Array 1 1014320-1011493 **** Predicted by CRISPRDetect 2.4 *** >NC_015672.1 Flexistipes sinusarabici DSM 4947, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 1014319 29 100.0 36 ............................. AATTTCAGAGGCACACGCTTTAATAATGCTCAAGAA 1014254 29 100.0 36 ............................. AGTCCCTTGCTACGTATTTCATCTTTCTGTCCTCTG 1014189 29 100.0 36 ............................. GCTGATGTTAGAGAGGTAGGCATTGTCGGTGCTGTT 1014124 29 100.0 36 ............................. AGTTGCAGAATTCTGTAAACAACGGCAAGATGAACA 1014059 29 100.0 36 ............................. CAATTGGATAGTATAGATGTAACGATAAACGGTATT 1013994 29 100.0 36 ............................. TAAAAGCTTCTACCTTATCTCCAGACCTAACAAAAT 1013929 29 100.0 35 ............................. GCGTTCTTAGTAGCACTTTGGAAGGCAGCACGCCT 1013865 29 100.0 36 ............................. CAGCTTGACTTATCATCTGTAGGGACGGTAGATAGC 1013800 29 100.0 36 ............................. TATGATAATGGCCTTATAAGTTTTACTATTTCAGAC 1013735 29 100.0 36 ............................. AGGACTTGAAAAAAGTCCCGAAGAAAATAAGAGAGT 1013670 29 100.0 36 ............................. AATAAAAGCAGTATCTTCATATTCAGCGTTAGCAGT 1013605 29 100.0 36 ............................. ATTGTTGTTGAAGTACATTAGGGTCATTGCAAGATA 1013540 29 100.0 36 ............................. ATAAGAAAGCAATACGGTATTAGAGACGCTTCTGTA 1013475 29 100.0 36 ............................. TAGTGAGCATTAAAGGAACTATGTCAGCAGTAGCAA 1013410 29 100.0 36 ............................. AATGAAACGAACTATATTAAATATGCAGGTGAGAAA 1013345 29 100.0 36 ............................. TTTGCGGAAAAAGGAATCGCTTTTGGCTTCCTCCCG 1013280 29 100.0 36 ............................. TCTGAACTTACTTCGGTTTTTGTGTCATAATATGTT 1013215 29 100.0 36 ............................. AAAAATGCCGTCAAGTTTACCGAAAATTCCTTCAAC 1013150 29 100.0 36 ............................. TCGCTTGATTCAGGAACACGCAATGAAACGTGTTCC 1013085 29 100.0 36 ............................. ACTCTTTCAGCAATTTTAGTCAATTGTTTACATAAA 1013020 29 100.0 36 ............................. CATTTCGGGCATTTGTTCTGCTTTATAGAAGACAGC 1012955 29 100.0 36 ............................. TTAAAATAAATGTAGGGGATAGAATAGCACAAGCAG 1012890 29 100.0 36 ............................. ATTACATGGAGCGAGGCTAGAAAAGTGAGACGAGAA 1012825 29 100.0 36 ............................. AACGGAATCCTGCATTATTCGATATCGTACAAAGTG 1012760 29 100.0 36 ............................. ATTAAAGGGCGGAAGCAGAAGAAGATTTACAAGGCA 1012695 29 100.0 36 ............................. GGCAACACTCAGAAGCGCACAAAATCTTGAGAAAAA 1012630 29 100.0 36 ............................. CTCATAAGTACCTAATGTTTTATATTCTCCCAACTC 1012565 29 100.0 36 ............................. CGTATTTAATATACGTGGACAAGAGATTGACAGTTT 1012500 29 100.0 36 ............................. CTTGATGTTTCAGTATATGTACCAGATACAGCAGAG 1012435 29 100.0 35 ............................. GTTTAAGAATATAATTGTAACGGGAGCTCATAGAA 1012371 29 100.0 36 ............................. AACGGAGGGGCTCGGCATATTGCAGTCGCTAAAAAA 1012306 29 100.0 36 ............................. AGTGAAGTTAATATTGTTAAAACAGTTCGCTACTGG 1012241 29 100.0 36 ............................. TACTACAGAAGACGGTACACAAAGAATAGTGGAGGG 1012176 29 100.0 36 ............................. CGTCTCCAAATACCGGAATGGACAATGGATTTGCGA 1012111 29 100.0 36 ............................. CATAAAGAGCAAGTACATGTAGATGATCGGTGATGT 1012046 29 100.0 35 ............................. CTTCTAATAAAAATAATATTCAAATATCTCAAGTG 1011982 29 100.0 38 ............................. TTAATGTTAAGATGCAGACCTTTACGGGCAAATCTTGA 1011915 29 100.0 36 ............................. ATTATTCACGTTGATTATACAATCAACGAACGAGTT 1011850 29 100.0 36 ............................. CTTCTAATAAAAAATAATATTCAAATATCTCAAGTG 1011785 29 100.0 38 ............................. TTAATGTTAAGATGCAGACCTTTACGGGCAAATCTTGA 1011718 29 100.0 36 ............................. TATAGCGTTCAAGTTAATAATGGAAATATAATGTTA 1011653 29 100.0 36 ............................. ATTTGTATGATATGGCACAAGGTTTAAACACAGCAG 1011588 29 100.0 37 ............................. AATGGAATGTTAAGTTTGTGTGCCAGTGTTCTAGCCT 1011522 29 86.2 0 ......................GGA...T | G [1011500] ========== ====== ====== ====== ============================= ====================================== ================== 44 29 99.7 36 GTTTTAGTTCCCAATTCTGGGATTTAAAG # Left flank : TTATAAGACTTGAATTGTATAAGCTTATAAAGCATATTTTAAATGAGAAGAACTACAAAAGTCTGAGAATATGGTGGTAATAAGTGTTTGTTATTGCTGTTTATGATATTTCCACTGTAGAGTTAGAAGGACAAAAAAGATTATCAAAAATGATGAAACTATTGCGGCAATATCTTCATCATACGCAAAAATCAGTATTTGAAGGAGAAATAAGCGAATCAAAATTATTTGAGTTACAAAAAAAGTCGCAAAATATTATCAATGAAGATCAGGATTATATAGTCTTCTACAAAATTGATAATAAAAACAATGTCAAAAGGATGATGTATGGCATTGGCTCAGATCCAAATGAGACTATAATTTAAAACAGATCATACAAATATTATATTTGTAATCACAAAATGCATTACCGGAACTTCGGGAAATTTTTCGTTGATGTTTGAAAATAAAATAGGTATATGTATCTGATAAGAGATAAGAAAAATATATATAAATTATGG # Right flank : GGGGTCAGGTAAATTATGCATCACGTCACCCCATTTTTGCAGCAAGAACATTTTTCAATGTTATGTTGGCTAAGTATATGTAAAACAATACTTTTGTATAATTTTTGGGATGATACCAGTATATTTATAGATCATTCACTACTTGACATTAAACGTTGAAGTGCTAAAAAAATAAAAATAAATAATTAATTAACATGTTTTTTACGTAACAAACAAATATTTGCTGATTATTATGAAAGTAAGCTTAATTTTTAAAATGCAATGTGTATAGCTTCCATGAAAAAGGGGAAAAATAAATATTTTGGCACAATCTAAGCATAAGGAGAAAGGATGTCGTATGAAACTGCATTAAAAATTTCTGATGTTATTAATGAAATTCATAGGAAAAAATACTTGTTGCCTGCTATACAACGAGAATTTGTTTGGAGTACTTACCAGATAGAAAGACTCTTTGATAGTTTAATGAGGGACTATCCAATTGGTTCATTTTTATTTTGGAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTCCCAATTCTGGGATTTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.30,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 2 1430686-1428413 **** Predicted by CRISPRDetect 2.4 *** >NC_015672.1 Flexistipes sinusarabici DSM 4947, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1430685 36 100.0 38 .................................... TCATTTTAAAACCCTCCGGAAGGGTTGTTGCCCCTTCC 1430611 36 100.0 39 .................................... TTCTGAAATCTTATTTACAATTATTTCATTTCTCATTTT 1430536 36 100.0 36 .................................... TCATAAAGACGAATAAAGGTAAGAGTAGAACAATCT 1430464 36 100.0 37 .................................... AAAGGAGAGAAAGAATTTTTATGTAAGCTTATTGCTT 1430391 36 100.0 39 .................................... TTAACCGGCTGCTTTGCTATGTCTCTTTTCTCCCCGGGA 1430316 36 100.0 38 .................................... AAAAGAAAAATTTTTTGATTGGATAAGGCGCTTATTAT 1430242 36 100.0 36 .................................... TCCTCAAAGTATCTGAGGACTGCTTTATACCCGCCG 1430170 36 100.0 39 .................................... ACGGTTTTTATTTTTTTAAAGTACTTCTACGCGGAAGTA 1430095 36 100.0 39 .................................... ATACTCAGCGCCGTACTTTTTATATAAATCTTTTAATCT 1430020 36 100.0 38 .................................... ATTTCCGCCAGGCCATTTTGTTCCATAAAGCTTTTAAG 1429946 36 100.0 38 .................................... GCACCCGGGCTGTATCCGGGTGCCCGATGGCGGATTCG 1429872 36 100.0 37 .................................... CCTGCGCTTTGCAGACTTCTTAAATTTATTTGATTTT 1429799 36 100.0 38 .................................... TATCAATATTATTATTAATATAACATTTTGTAATATTA 1429725 36 100.0 37 .................................... TTTTACTGCGCGCTCCCAAAATTCAGATGCACTTATG 1429652 36 100.0 39 .................................... ATAGCAGCCGGAGCTTAACCGGCTGCTTTGCAACATCTA 1429577 36 100.0 39 .................................... TCCGGGTGCCCGATTGCGGATTCGAGCTCTGACCATGGA 1429502 36 100.0 39 .................................... TCCCAACTCGTCTTTAATTGTATATTTTTTTACCTTTTT 1429427 36 100.0 36 .................................... TTTATTTTTTCTTCCCCCCCTGATAAGAAAATTAAT 1429355 36 100.0 40 .................................... AGCGTGAGGCTGCAAGTCTGCAAACCTCGCGCCATATTTT 1429279 36 100.0 40 .................................... GTTCTTTGTCACAGCATTGAATAGTGTGTTGAACAATGGT 1429203 36 100.0 40 .................................... ACATAGAGTTTGTTTCCACTTGTTGTTAATACTAAATTTT 1429127 36 100.0 38 .................................... CTAGACCGCCAAAAAATAGAATTGCCATGACAATTTTC 1429053 36 100.0 40 .................................... TTCTCACAGTACAGTTCGAAGGCTACGTTATACATATCTT 1428977 36 100.0 39 .................................... GTACTGCCTTCTTCTATCTCTGGCTCACGCAGATTTTTG 1428902 36 100.0 41 .................................... TTCACTCTCCCATTTCAGGAGAGTGAAAACAGCTTTTAACT 1428825 36 100.0 37 .................................... AGCCTTATATCCGCCGTTAAAAAACTTACGGCGGCGC 1428752 36 100.0 38 .................................... AGCTGTATCTTTTTAAATAAGAAATCATTGACCCTTTT 1428678 36 100.0 38 .................................... TTAGTTTTACTTTACTTGTGTTTTCAGTTGTATTTTGC 1428604 36 100.0 38 .................................... ACAAGCTCCATGCTTACATGCCCTTTAATGAGCCTATG 1428530 36 100.0 40 .................................... TCTTCTAAAATCTGGATTTGCTTCGGGTCATTAATCTTCA 1428454 36 86.1 0 ......................CC..CA.......A | A,AG,C,CG [1428415,1428418,1428421,1428423] ========== ====== ====== ====== ==================================== ========================================= ================== 31 36 99.6 38 ATTGGAATTAATGACCTGATTTGAAGGGATTACGAC # Left flank : AAGGGGGATTTTGCGTTGGTTCAAGGTGATTTTGGTGCAACTTATTATATAGTTAATAGGTGCTTTGATATGGGATTGATTCCTGTCTATTCTACAACAAAACGTATTGCATCGGAAGAAAGTATTTCTGCAAGTGAAGTTGGAAAACAGAGTGTTTTTGAGCATGTTAATTTTAGAAGATATGTAAAATAAATATTGTTGTTTGGAAAAATAATATGGCATTCAGAGATAAGTGCAAACAAAACGAGTCGTACGTTTTGTTTTACAAAATTGCAAAATTTCGTGTGGATTTTAGAGTGAATCTAAGTTATATGAAATTACTTTATTAACAATAAGTTATGAAAAATAAAACAAAGATCCACAATAAATTTTTTGTTCAATATTATTAATAGCTTATGAATTAGGGGGGCTGATTTTGAAAAGTAGAAAAACCGGATACCCCCCCTTCCTAAAAAATGGCATTGTAACTTACTAAAACTTAAGGTATAAAAATAGGGGCT # Right flank : ACATTTGCGATGAGATATTGCGCAAATGTTTTGAAGGGATTACGACATAACAGAGTACAGCAAACAGAAGTTAGAAGACAGACGGCAGTTTTCAAAAACAGTGCTTATTTAGTTAACCCTGAAAAAGGTATATTTTCTTAAAATTTGCCAATATTTTTGTTTATTAAATGTAAACTATACATATATTTTGGCATACTTTTTATCCAGAAACACTTCGTTTGCAAAATTTGCTAATTTTTTTGCAATATTATCCATAAATTCTTTGAGAAAAAATAAAAGAAAGGCCAGTATCAGCCTTAAATTATGTCCACTTGCTGCCAAAATCGCATTAGCTTTATCTCCCTCTTTGCCTTTCAGATAATTTCTGTCCATCCGGTTATCTCGCTTAGTATGACCTATCGTCGCCTCAACACAACTTCGTCTTTTCAATAACCTCTTAAAATTAACTTTGAATTTCTTCATACTGCGTGGAACTACATGGACTTTTGCATCCCCTCTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGGAATTAATGACCTGATTTGAAGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 1710153-1709892 **** Predicted by CRISPRDetect 2.4 *** >NC_015672.1 Flexistipes sinusarabici DSM 4947, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ===================================== ================== 1710152 38 97.4 37 ....................................A. AGCTGAAGAGAGCTCCGACCATGGAATTTGGTCGGAT 1710077 38 100.0 37 ...................................... TTAATGGCTTTTTTATGGCTATTTTTGTACTGAACCA 1710002 38 100.0 35 ...................................... CTATCTCAATTCCAAAAGTTCTTGGATAGTTTATT 1709929 38 89.5 0 .........A.........T.A...............A | ========== ====== ====== ====== ====================================== ===================================== ================== 4 38 96.7 37 ATTGGAATTCATGACCTGACTTGAAGGGATTACGACTT # Left flank : GGAATCCATGACCTGATTAGAAGGGATTACGACATCAACTGTATTAAATTTAGGAAATGGAGAAATCTCTCTATTGGAATCCATGACCTGATTAGAAGGGATTACGACTCTGCTCAAAAGATAGAACTGCGCCGAGTGCTTCAACATTGGAATCCATGACCTGATTTCCAGCAAGCTCGGACCAGAAACCCAGCCGATTATATGATGGCTGGGTTTTGAAGGGATTACAACAGATCTGGCACTGTCGTGCCAGCGTTCCACGTTCAATGTTCAACGTTTTTAATGTTCACGTAGATTTCAAAGATTATTTGTTTTCAGCTTTAGTTGTTTTTTGCGTGAGACGAGATACGTTGGCGAAGCCAATTCCCTGCTCGAAAGATTTGCAACCCTGCTTTCCCTAAAACCCAAAACCTAAAACCTAAAACCTATTTTCGGAATTGACCTGATTAGAAGGGATTACGACTTTTTTTGCCATCCTAATTGCCTCAGTCCGGAAATTT # Right flank : TATCAAATACATGGACAATTTTTTTATTATCTATACCATTGGAATCCATGACCTGATTTCCAGCAAGCTCGGACCAGAAACCCAGCCGATTATATGATGGCTGGGTTTTGAAGGGATTACAACAGATCTGGCACTGTCGTGCCAGCGTTCCACGTTCAATGTTCAACGTTTTTAATGTTCACGTAGATTTCAAAGATTATTTGTTTTCAGCTTTAGTTGTTTTTTGCGTGAGACGAGATACGTTGGCGAAGCCAATTCCCTGCTCGAAAGATTTGCAACCCTGCTTTCCCTAAAACCCAAAACCTAAAACCTAAAACCTATTTTCGGAATTGACCTGATTAGAAGGGATTACGACCCCTTCCGTGGGAGCAGTTGCATAATACGCAGCACCCGAATTGGAATTAATGACCTGATTTGAAGGGATTACGACAAAAGTCTTCTAATCCATTTGTTAAGTTAAGATATACTATTGGAATTAATGACCTGATTTCCAGCAAGCT # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGGAATTCATGACCTGACTTGAAGGGATTACGACTT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.53%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 4 1710808-1710545 **** Predicted by CRISPRDetect 2.4 *** >NC_015672.1 Flexistipes sinusarabici DSM 4947, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1710807 36 100.0 39 .................................... CCTTCCGGCAACCTGCCGCCCATGAGCTGGGCGACATAT 1710732 36 100.0 41 .................................... ACCTCGACTTTGAGGTACTTAAATCTAAAACCCTCCGGAAG 1710655 36 100.0 39 .................................... ATCAACTGTATTAAATTTAGGAAATGGAGAAATCTCTCT 1710580 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 4 36 100.0 40 ATTGGAATCCATGACCTGATTAGAAGGGATTACGAC # Left flank : TCCATGACCTGATTAGAAGGGATTACGACTTTCGATATGCAAACCGACGTACCCACCCCGCATCACTATTGGAATCCATGACCTGATTAGAAGGGATTACGACAGAAGAGAAAGAATTTTTATATAATTGATTCGCTTCAGATTGGAATCCATGACCTGATTTCCAGCAAGCTCGGACCAGAAACCCAGCCGATTATATGATGGCTGGGTTTTGAAGGGATTACAACAGATCTGGCACTGTCGTGCCAGCGTTCCACGTTCAATGTTCAACGTTTTTAATGTTCACGTAGATTTCAAAGATTATTTGTTTTCAGCTTTAGTTGTTTTTTGCGTGAGACGAGATACGTTGGCGAAGCCAATTCCCTGCTCGAAAGATTTGCAACCCTGCTTTCCCTAAAACCCAAAACCTAAAACCTAAAACCTATTTTCGGAATTGACCTGATTAGAAGGGATTACGACTAGGAAAAGACAATAATCAAAGTATCTGTTTTAGTTGTGTA # Right flank : TCTGCTCAAAAGATAGAACTGCGCCGAGTGCTTCAACATTGGAATCCATGACCTGATTTCCAGCAAGCTCGGACCAGAAACCCAGCCGATTATATGATGGCTGGGTTTTGAAGGGATTACAACAGATCTGGCACTGTCGTGCCAGCGTTCCACGTTCAATGTTCAACGTTTTTAATGTTCACGTAGATTTCAAAGATTATTTGTTTTCAGCTTTAGTTGTTTTTTGCGTGAGACGAGATACGTTGGCGAAGCCAATTCCCTGCTCGAAAGATTTGCAACCCTGCTTTCCCTAAAACCCAAAACCTAAAACCTAAAACCTATTTTCGGAATTGACCTGATTAGAAGGGATTACGACTTTTTTTGCCATCCTAATTGCCTCAGTCCGGAAATTTATTGGAATTCATGACCTGACTTGAAGGGATTACGACATAGCTGAAGAGAGCTCCGACCATGGAATTTGGTCGGATATTGGAATTCATGACCTGACTTGAAGGGATTAC # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGGAATCCATGACCTGATTAGAAGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.70,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.27 Confidence: MEDIUM] # Array family : NA // Array 5 1712653-1711205 **** Predicted by CRISPRDetect 2.4 *** >NC_015672.1 Flexistipes sinusarabici DSM 4947, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1712652 36 100.0 38 .................................... TTTTGTAACCCTCCGGAAGGGTTGTGCTCCCTTCCGGC 1712578 36 100.0 41 .................................... GACGTTGATTCTATTTGGCGCTACTCCGAGCACCCGGGCGG 1712501 36 100.0 37 .................................... GCAATTGAAGCCAGGCTAGAGCTTGGACAGTTTTACC 1712428 36 100.0 38 .................................... GCCCCTTCCGGTAACCTGCCACCCATCAACTGGGCGAC 1712354 36 100.0 35 .................................... TTTCTATATTTGTCGAAATCCTTTCCACATTTGTT 1712283 36 100.0 36 .................................... TCATCCATCATCTGTAGGCTGAATGCATTTAAAAGG 1712211 36 100.0 41 .................................... CTGAATGCATTTAAAAGGTACATTTTTTCCTCCTTTTTTAT 1712134 36 100.0 38 .................................... ATTCTCGCCTATAAATCTTAGTATTTCTATCCCTCTCA 1712060 36 100.0 38 .................................... TAAGAGAAAGAATTTTTACTTAAATGATACGCTTCTGT 1711986 36 100.0 36 .................................... CATCTGCAAGCTGAACGCATTCAATAGATACATTTT 1711914 36 100.0 40 .................................... TCATAATCAGGAAGGATGGACATTAGTTTCATCCATAATT 1711838 36 100.0 40 .................................... ACCTAATCTTTCAGCAGTGTTTATTGCATGCTTAGTTCCT 1711762 36 100.0 40 .................................... GTCTGTCATCGACCCTTAAGATCATACCGTTTGTGGTTTT 1711686 36 100.0 38 .................................... GATAATTGTCTTGTCTCATCGTAATATACTCTTACATC 1711612 36 100.0 38 .................................... AACGTGTTCCAGATTCACATATCCTTTTATAAGTTTGT 1711538 36 91.7 39 ........T..........C.T.............. TTTAGAGAGAGAATTTTTATATAATGAAATTGCTTCTGT 1711463 36 91.7 39 ........T..........C.T.............. AAACCCTCCGGAAGGGTTGTTGCCCCTTCCGGCAACCTG 1711388 36 97.2 38 ........T........................... GAGCTGCCATTTCAAACAGCGCTTTCTGTTCTTGATGT 1711314 36 100.0 38 .................................... TTTCGATATGCAAACCGACGTACCCACCCCGCATCACT 1711240 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 20 36 99.0 38 ATTGGAATCCATGACCTGATTAGAAGGGATTACGAC # Left flank : AAGGGGGATTTTGCGTTGGTTCAAGGTGATTTTGGTGCAACTTATTATATAGTTAATAGGTGCTTTGATATGGGATTGATTCCTGTCTATTCTACAACAAAACGTATTGCATCCGAAGAGAGTATATCTGCAAGTGAAGTTGGAAAACAGAGTGTTTTTGAGCATGTTAATTTTAGAAGATATGTAAAATAAATATTGTTGTTTGGAAAAATAATAGGGCATTTAGAGATAAGTGCAAAACAAAACGAGTCGTAAGTTTTGTTTTGTAAATTTGCAAAATTTCGTGTGGATTTTAGAGTGAATCTAAGTTATATGAAATTACTTTATTAACAATAAGTTATGAAAAATAAAACAAAGATCCACAATAAATTTTTTGTTCAATATTATTAATAGCTTATGAATTAGGGGGGCTGATTTTGAAAAGTAGAAAAACCGGATACCCCCCTTCCTAAAAAATGGCATTGTAACTTACTAAAACTTAAGGTATAAAAATAGGGACT # Right flank : AGAAGAGAAAGAATTTTTATATAATTGATTCGCTTCAGATTGGAATCCATGACCTGATTTCCAGCAAGCTCGGACCAGAAACCCAGCCGATTATATGATGGCTGGGTTTTGAAGGGATTACAACAGATCTGGCACTGTCGTGCCAGCGTTCCACGTTCAATGTTCAACGTTTTTAATGTTCACGTAGATTTCAAAGATTATTTGTTTTCAGCTTTAGTTGTTTTTTGCGTGAGACGAGATACGTTGGCGAAGCCAATTCCCTGCTCGAAAGATTTGCAACCCTGCTTTCCCTAAAACCCAAAACCTAAAACCTAAAACCTATTTTCGGAATTGACCTGATTAGAAGGGATTACGACTAGGAAAAGACAATAATCAAAGTATCTGTTTTAGTTGTGTAATTGGAATCCATGACCTGATTAGAAGGGATTACGACCCTTCCGGCAACCTGCCGCCCATGAGCTGGGCGACATATATTGGAATCCATGACCTGATTAGAAGGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGGAATCCATGACCTGATTAGAAGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.70,-2.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 6 1735757-1734297 **** Predicted by CRISPRDetect 2.4 *** >NC_015672.1 Flexistipes sinusarabici DSM 4947, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 1735756 36 100.0 40 .................................... TTTTTTCAAGTCCTCGGGGATATCCCACGAGGACGAAGAT 1735680 36 88.9 39 ...............................G.CGT CATTTGATTCTGGTACACGTTTCACTACGTGTTCGACGG 1735605 36 100.0 39 .................................... CCTATTTTTCTTTTCTTGGTGTCACTCTCCCATTTCAGG 1735530 36 100.0 40 .................................... ATGGAGCTTTAACCATCTCGAATTGCGGGCTTCTCCCCTA 1735454 36 100.0 39 .................................... AGGTCGTGCTGGTTGAAATGCCAGCACAACACATAACCG 1735379 36 100.0 40 .................................... ATATCCGATATTTCTTGATAACATTTCAGCATGTTCAAAT 1735303 36 100.0 39 .................................... TTATTATTTTTAAAAGCTCTTTTTTGTTGAGCTTATCGT 1735228 36 100.0 38 .................................... ATGTTATATACATGAAGAATGTTATCCTCATCTATACC 1735154 36 100.0 39 .................................... TCGTCAATCTTGACAGATGCCGGGAACTCACCCAGCATC 1735079 36 100.0 39 .................................... TACATACAACCTCACTGGAGCGTGAGGTTGCAATTCTGC 1735004 36 100.0 39 .................................... TTTTGATACCGGAAAACTGTCTATTTTTTGCCCATGTAT 1734929 36 100.0 39 .................................... TTTCAGGGAGACATTTATTCGGTTATGTTCAACCCCGAG 1734854 36 100.0 39 .................................... TTTCTTCTTTTTCCTTCTTCGCTTTTATCTCCTCCAATA 1734779 36 100.0 38 .................................... TAAAAACATTTTTTTCCTCCTTTTTTATTTCTTGATTA 1734705 36 100.0 39 .................................... TTTTGTAAATGATATGCTTCAGTCCGGAATTCTCTCCCG 1734630 36 100.0 38 .................................... TTATCTATACCTCTGACTTTTACATCGTCAGGGGTATA 1734556 36 100.0 40 .................................... TCTAGTTCTTTTATTTGTTCCATGTTATTCATTTTTTTTT 1734480 36 100.0 39 .................................... CTTGAGGAGTTCCTCTATTTTCTTTGGGATTCTTTTTAA 1734405 36 100.0 36 .................................... TCAAACCCGGAAGGACAGGTATCTATATATTTCCCA 1734333 35 83.3 0 ......................CC..CA.G.-.... | G,C [1734299,1734304] ========== ====== ====== ====== ==================================== ======================================== ================== 20 36 98.6 39 ATTGGAATTCATGACCTGACTTGAAGGGATTACGAC # Left flank : TTGACTATGTGTTTTTTGAAATATAAAATTAAGTAAAGAATTCAAGTATCTTACTTACACTGTTTTCACGTCTTTGTTCGCCCTGTTATATCAGTTTCGCTGATTGCCAGTGGCATTTAACAGGGCAGGGAGTGAAAACGACGAAGCAATCTCAAAACGAAGTGCGAAACTTGATAAAGAGATTAAAATTTCCGATGTTGTTTGGCAAGTATATAGGGTTCAGAAGGGATGAGTACAAAACAAAACGAGTCGTACGTTTTGTTTTGTAAATTTGCAAAATTTCGTGTGGATTTTAGAGTAAATCTAAGTTGGGGGAATTTTCATTACTAACAATAAGTTATGGAAAATAAAACAAAAATCCACAACAAATTTTTTGTTCAATATTATTAATAGTTTACAAAACAGGGGGTCTGATTTTGAAAAGTAGGAAAATCAGATACCCCCCTTCCTAAAAAATGGCATTGTAACTTACTAAAACTTAAGGTATAAAAATAGGGGCT # Right flank : CAGAAACCCAGCCGATTATATGATGGCTGGGTTTTGAAGGGATTACAACAGATCTGGCACTGTCGTGCCAGCGTTCCACGTTCAATGTTTTGAATGCCCACGTGAATTTCGGAGATTATGAAAGCTTTGAATAATTTAGGAGGCGCGGCTTCAGCCGTGCAAAGTTTATTCCGAAACCCAGTATTATCAAGCATGCGGGACTACCAGGGCACTTAATAATTAAGTGCCCTGGCCTAAAACGGAGAAAAAGACATTATTCAAAGCTTTCTATTAATCGTATGCCCGGGTGTTTCCTCTCAAATACCATATGATTACATATGTGTAATAGTAAATCAAAAAGCCATTTTAAGGTTTCTTGACAAATCACTGTCAGCTACCTTTTTGTAAGTGCTTTGACTTTTAACATAATTGTATACGGCAATTTTCTTATAATCCCCATAAGCCATCCCAAAACCAAAAGCTACAGGTACCGGTATACTCATAAAAAAATGATACTTTCT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGGAATTCATGACCTGACTTGAAGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //