCGCATGGTTGAAGAATAAGCGTGACGTCA 29401 28 100.0 32 ............................ TCCAGCGACGTAATGACGCGCTCCAGGAAGGC 29461 28 100.0 32 ............................ ATGAAGCGAATCGACGATGACAAAGTGCTGGC 29521 28 100.0 32 ............................ GATCCCGCTGAGCCGCCATCAGACCCCAAGGA 29581 28 100.0 32 ............................ TTGGCGATCAACTGATCAGCGATAGTGTTGTA 29641 28 100.0 32 ............................ TGAATATCGCTCAACCCTATGACGTCACTCGC 29701 28 100.0 32 ............................ GATGACGGCACGAAGTCCAGCATGGTCGGCAA 29761 28 100.0 32 ............................ GGCATCGACTCGCCGGACCTGCTGAGCCGGCT 29821 28 100.0 32 ............................ TTATGGAGCAAGCCATTTCATCAACCATGAAG 29881 28 100.0 32 ............................ TATATCCGGGCGCTCAGCACCCAGCGATATGG 29941 28 100.0 33 ............................ AGCGATCTCAAGGCCGGAGCCGAGCGCCAGCGT 30002 28 100.0 32 ............................ AGTTCCAAGTCGCCTCGGCGCACTGCAAGCAG 30062 28 100.0 32 ............................ ACCTTTCCTTTTGCCGGCAGCAGTCCAATCGA 30122 28 100.0 32 ............................ ACGCCTCATCCATCCAGTAGATGAAGCGCCGG 30182 28 100.0 32 ............................ CGTTTGGCACGGACAAGGTTCCGGGCTTTGAC 30242 28 100.0 32 ............................ ATGCAGAGGGTAGCTACTGCACGAAATTTCGA 30302 28 100.0 32 ............................ ACCTGGGGAATGTCGAACGGGAAATCCTGATA 30362 28 100.0 32 ............................ CAGAAGCGCCGGCCGTTGGCGAAGAACCAGTA 30422 28 100.0 32 ............................ AGTCCGTCAGTTGACCCGGCGACGGCGATTGA 30482 28 100.0 32 ............................ ACCAGATCGGGAACCCTGGGCGACATATCACC 30542 28 100.0 32 ............................ ATGAGCTGCCCCCTTATGCGCCAGTGCCGGTG 30602 28 100.0 32 ............................ TGTGATCGCCGCTACCTCCATCATAGAGAAGC 30662 28 100.0 32 ............................ AAGTTCCGGGAAGCGGTCGAGCCGAAAGCTAT 30722 28 100.0 32 ............................ ACGAAGTAGAAGCTGTCCGGCTCCAGCGTACC 30782 28 100.0 32 ............................ TGGTTCAGGATGCGAGCGCGGACCCGACAGTT 30842 28 100.0 32 ............................ AGGATGAACAGGTACAGCAGTCCGCCGAAGAG 30902 28 100.0 32 ............................ GCGATCCACGGCATCAGCCACGAACAGGCGAT 30962 28 100.0 32 ............................ TGACTGCGGGGCTGCACGACATAGTCGTCGAC 31022 28 100.0 32 ............................ TCGTAGTGGCCCCACGTCGGCGGTAGCTCGCC 31082 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 43 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTAGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGGCAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGTCGATCCTTCACTCCAAACGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 40745-39637 **** Predicted by CRISPRDetect 2.4 *** >NZ_LLLL01000027.1 Pseudomonas aeruginosa strain WH-SGI-V-07061 WH-SGI-V-07061_contig23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 40744 28 100.0 32 ............................ ATTGGGCCAGTTACTCCAGCGCCGGGCGGCTC 40684 28 100.0 32 ............................ TGGTCCTGGTCCTGGGCGCTGTCGCTGCATCC 40624 28 100.0 32 ............................ GTAGTTAATCGTGTAATTAGTTTCCGTAGTAG 40564 28 100.0 32 ............................ CAGGTGCCGGTGCTCGGTCACGAACTTGGCCC 40504 28 100.0 32 ............................ AATGCGACGGCGAATATCGCCCTGCAATGGAT 40444 28 100.0 32 ............................ TGATCAAGATTCGCGTCGATGGCTGCAAGCTC 40384 28 100.0 32 ............................ CTTGACCTGCCGGGACTCCCAAGGGGCTGGGG 40324 28 100.0 32 ............................ TGCGCGAGTCCAAAGGCGATCCTGTTGGTAGC 40264 28 100.0 32 ............................ TCGCGGACTGGGATGAAATGCGTAAAGAGCGC 40204 28 100.0 32 ............................ TTTGCCAGAGCAAGGGCGTGCTCACGGCTGTT 40144 28 100.0 32 ............................ ACCCAGCAGCAGGCATTCATCCAGGCCGTGAA 40084 28 100.0 32 ............................ AGGTCTCAGCAGAGGCTAAAACGGCCGGCATC 40024 28 100.0 32 ............................ ACGCGATGGCGGAGACGGCCTGCTTTCAAGCT 39964 28 100.0 32 ............................ ATGTAGGCCGACTGCATGTTGGTCTGGTAGAT 39904 28 100.0 32 ............................ TGGGTGCGTCCACGCAGCAACTGGAAGATCTC 39844 28 100.0 32 ............................ ACGTCTGAAACGACTTCACCGGGACGAAGCGG 39784 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 39724 28 92.9 32 .....................A..A... TGTCTCGAAGTTCATAAGCGGGCTTAGGGCGA 39664 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 19 28 98.3 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAGAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGCTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCATGAAGGTCGTCCGCCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //