Array 1 99798-100160 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP063120.1 Haemophilus parainfluenzae strain M1C137_2 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                  	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	=================================	==================================	==================
     99798	    33	 100.0	    34	.................................	GTATTTATTATCAAGAAAAAGATCCTGATGCGAA	
     99865	    33	 100.0	    33	.................................	CTCACTGGCATAATGCCAACGGTACATTCTACG 	
     99931	    33	 100.0	    33	.................................	TTCCTGACACTAACAAGAAATTCCCCGTCATCG 	
     99997	    33	  97.0	    32	................................T	TAACTGGTGCGTTTAATATGGGCCTCAAATCT  	
    100062	    33	  93.9	    34	...............C................C	CTATCAATATCGTGCGCATGGAAACAGATTTACA	
    100129	    32	  84.8	     0	C...........-.......A.AC.........	|                                 	
==========	======	======	======	=================================	==================================	==================
         6	    33	  95.9	    33	GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA	                                  	       

# Left flank :   TTGATGAGATAAACTATGTTAATGCTGATTACTTACGACATTTCTTTTGACGATCCAAATGGGCAAGCGCGATTGCGCCGTATCGCAAAACATTGCTTAGATTACGGCGTTCGGGCGCAATATTCGGTATTTGAATGCGATGTCACGCCTGACCAGTGGGTCATGTTGAAAAACAAGCTGTTGGAAACCTACGACCCCACATGTGACAGCCTGCATTTTTATCATTTAGGCAGTAAATGGCGTAATAAAGTGGAACATCATGGCGCCAAACCGGCCGTTGATATATTTAAAGACGTACTTGTCATTTAGTTCGCTAACCTATTGTTCTCATTAAAATCCTGATAGGATAGCGATCTTCGTTTTCTTTAACAATTTGGATGAATTAATCTATTTGTATAACGACAATGTGGCGGTTATACTTACCAAACTCCTTATCATAAAATTAGTTAGCGAAATACAGTGTTTAATACACTGATTTTTCTTGCTTTTTTATGTAGGGA
# Right flank :  AAATCTTAATAAATTTGAATAGTATAATATTTACCTTCCTACTCTATCTCTCAACCCAATTCATACCCAACAACATTTCTCCCTTGTATTTCCCCCTTATTCGCTCTAGACTATGCCCCATTTTTAGCTTTCATTATTTATAATTATGCGTGTTTCTGACTTTCATTTTGACTTACCAGATGAGCTGATTGCTCGTTATCCTAAAGAAGATCGCTCTTCTTGCCGTTTGCTACAACTCAATGGTGAAAACGGGGAAATTTCTCACCGCACTTTTACCGATGTATTAGATTTAATCGACGAAGGCGATTTATTGATTTTTAACAATACGCGCGTGATCCCTGCTCGTATGTTTGGTCGAAAAGCCAGTGGCGGGAAAATTGAAGTATTAGTGGAGCGTGTGTTAAGTGAACATCATTTCTTAGCGCATATTCGCTCATCAAAGGCCCCGAAAGAAGGCGCAGAATTATTTTTAGGCGAAGATAAGCTCGGTGAAAATAAGG

# Questionable array : NO	 Score: 6.06
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [5,8] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GCAGCCACCTTCGGGTGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-5.30,-3.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-6] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.28,0.37   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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