Array 1 1673-1281 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPV010000014.1 Gilliamella sp. B14384G15 NODE_14_length_87120_cov_205.391073, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 1672 26 100.0 35 .......................... CCGAAAAATAAAGATTTGGAATCAATAATGTGGGA 1611 26 100.0 35 .......................... CCGGGTTGAGTTCAATCGTGGATTCATCCGTTATT 1550 26 100.0 35 .......................... CCGTCATCTAAGAAAAATCAACTACTCGCTGAAGC 1489 26 100.0 35 .......................... CCGAAAAAAATGTATCATCAATTAATGATTGTTCT 1428 26 100.0 35 .......................... CCTGAGAATATTCCCAAAACGCTCACGATTAATGC 1367 26 100.0 35 .......................... CCGGTTATTTCACCATTTTTTACTCTATCAATTGG 1306 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =================================== ================== 7 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : ATATAGGTGAATTTAATGAAAACAAAGAATTTGTAACCAAAAGAGGAAAAGTTTATAAAAAAGTTGAATAATTTTAAAGTGTTAAAAATATAAATTGTTTATTTAAAGTTTAAATTAGTAGGATTGATTATATATGTCAGCTTTGTGTTTTCCCTGTATATACAGGGATAAACCGCTGGTCGATCTGTTGGTGCTGTTTTTGAGATTATGTTCCCTGTACACACAGGGATAAATCTTTGATGCGTCAATATTACATAGCTTTTTTTGCTATTCAAATAATCGCAATTCTATATTTCATTGTTTACCATTTATTTAATAGCATGAAAAATATAAATTTATTGATGGAATTCCGTAGAATCTAATTTCAATTCCCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATACAGATTTTGGTAAAAAATAGCCTAAAAAATCGGTAGAAATTTGGTGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGA # Right flank : CCGAAATTGCATCGATTAATAACTTTTTTAATGGAAATTACTATCTGTTCTTAGTGATACGTTTTGTTATTTATGCATTTTTTATTTGTCTCCTTATTAAATTTAAAATAACCATAAAAACTAAAGTCAACTCACAACTGTTTTTTAGAACTAGCAAATTGTGTTTTTTCTTAATTTGTTTTAATGAAATAATGTTGTTTATTCGGATGGAGTAAAAAATGTCTGCTATGAGTTTCTTTGACTATGTGATATTGTCACTTGGATGGTCTATCAATAATGGACTATGGAACATTATATCTATGTCTGGCATTTTTGTTTTGCCCTAAATATTTAAAATGATTAGCATCATTATTGATGTTAGAGACAAAGGGGCGCTTAAAGGAGAACATGCAAATATTATTGTTACTCGATTAGAACAATATATTTATATAAGTATTGTCGTAATCTTTTTTGTGTATTATCCATCAATTAGTCTTGATATTAGAGTGCTACATTATGAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 117416-117628 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPV010000001.1 Gilliamella sp. B14384G15 NODE_1_length_406051_cov_227.258610, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 117416 29 100.0 32 ............................. GCAACATTTGTTTTTTTAAAAACTTTGATATC 117477 29 100.0 33 ............................. CGTTTAATGTACATTGAAAACACACGCGCCTGC 117539 29 100.0 32 ............................. TGTTCATAAACACCGTACCCGATACCGGTTAT 117600 29 86.2 0 ............T.............ATA | ========== ====== ====== ====== ============================= ================================= ================== 4 29 96.5 33 ATGTTCCCTGTACACACAGGGATAAACCG # Left flank : GATGCGCTAACATCAACTTTATAGCATTAATTATGCCAATAATAAAAATACTCGTTAAATCAAAACAATTTGCTCAAAAAACAAACCAAAAAGTTGGTAAAATTTTAATGTACTTACTTTTAATTATAAAACAAAAAGTTATAATTAGAGTGTTCCCTGTATATACAGGGATAAATCTAACTCGAGAAAAATACATTTATTCACTCCCTTGTGTTCCCTGTATGCACAGGGATAAATCGGCGGGCGTTAATATTACATAGCATTTTTTGCTATTCAAAAATCGCAATTCTATATTTTATTGTTAACCATTTTTTAACTGCATGAAAAATATAAATTTATCGGTAGAATCCCGTAGAACCTAATTTTAATTTCCATTAGTTTTAATTAATCAAATAAAAACATAGTGTTATATATTCTGATTTTAATGAAAAATATCCCAAAAAATCGGTAGAAATTTGACGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : AAAAATATTACAAATCGCCCTAGTGGCGGTTTTTCATTGCCAAAATCCTTTAAATAACATACCATTGCAAAAAAATATAAAGATCAAGGAGATGGTGTGAAAAAAATAATTTTAGTAGGCTTGATTGGGTTGATTTCATCGGGCTGTGGTGAAAAGAAAGTCACTGAGGAGATGCTTGCAGGAGATTGGGAGTGTACAAATACCGAGCAAACGGCAAGATGGGAAAATGGAACTTTTCAAGATTTTGGAAAGGTCATAAGTGAAAAAGTCCTAATTACATATAAAAACTATGATGGAGTGTTGATGAAAGGGAGTGGTGATGACATTGCCAAGGGTATCTGGGGTTCAGTATCGTCAACTGTTGCTATGCAAGATGAAAAAATTTTAAGCATATCAGAGTCTTTTAGACAATATATATCTAATAAGTTTGAATATATTTCAGATAAAGAATATAAATACACTCAGTTTATTGAGAATGTTTTTAAAGGTTATTCAGAGGA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTACACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4198-4531 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPV010000020.1 Gilliamella sp. B14384G15 NODE_20_length_31554_cov_201.958340, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4198 29 100.0 32 ............................. GTTTTAATGTACAGGATATGTTTGAATTGTTA 4259 29 100.0 32 ............................. GCGTGATACCAAAACTAAAAATAATAAATTTA 4320 29 100.0 32 ............................. ATGAAAACTCGGCCGTTCGCAGAGCGATTGGA 4381 29 100.0 32 ............................. CCTGTTAATCCAATGCCAAATAGCTCATCAAT 4442 29 100.0 32 ............................. CAATGGTCTACCCAATACATCAATGAAGATGG 4503 29 79.3 0 A...........TG........C...T.A | ========== ====== ====== ====== ============================= ================================ ================== 6 29 96.5 32 GTGTTCCCTGTACACACAGGGATAAACCG # Left flank : ATTATATGAACTAAAAAACATAACTTGAATCTAACCTATGAAAATTTTGTAACCGAGCAAAATAAGAAATCAACTCCAAAAAAAGAGTCATTTTGATAACAACAAAACATTAAAAACATTTCAATAAAATCATGCAAAAAACAGTAAAAAAGTTGGTAGAAATTTATACTTAATTATTTTAATTAATAAATAATAAGTTATGATAAGTGTTCCTTGTACACACAAGGATAAACAGGCTATGCATCAAAGTTACATAGTATTTTTTAGCTATTCAAATAATCGCAATTCTATATTTCATTGTTTATCATTTATTTAATTGCATGAAAAATATAAATTTATTGGTAGAATTCCGTAGAATCTAATTTTAATTTCCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATGCTGATTTTGATAAAAAATAGCCTAAAAAATCGGTAGAAATTTGGTGTTCATTATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : ATATTAGATTAGAAGTTGTTAACTTTCTAAGGATAGAATGGTTTCTAAGTATTATTTATATGACACATATTTGACTGATTAATGAGTTTTTTTAAGGATTGGCATGGTAAAAGTATAAAGTAAATGAATTTTCACTTATTAATATGAAGAAGCAATTAACCTCATAAATACCTAATTATTTCACTGATAATGCTAAATAGCGCTTACAGAATTTGTTTTGTTTATAACTGAATATTACGATCCCTTTCCATAAAATAGTCTAGAAAAAGCTTTCTTTTCAAAAGGAATTAATAATTTATTCACTTAACTTCTTCGGCGGTTTTTTATTGCCCAAATCATCTAAATAAAATACTATTACCCAAAATGAAATTTAAAATATTAAAAAATTTAATTATTTTATCATCTGTTATTATTCAATGATAAATGGAAGTAAGGAATGAAAAAATTAATTGCTATTTCAATATTAACTTTGATCGGTTTCAACGTATTTGCTAATGATA # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTACACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 6133-6402 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPV010000020.1 Gilliamella sp. B14384G15 NODE_20_length_31554_cov_201.958340, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 6133 26 100.0 35 .......................... CCGAATAACTGGAGTATATTTTTAGAGGTTCACCG 6194 26 100.0 35 .......................... CCGCGTTACATGAAAAATACCCGATGAAACCAATT 6255 26 100.0 35 .......................... CCGCCGGGACAACATTTGCATTTGACCTGACTGAT 6316 26 100.0 35 .......................... CCGGGTATATTTTAGGTGGTCGAATTGAGTTTTTA 6377 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== =================================== ================== 5 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GAAGAATACATAGAATTTACAATGCCTAATCCATAAAAAAGGCCTGAAACGATCCAATTTTAAACAGACTAATTTCTACGTTAGATTAGTCTAGAAAAGTATTTCTTATACATATAGATAAAACAGCTTTATTTGTAAATTAACCTAATTTAGGTTATTGGCATATGCATTAATTTATCCGTTATCTATAATAATATGCGGTTTTTTGTGTTCCCTGTGTGGACAGGGATAAACCGGCGATGCGTCAATATTACATAGCATTTTTTGGCTATTCAAAAAATCGCAATTTTATATTTCATTGTTTACCATTTTTTAATTATATGAAAAATAATAACTTATCGGTAGAATCCCGTAGAATCGAATTTTAATTTCCATTAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATAAAGATTTTGATAAAAAATAGCCTAAAAAATCGGTAGAAATTTGGTGGTCAATATTTTAATTATAAAACAGTATGTTATAATTAGG # Right flank : ATCATATTAAATTAGAAGTTATTATCTTTATAAGAATGGATTTTAGATATTATTTATACGATATAGTGTTGATTGATAATAGTTTGTTTAAAGTATTATGTGATAAAATTATAATATAAATGAATTTTCAATTATCAGTATGGAGAAGCAACTAAACTCATAAATACCTAGTTATTTTACTGATTATGCTCAATAGTGCTTACAAAAATTGTTTAGTACATGAATATCATCCTAACTTTCAATAAATTAATTTAGGAAAATCTTTTTTTAAAAGTGGATAATAATTAATTCACCTAACTGTTTCGGCGTTTTTTTATTGCTCAACTCATATGAATAAAATACTATTATCAAAAATAAGATCTAATGTGTAAAAGAATTTAATTATTTTATCATCTGTTATTATTCAATAATAAATGGAAGTAAAGAATGAAAAATTTAATTGCTATTTCAATATTAACTTTGATCGGTTTCAACTCTTTTGCTAATGAGAATGCAAAAAA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-85.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 8044-8679 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPV010000020.1 Gilliamella sp. B14384G15 NODE_20_length_31554_cov_201.958340, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 8044 26 100.0 35 .......................... CCAGTAAACTAGCTGCTAATGCGGCAGGTGTAGGA 8105 26 100.0 35 .......................... CCGTAATCGATTGTGTGCGTTGTTTCGTCGTCACT 8166 26 100.0 35 .......................... CCGCGGGCGTTTGGTGCTGAATATTACGTTTTGAA 8227 26 100.0 35 .......................... CCGTGCGTCACAACTCGGATTAACGGAATTGAGTT 8288 26 100.0 35 .......................... CCGTAACTAATGAGTTTTTGGTCGGCAAGTGGGAC 8349 26 100.0 35 .......................... CCGGTTTTTTAATGCCTGCAATATAAATTTAGTTA 8410 26 100.0 35 .......................... CCGGTCAAATGAGTCAAGAAGAACTAACTGAATTA 8471 26 100.0 35 .......................... CCGTTCAGACTAGTATTGGTGTAATCAATAAAGCC 8532 26 100.0 35 .......................... CCGTGCATTTGCCTCTTACGGGCCTTTCGGCAGAC 8593 26 100.0 35 .......................... CCGTAATGGAATTGATTCTGTACTAATCCTATCCT 8654 26 76.9 0 C..........T..T........TCT | ========== ====== ====== ====== ========================== =================================== ================== 11 26 97.9 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : CAAAAAGACTAATTTCTAGGTTAGATTAGTCTAGAAAAGTATTTCTTATACATATAGATAAAACAGCTTTATTTGTAAATTAACCTAATCAAGGTTATTGGCATATGCATTAATTTATCACTTATCTATAATAATATACGGTTTTTGTATTCCCTGTATTCACAGGGATAAACCGCGCCATGTTATTCCCCCATCGTCACATGTCTGATGTTCCCTACACACAGGGATAAATCGAGGGATGCGTCAATATTACATAGCATTTTTTTGCTATTCAAATAATCGCAATTCTATATTTCATTGTTTATCATTTATTTAATTGCATGAAAAATATGAATTTATTGGTAGAATTCCGTAGAATCGAATTTTAATTTCCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATACAGATTTTGATAAAAAATAGCCAAAAAAATCGGTAGAAATTTGGTGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGA # Right flank : TTTATTAAGAAAGTTCTGGAAAGTCAATCTTCATACCCCATGCCTACTCAGGGGGAATTTTTATTCTGCAAACTTATTTTTGTGATCATATCGATTGTAATGGATAGCATCACTTATTAAGTAGTTGTAAATTTCATCTACAATTTCTATCCCATATTTTAAGTAATCCGCTTCACGTTTTTTGCCTCGTTCACCAGGAAAAAAGACTTCACTATTTCCTTTGGCGGGTTTAACGTGTTTTAGTTGATCCAGCATGGCTGACATGTTCTTTTTGAACGTTTCAAGACCGATAAAATAATCAGGATTGATAACAATATGCAAATGTCCAAGATCGCGTCCTTTAGACAAGTCGGCATACATGGATGAGACGTTTTTGCCAAATGGTACACCTAATAAAATGCCTGACAACACATCCACCATCATCATTAGCCCATAACCTTTGGCATCCGCTATTGGTAATAGAGCGTTGACTTTGTGTGGATCGGTTGTTGGTTCACCTT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 80367-80578 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPV010000011.1 Gilliamella sp. B14384G15 NODE_11_length_117623_cov_202.275758, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 80367 29 100.0 32 ............................. TTCATCTACAACTCGACAGGAAATACATGGAG 80428 29 100.0 32 ............................. TTCATGAACATCACCGATCAAATCGATGTCGT 80489 29 100.0 32 ............................. TCGGAATCTCTAGGAGACGCTGTTGCTCCATT 80550 29 86.2 0 .T..........CA............T.. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 96.5 32 GAGTTCCCTGTATGCACAGGGATAAACCG # Left flank : AAATGCTAAGATTTATGGTGGGGTTTATAACTTATTTGACAAAGATGTTTCAAACGCTGACTTTGGTAAAACTCTAGAAGGCCGACGCTACTTTGTAGGTACTGAGATTAACTTCTAAATAAATTGAACTAATAAATATTTTTCTGTGAAAAAAGATGGCTGTTAAAACAGCCATCTTTTATTTATAGTAATCTAACTATTTACACCCTAAATATAAAAGTCACTTGTTGAACCTGCCATAACGTAACCTAGTGCAATATCACATAGCATTTTTTTATTATTCAAAAAAATCACTATTCTATATTTTATTGTTTTCTATTTTTTAATTACATGAAAAATATAAACTTATTGGTAGGATCTAATATTAATCACCATTAATTTTAATTAATCAAATAAAAACATATTGTTATAGATTGTAATTTTAATAAAAAATAACCTAAAAAATCGGTAGAAATTTGACGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGG # Right flank : GGCGGGGCGTCAATATTACATAGCATTTTTTGCTATTCAAAAAAATCACAATTCTACATTTTATTGTTTTCTATTTTTTTAATTGTATGAAAAATATAAATTTATCGGTAGAATCCCGTAGAATCTAATTTTAACTTACATTAATTTTAATTAATTAAATAAAAACATAGTGTTATAGAATGTGATTTTAATGAAAAATATCCAAAAAAATCGGTAGAAATTTGCCAGTCAATATTTTAATTATAAAACAGTATGTTATAATTAGGGTGTTCCCTGTATACACAGGGATAAACCGGAGAAATAGAACCGTTCCAATTACAAAAGATCGTGTTCCCTGTATACACAGGGATAAACCGCCTATTTTTAGATCTCGTTCTGACAACTCAGCGTGTTCCCTGTATACACAGGGATAAACCGTTTGTAATGAAAATATAAAAAAATGATTAGCGGCGTTCCCTGTATGCACAGGGATAAAATACAAAACTACTACAAACCGCTCG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.85%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.20,-8.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 80844-81052 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPV010000011.1 Gilliamella sp. B14384G15 NODE_11_length_117623_cov_202.275758, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 80844 26 100.0 35 .......................... CCGGAGAAATAGAACCGTTCCAATTACAAAAGATC 80905 26 100.0 35 .......................... CCGCCTATTTTTAGATCTCGTTCTGACAACTCAGC 80966 26 100.0 35 .......................... CCGTTTGTAATGAAAATATAAAAAAATGATTAGCG 81027 26 92.3 0 .C...........G............ | ========== ====== ====== ====== ========================== =================================== ================== 4 26 98.1 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : TAAAACAGTATGTTATAATTGGGGAGTTCCCTGTATGCACAGGGATAAACCGTTCATCTACAACTCGACAGGAAATACATGGAGGAGTTCCCTGTATGCACAGGGATAAACCGTTCATGAACATCACCGATCAAATCGATGTCGTGAGTTCCCTGTATGCACAGGGATAAACCGTCGGAATCTCTAGGAGACGCTGTTGCTCCATTGTGTTCCCTGTACACACAGGGATAAATCGGCGGGGCGTCAATATTACATAGCATTTTTTGCTATTCAAAAAAATCACAATTCTACATTTTATTGTTTTCTATTTTTTTAATTGTATGAAAAATATAAATTTATCGGTAGAATCCCGTAGAATCTAATTTTAACTTACATTAATTTTAATTAATTAAATAAAAACATAGTGTTATAGAATGTGATTTTAATGAAAAATATCCAAAAAAATCGGTAGAAATTTGCCAGTCAATATTTTAATTATAAAACAGTATGTTATAATTAGG # Right flank : AATACAAAACTACTACAAACCGCTCGCGTGGCGGTTTTTCATTGCCAAACTTTATCAAATAACATACCATTGCAAAAAAACATAAAGAATAAGGAAATGGTATGGAAAAGATTTTTTATTGTTTGCTGTTATTCCCATTTTTTGTATTTGCTGATGATTTCTATAATTGTAAATATGCAATGGGTACTGAAACAGAAGAAAATCTAAACTATTTGGCGAATGGAACTGTTCGGGTAACCAATGATAGATTTGTTGCTAAAGATTTAACACACAAGGAGCATAAATCGCCTAAATTTACAGAATTTACAGAATTTGCAGATAATTTATCTATTGCAGAGGACTCAGAGAAAGTATATGTTCTTGCAAATGATAGAACAAAGTATGTGATTACGACTAAAATAGGTAATCTTGTTTTTAAATGGGGTAATTGTACTCTTGATTTATCTATTGACTTCGAGAATGAAAAATTTGGTAACAAACCAGTAAATTTTTTTCCTAAG # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 86188-86582 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPV010000011.1 Gilliamella sp. B14384G15 NODE_11_length_117623_cov_202.275758, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 86188 29 96.6 32 ............................C TGCTGTTGCATAACTCAATGTTTTCTTACTTC 86249 29 100.0 32 ............................. CGCAATTTTTATAACAGTGTTGGGCAATATTT 86310 29 100.0 32 ............................. CGTTCCTCCTCTACGACATCCACCATTTTTAA 86371 29 100.0 32 ............................. ACGAATGGTTATTCGCGGGCATTTTGATGATA 86432 29 96.6 32 ............................T GATAACGGATTGACAATTTCGGCTGGGTGGGA 86493 29 96.6 32 ............................T GATAACGGATTGACAATTTCGGCTGGGTGGGA 86554 29 89.7 0 .............A........A.G.... | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.1 32 GTGTTCCCTGTATGCACAGGGATAAACCG # Left flank : ATTAACTAACAATCGTAAATTTATTATGGATAAATTCACAACTCAAATATCGTATTTTTGGGGCGCTACGTGCTAGATCGTAGAAGTTCTGAACCTTAACGATTTAGCAATTAAATACCTGAATAACGGAAATTACTGAGCCGCGTGTAACAAGTTCCCACGTTGGAATAAATCGAATAGTAGGCGTAGCGCTAAACACAGACATCGATTTATCCCTTTACACACAGGGATAAATCGACAGAGCGTCAATATTACATAGCATTTTTTTGCTATTTCAAAAATCACAATCCTACATTTTATTTTTTCTATTTTTTAATTACATGAAAAATATAAACTTATCGGTAGAATCCCGTAGAATCTAATTTTAACTTACATTAATTTTAATTAATCAAATAAAAACATAGTGTTATATAATGTGATTTTAATGAAAAATATCCAAAAAAATCGGTAGAAATTTGACGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : GTATACTAAATTATTTATAATAGGATTTTATAAAGCTCTCGTTTGAGAGCTTTTTGTTTTAGGATATTTATCCGATTTATTATAAGTTTCGTTGAATTTGCTTTTCTGTTGTTCATCCTTTTGTTGCTAATTCAATTTAAAATTTTTAACAATGCTAAAACCCACTTGGTCCATATTTACTCATCAGACCTTGAACTAACCACGTTTTATTACGGTTATGAATTCCTGTTTAATGGTAAAAAGGGTAATGCTGATTTTATTATGTTCGGTTATATACTCAGAAAAATCAGGAACGGACATCTTGTATAGAATGGGAGTATGTCATGTTTGCTGAAAATTTTTGGATGTCATTTGCAGTGTTAGCGCAATGGTGGACGTAAAGAGTACAAAAAGGGTGTGACGTTTAATGAGAGAGGGCGATTTGCATCATCTCCAGCCATCTATCAGTGAGGTTAATGGCGACCATTCTTATTTCCGTTACTCTCAATTTACTAAAACAA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 94138-94654 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACFPV010000011.1 Gilliamella sp. B14384G15 NODE_11_length_117623_cov_202.275758, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 94138 26 100.0 35 .......................... CCGCGGTTTTTGCCAGAGCCAAAGCCGATCTGATT 94199 26 100.0 35 .......................... CCGGTATACGGGAGGCTGTAAACAGCACCGTTAAT 94260 26 100.0 35 .......................... CCGGTTTTCACCCCGCTCCACATATTTTTTATAAA 94321 26 100.0 36 .......................... CCGCGATTACAATAAAAGCACGGAGCCACTTGAATG 94383 26 100.0 36 .......................... CCGGGCGATCTTTACATCGAGAGGAGAGGAACAGAA 94445 26 100.0 35 .......................... CCGCAAACTCCAACGGTGAGTAATACTGAAAATCC 94506 26 100.0 36 .......................... CCGGCAATTTCTCACTGAGGGAACGCGAAGCATTGC 94568 26 100.0 35 .......................... CCGTCCGAGTCAGTAGGAACGCTGGTTTATGATTT 94629 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ==================================== ================== 9 26 100.0 36 GTGTTCCCTGTATACACAGGGATAAA # Left flank : ACATTTAAATTAAACTTAAGGTGAAGTTAATTTCACCAAAAGAGTAAATTATGATAACCATGGCGATACAATTACCAAAAAAGTTGATATTTGTATTGGTTGCCGAGAAAGTCAGGTATTTCCTCTATATAGGGGTAAAATGTGTCAAAAAGTTTTAGGTTAACCATACGTTTCAGTATAAATATCAATAAACAATTTAGCTTAACCTTATGTTCCCTGTACACACAAGGATAAATCGGCGGGCATCAATATTACATAGCATTTTTTGCTATTCAAAAATCGCAATTATATATTTCATTGTTTACCATTTTTTTAATTATATGAAAAATATAAATTTATCGGTAGAATCCCGTAGAATGTAATTTTAATTTCTATTAATTTTAATTAATTAAATAAAAACATAGTGTTATAAAATGTGATTTTAATGAAAAATATCCCAAAAAATCGGTAGAAATTTGACAGTCAATATTTTAATTATAAAACAGTATGTTATAATTAGA # Right flank : ACCAATATATTCTATAGATAAAACTCGTTATTATTAATAAGAACTATATTGCTAATTTAAGGATAATTTTTCAGGTAAACTTTTGAGAATGATAACTTAAAAAAATTATAAAAAATCTTCGAAAAAAAGGGATTTAATTATCATAAACCAAATGATATGGTTGATTTCTTGAATTTTCGGACTTTTCCCAAATCTTATTGGTCTCACGATAATTTTTTGTGTATCAAACAATTTATTTTTTTAGAAATGGTACTCAAATATGATTTATTGCCAATTTCGAAATTAACCAAGAAAAAAATTATAATGATAAAACATTTAGAAGTTACATCAAACTATTTGCTAAATCTAAAACGTCGAAATTGAGATAATGATTTTTAGTTGAATTAGTTAATGAAGTAAACAATTTAATTAGTTCTATTAACCAAATAATTACTGCAATAATAATTCATGATGATAATAACTTACTTTTAGCAGAGAAAATAAGAGATTTGCTTAATAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //