Array 1 121208-122027 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RXMH01000004.1 Klebsiella pneumoniae strain 18056 18056-contig_4, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence              	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	=============================	================================	==================
    121208	    29	  93.1	    32	............TG...............	AAAAGACAAGCCAGTTTTATTGTCGCTCTTCT	
    121269	    29	  93.1	    32	............TG...............	AGCAACGTTTCCGGATTATATGGCTGGAACGT	
    121330	    29	  93.1	    32	............TG...............	TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA	
    121391	    29	 100.0	    32	.............................	GCACCCTCACGGATACCTTTTGCACAGTGTTA	
    121452	    29	  96.6	    32	............................C	CTTAGAGAAGCAAAAACCCCACCGAGGCAGGG	
    121513	    29	  93.1	    32	............TG...............	TTACTTTTTGGCAGTTGGTAAAACACTTTTGC	
    121574	    29	 100.0	    32	.............................	CGAAAACGGCAACCTTCATAAAAACGTCTTTT	
    121635	    29	  93.1	    32	............TG...............	CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG	
    121696	    29	 100.0	    32	.............................	CAGCGTCTGAACGGACGAAACATCCCTGTTGA	
    121757	    28	  89.7	    32	.....-......TC...............	CGAGCGCTCTCCTGGTAAATCGGTAGCTCGGA	
    121817	    29	 100.0	    32	.............................	GCTGGATTTCCGTCAGTTGGTCAGCTGCTGCT	
    121878	    29	  89.7	    32	............TGA..............	TTCCGGACTCCTGTTTCCGGCAGTGGATTAAA	
    121939	    29	 100.0	    32	.............................	CACTACCAGATCCGAATGGACACCCGTAATGA	
    122000	    28	  93.1	     0	......................-.....A	|                               	
==========	======	======	======	=============================	================================	==================
        14	    29	  95.3	    32	GTATTCCCCCCGCATGCGGGGGTTATCGG	                                	       

# Left flank :   GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA
# Right flank :  ACATAAAAACCGCAATGGTGGGGCTTTTGTTATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCTTCAGGATAACCCACATTCTGTCAAATCTTGCAGGTTGCAATCAGCAAAGGCCTTACGTCGATAAATTCATGCCTTGAGCTGGTAAGGAAGTATGACGTTATAACTCTGCATTTCTGGTTGATTAAGGTAGGGCGGCATTCCTGCTTTAAAAACAATCAATAATTTTGAACGGTAGTCGTCTTGATCCCAACTGCTACCTGATGGACTAGGCACCTGCAAAGATCCAATTTATACTGGTTATATATACAGTGTTTTTAAGTGATCGGAGGTTGTGCCTATGTTCTTAATTCCAATGGAAAATCCTGAGAAAATCGCCATCCCTTTATTTCTCGAGCGGTGTGCAGCTGGCTTCCCCAGCCCTGCCCAGGATTATACTTCCAGTGAGCTAGACCTGAACGATTATTGCATCAGGCATC

# Questionable array : NO	 Score: 5.58
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTATTCCCCCCGCATGCGGGGGTTATCGG
# Alternate repeat :   GTATTCCCCCCGTGTGCGGGGGTTATCGG

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     R [3,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  R [-12.10,-12.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-8] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [70.0-55.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.18,0.74   Confidence: HIGH] 

# Array family : I-E [Matched known repeat from this family],   
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