Array 1 884520-885413 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028107.1 Fusobacterium necrophorum subsp. funduliforme strain 1_1_36S chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 884520 36 100.0 30 .................................... GAAGATGAGCAGTGGGTAGATGTATAAATG 884586 36 100.0 30 .................................... CAGTTGCCAATCCTTGTTTCGCTTCTCCAA 884652 36 100.0 30 .................................... CATATCAAAATGTCTTAGAAGCCCTAAGAG 884718 36 100.0 30 .................................... AAGAGGTGTTTGGATATCAGGAAAGGTATA 884784 36 100.0 30 .................................... TTTTACGTCAGCTTTGCCAACGCCAAGTTT 884850 36 100.0 30 .................................... GAGGGCTTCCAAATTCTAAACTATAAAGGG 884916 36 100.0 30 .................................... TAAAACTATTGTAGCTATAAAAAGCATAGT 884982 36 100.0 30 .................................... GAAAATTTAGGAAACTGTAATTTTTTTTCA 885048 36 100.0 30 .................................... AATGGGCAAGGATATCAAGATGTTCCATTT 885114 36 100.0 30 .................................... AGATATAGGCTATACAACTGCTAGGCAACA 885180 36 100.0 30 .................................... TAGAAGAACTTTTGATGAATCTGGAAACTA 885246 36 100.0 30 .................................... TCGGAGTATGTTGTTCCGACTGTTAACGTT 885312 36 100.0 30 .................................... AAAAAAAGAAAATGGGAAGACCTGTTATTG 885378 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 100.0 30 GTTTGAGAGTAATGTAACTTAAGATAGATCTGAAAC # Left flank : TTTTTCATCAGCTAAAGGAATATACTCTAAAAGATGAAATATATGCAGAAAAATTGGAAATGGAAGGAAGTTTGAGAAGCTTTTTATATAAAATAATAGATAATTTTTCTTATCCTTTGGAGATAGCCGAAAATATTGAATATGAGGACCTGTTTAAATTATTTCATATTCATATCAGTGAAAATTATGATAGTTATTTGGAAAAAATGATAGACTATTTGACATTATCATATGAGTTAGGTTTGATGAAATGTGTCATTTTTGTGAATTTAAAAACAATTTTTGGAGAAGAAGAATGTTGCAAATTATATCAACAGTGTTTTTATAAAAAAATTCCGATAATTCTCTTTGAAAATAGAGAATATGAATATACAATAAAAGAAGAAGAAAAAATTATTGTTGATTTCGATTTATGTGAAATTCGACTTTAATTCTAAAGTTACAACTACTTATCGTAAGAGTAGGTTATTCTTCTCAAAGTACGAATTTTCGTTTTTGAG # Right flank : CAGTTAGGGCAAGCGAAAAAAGAAAAGACAAAAAGACATTTAAAATATATGTAACTGAATTAGACCGTGAAATTGAGTATAATCCTATTTTGCGGAAAGAATATCTGGATATATCCGGTACAAAAGATGAAGAATTATGAAATTATATACAATCGCTGCCTGATTTTTAGAAATGATGATTTAATAAGAAAATTAAAGTGTGAATTGAATCTGGTTGAAGTTGTAGATAAAGTTTTATCCGCATCTTCAATTTATGCTCTGACAAAATTAATTTTACAGCAATCTGAAATCGAAAATGGGGCTATATCGAAGTATGTAAAGTTGATGGAAAATGATATAAAAAACTAACCAAAAATGATTGGAAAATATCTACGATTGCCCACTATCTACAAAAAGGGTATAGTCTGAGAGAACTTCAATCATTGAGTTTCATAGAATTGTATTTTTTATATCAAAGTATTGACTTTTTTAATCATACTGGAGTATAACGAAAGGGGATG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAATGTAACTTAAGATAGATCTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 1232435-1233063 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP028107.1 Fusobacterium necrophorum subsp. funduliforme strain 1_1_36S chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1232435 30 100.0 37 .............................. GCAATAGGAGTGAACGTATATTCACCGTTCACTCTCC 1232502 30 100.0 36 .............................. TGTGTATTCCCCCTTTATTTTGTAGTTCTTGATTAA 1232568 30 100.0 35 .............................. TACTAACACGAGGGTTTTATAAAAAATCCTCACTT 1232633 30 100.0 37 .............................. TAAATATCCCATGTTCCGAAAAGGAACTATGGGTTAG 1232700 30 100.0 37 .............................. AGACGCCGACCACCTCTCATCCACGCAACACGACCCA 1232767 30 100.0 38 .............................. GATGGTTCTAGCAACAATGGACTTCTCTTCATGCTATC 1232835 30 100.0 37 .............................. ATGCTTCCAAAGAAGCCTATTTGGGACAAAAAAACTA 1232902 30 100.0 36 .............................. CATCAACTGTGAGTGTGAGAAACATAGCTTGCTCAC 1232968 30 100.0 37 .............................. GCCACGCTTGCATCTTCTGTTTCTTCATTCGCAGAAA 1233035 29 93.3 0 .......................-.....T | ========== ====== ====== ====== ============================== ====================================== ================== 10 30 99.3 37 GACTAAATCCAAGTAGATTGGAATTTTAAC # Left flank : TGAAAAATTTAGATACTGTGAAGAAAAATTATTGAATATTTCATTTTATAATCATCAAGATAAAAAGAAAGAGGAAGGTATAAGAGTATTTCTTATAAGAGATAAAAATAGTGATAATTTTAAATTTGAATCAATATTAGACGATGGCAGTAATAAGATATTTATTTCTAAAAATGGAAAAGAAATTACAATACAATGTTGTGATAAAGTATTAGAAACTTTAATGATAGAAAAAAATACTTTAAAGATAAGTTCAAATGGAAAAATTATTTCTTTAATTCCTCATTATTCTTATTCTATTGATGTAAAGTATTAAAAAAATTTTTTGTCGACCTTTCATAGTGTAAAATTTATGCTAGGTCGACAAGAATAGAAAGGCTTAATATTTATGCTTTTTATAATTGAAGTTGTATTTGAGGCATTATTTTGATATAATTTTATTCATATAGACAATAAGGCTATTATAAATATTTCAAAATATTAGAGTAATAGTAACACTG # Right flank : TATTGTTAATAAAAATCTTTAGAAAATAACTTTAAATAATAGATTTTTTTTATTCAAAACTTGAAATAAGATTTACATAAAAGCTTAAAACGAGAGATTCGATTCTCTCTTTTTTCATAATTTCTTTCTTTTTTATATAAAGTTTGCTATACTGAAAGTGAAAACTCGTGAAAGGAAAAAAAGCATGGAAAAAGAAAAAATCAAGGAAATGTTGGAAGAACGCTTTAAAGTAATTCCTGCATACCCTAGAAAACGGCATATTCTTTTTTGGTATGATGGGCAGAAAGCATTTCAAGATATTATAGAGGAATTACAGCTTGATAAAGTAAAAATCTTTCGTTTGCAAAAAGGAATCAATCGAAATGGAGAAGAAATTGATACCAATCTTTTTAAAATAAAATATACTTTGGAGATTTTGGATACGGATTCTCATTATTTAATTTATAGTGCTAATCCAAGACCTTCTAAGCATGAAAATTATCTCTTAGATATAGAAAGCT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GACTAAATCCAAGTAGATTGGAATTTTAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.50,-3.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [78.3-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //