Array 1 494-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNEJ01000034.1 Pseudoalteromonas piscicida strain S1947 S1947_S21_L001_R1_001__paired__contig_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 493 35 100.0 35 ................................... AAGAACATAAAAGTAGAATAGTTATAAGTTTAAAT 423 35 100.0 38 ................................... ACTATTTCACTTCTTTGCGGGCGTAGGCGGTCATACTA 350 35 100.0 34 ................................... ATATGTATTTAACGATTGAAGAATGGTCATGATT 281 35 100.0 35 ................................... CTTTTGAGTTTGATTTAATAAGCATTTTTGTTCTC 211 35 100.0 34 ................................... CCTTTTGTCCATATACTTGCATCATCATTGCTGG 142 35 100.0 36 ................................... AATTTCGATTACGTTTCCGATATCGATAAACGAAAT 71 35 97.1 0 ................A.................. | ========== ====== ====== ====== =================================== ====================================== ================== 7 35 99.6 36 GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAAC # Left flank : CGACTGCTTTGAGTGTGGTTGTCGTTGAAGCAGTAGAAACGAATTTGTTTTTTCTAGGAGACCATTTATCTTTAAGTTGCAGTAACATTTGCCGTAGAGGCAGCTAAATCACAAAAGATCGCGGGGTGAACCCGCTCCTACTCGGTATGAGTAAACACCATATTAAAAATCTTGTACCTTTTATTTTAGGGTGCGTTCTTATCACTTTTTTTGAGGGTTTTATTCTAAGAAACAACGGGTTATAAGAAAAAGTTGCTACCGTTCTGGATTAACCTATTTCCTAATTTAGGGATTTTTTAAAAATACTATAAATATCATACTGTTAGCTTAAAAATACGCCATTTGGTTCATCCAGTTCAATTAAATCAATAAGTTAGCCTAACTTTTCACTTCCAAAATGGCTGTTTTTTGCTAAAATCAACACTGTTTCTTGATTGGCGCTGGAGGTTCATCCAATTAGCCGCTATAGGCCACGCCAGTCAAGGGCTACAGAAGGTAGG # Right flank : CATCTTGGTTAATATTAGGATGTGTGTTTGATTTGTT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 13288-13041 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNEJ01000034.1 Pseudoalteromonas piscicida strain S1947 S1947_S21_L001_R1_001__paired__contig_34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================= ================== 13287 37 100.0 33 ..................................... ATTATTCCAACCCAAAGATAGGGTTTGTCCTTT 13217 37 100.0 33 ..................................... TCTTGCGCAAGAGTTGCGCAAAATAAAAATAAA 13147 37 100.0 33 ..................................... ATGGGTTGCGAAGTTAGCTGCCATACTTTCTCG 13077 37 94.6 0 ...................................TT | ========== ====== ====== ====== ===================================== ================================= ================== 4 37 98.7 33 GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAACCC # Left flank : AGATTTAGCAAAAAATGAGATCTACCAAATAAATTTGTGAAGCTTGTCATTTGTAGGTCGTGATTTATCACGACACAGAATTTCCGCCGCTTAAGGTGCGATATAAAAACCAAAAAGATCGCGGGGTGAACCCACTTTTACTCGCTATAAGTAAACGCCATTTCAATAATCTTGTACCTTTTATTTTAGGGTGCGTTTTTAACACTTTTTTTGAGGAACTTATACAAAGAAACAAAGGGTTATAAGCAAAAGTTGCTACTGTTCTGGATGAACCTATTCCCTAATTTAGGGATTTTTTAAAAATACTATAAATATCATACTGTTAGCTTAAAAAGCCGCCTTTAGGTTCATCCAGTTCAATTAAATCAATAAGTTAGCCTAACTTTTTACTTTCAAAATGGCTGTTTTTTGCTAAAATCAACGCAGTTTCTTGATTAACGCTGGAGGTTCATCCAATTAGCCGCTACAGGCCACGCCAGTCAAGGGCTACAGAAGGTAGG # Right flank : TGGTTTTGTGTTTTTGCTAATCATTTTTTGGTTGCAGCAACAAAAGATCGCGGGGTTCACCCGCTTCTACTCGATAGGGGCTAAGCGCTGGGGGTGAGTTGACTACCAAACCATAAAACGAATCGCAATGAGGACATACACTGCCCTCTATTATTCATATTCACACCCTTCCAACGCTAACAGTCTAAAAAGTTAAAACACGACAAAAGATAACAAAAAAAACAATTTGGCAACAAAGCATTCCAAACAAACACAAATTACTTTATGCTGATTGTTAAGGATAGATTCATCACACAAGGACACCTATGTTTGTTGCACAAATCGAATTTAAGCGAATTCAAACTTTTTTGTTTTCTTCCTCTCGTCTGCACGATATGGTTGCCGCCAATGCTTTACTTGCTAAGACTATTCGCTACGATCTGGTTGTCGCCGCCATAGCAATAGAAAAAGCCATACTCCCAGACAAAACGCTCCTGTGCGGCAACGACTCAGACGCACTC # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAACCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 72558-72873 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNEJ01000005.1 Pseudoalteromonas piscicida strain S1947 S1947_S21_L001_R1_001__paired__contig_5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================ ================== 72558 29 100.0 44 ............................. ACTGAGTATGTCACAAAAGAATTACCTGAAAGCACATAGTTTCT 72631 29 100.0 43 ............................. AAACAAATCAAAAACACATCCTAAAATACACCAAGATGTTTCT 72703 29 100.0 42 ............................. CTTTCGTTTAACGATAGCGGAAACGTAATCGCAATTGTTTCT 72774 29 100.0 42 ............................. TGAATTCTAATCAAGAGTTACTTTGTATGAGTCATAGTTTCT 72845 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ============================================ ================== 5 29 100.0 43 ACTGCCTCTACGGCAAATGTTGCTGCAAC # Left flank : GCTGGTTGACTACCAACGACTAATCGTTGTAGTTGTTGACAGAGGCGCAGGGATGGAAGAAGAAAAGCTAGCAAACGCAGTACTGCCATTCTTTTCTACTAAACCCAGTGGCACAGGCATAGGACTTAGTATTTGTAATGAAGTTGCCATTGCCCACGGTGGACAACTTAAGCTATTTAATCGCGAAAAGGGCGGACTAATGGTGCAGTTTGATCTGCCTCTCGTTGCACCTAAAGCATAGCGTTGTTATTGCACTAACCCATATCGGGTAGGAGCGGGTTCACCCAGCGATCTTTGGGTTTTAATGCAATACATTGTGCGGTGGAAATCTTTTTGTCGTGATAAATCACGACCTACAAATAACGAGCTTCATAGGTTTATCCTGTAGGTCTTGCTTTTTTGTTAATCTAGGGTGCTCACGAGGGCTTTTTAACGCTGTGTAACGTCTTAAACACCAATCATCATTTCTAGGTAGCGATAAACAATGCACCTAACCTCAC # Right flank : CCCTACCTTCTGTAGCCCTTGATTGGCGTGGCCTGTAGCGGCTAATTGGATGAACCTCCAGCGCCAATCAAGAAACTGTGTTGATTTTAGCAAAAAACAGCCATTTTGAAAGTAAAAAGTTAGGCTAACTTATTGATTTAATTGAACTGGATGAACCTAAAGGCGGCTTTTAAAGCTAACGGCATGATATTTATAGTATTTTTAAAAAATCCCTAAATTAGGGAATAGGTTCATCCAGAACCGTATTACCTTTTATTTTTTAAATTATTGTTTTATTTGCAAAATACGTACAAATATAAGACTTAAAACAAGCGAGGTTTTTTTGAGTCATTGGCTTTTGTGAATATCACTTTACCTTCTTCAAGAACTTACCTATTCTGCTAACTCAATTAACATGATGCAAGGAGCCAGTACTCGATGGAGTTAAATCAAGAAGCAATCACCAGCTATCTTAACGAGCTGCTATCAGACTCACATTCAGACTTACTCAAAAGTGCAAC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGCCTCTACGGCAAATGTTGCTGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.70,-1.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [61.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 75776-75382 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNEJ01000005.1 Pseudoalteromonas piscicida strain S1947 S1947_S21_L001_R1_001__paired__contig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 75775 35 100.0 36 ................................... TCATATTAAATATCCTGTAGTTGGAAACTTCATTAG 75704 35 100.0 35 ................................... CCATACTGATTAAAACGCATGAACTAAATTGTTTA 75634 35 100.0 43 ................................... ACTAATCCGCCTTTGTGATATTCAAACGTTGCCTTGTGGAAAA 75556 35 97.1 35 ........G.......................... ACAACATCGGCATTGTATGCGTCTTGTGCGTACAA 75486 35 100.0 35 ................................... AGATTTTGCTCTGCTTTTGCTAAGAGAGATATTTT 75416 34 94.3 0 ..............................-..T. | C [75389] ========== ====== ====== ====== =================================== =========================================== ================== 6 35 98.6 37 GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAAC # Left flank : GTAGAGGCAGTAGAAACAGATCAATGGCATAACGCTGGATCAACTTTTCTT # Right flank : AACAAGATCGCGGGATGAACCCGCTCCTACTCGATTAATATGATTGGAGCGGTTTTAACTAAGCGAAAGGAAGTTGCTAGCGGTGGCTAGCAACGTGTGATTAGACCGAGACTGGCTAAAACCACATTTTATGTCCCCAACCAAATATACAAATAATCCCAAATATCAGTAAAATAAGTGACAAGCGACTGCCCTTAGGTTGGCTTTGTGTTTGGTGTGTGACACTGGCTTTTCGCGCAATTTGTTTGTAAGCACTAAGATTTGAATAATAAACAAAAGCAGAGGTCGTGAGCATCACCAAACCAATAAATACCGCATGCCAATCACTCGAGAAAAACCGAATTGGCTCACCATAATATAGCGTGGTCATTTCTACAAAGTTAGTGCCAAACACGCTGGCAATAAAAATAAGTGCGGTGCCTAACGTGGCGATGTTTTTTATCTTATTTTGATGCTGCTGTTGTTGCTCCCGTAGCTGCTTGGCTTCTTGTTCCATTTTA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCAGCAACATTTGCCGTAGAGGCAGTAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //