Array 1 242441-243150 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBDC010000001.1 Heliomicrobium gestii strain DSM 11169 Ga0454006_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 242441 37 100.0 35 ..................................... GTGAAGGGGATGATCGTCAACAATACGGTGCAGGA 242513 37 100.0 41 ..................................... ATGATTCAAAGCATCACACCTTCCCTGAAGACGCTGGGCTA 242591 37 100.0 38 ..................................... AAGAAGACCTCCAGAAGGGCTGCAAAGGGGTGATGGTA 242666 37 100.0 37 ..................................... TCGAGATCGAAATGTTTATCCAACGCGTCGACACCAA 242740 37 100.0 39 ..................................... CTGCCGAAGGCAAAGAGGAAGGCAGGGGAGGCGCGGAGC 242816 37 100.0 36 ..................................... GATGAGAGTGATACGGGCACATTTGGACCGGCATTT 242889 37 100.0 38 ..................................... CATTCTCTTCCTTCAGACGAGGTTCAAAATAGGCTTTT 242964 37 100.0 38 ..................................... ATGTCCGACGCCAGTGGACGCAGGAGATAGAGCGCTTT 243039 37 97.3 37 .........G........................... ACACCGGAAACGCCGGAAACTGGACATTTGCACTTGC 243113 37 97.3 0 .........G........................... | G [243138] ========== ====== ====== ====== ===================================== ========================================= ================== 10 37 99.5 38 GTTTCACTGAATGACCCGATATGTAGGGGACTGAAAC # Left flank : CATGTCGACGGTGATTGAGGGGGAACTGGACCTTGTGGTCGATGTCATCCGGAAGATGCACGAGGTTCCCTTTGCCGCCGGCGCATTGCGGGTGTCGACAACCATTCGTATCGACGATCGCCGCGATAAACCGCTGTCCATGGAGGGGAAAGTGCGGTCGGTGGAGCAGAAGTTGGCTGAGTAACATATAAAGTGTTTTCTGTATAATGCAGGATTGATGGTAGAATGGATACGGTGGTGCGTTTTGTTTTTTTCGTAGCGCCGATAGCCGTTGTAATAGGAGCATACAGGAGCCGGAATTTCGTTGCTTTTTCGTTATAACGGTTTGATTCGCCCCAGCAGGGCACAATAAGAGTAAAGTTTCCAAACTATGGTGTTTTCGCAAGGGGTGGGGGTTTTCGTGCAGAAGTCCGCCCTTCGAAAAAATCGGTGGCTTGGGTGGAGGTGAAGAGGCTCAGAGGGCTTGATTTAGCTGGGCTTCTTCGACTATACCCCGTGCG # Right flank : CAAAAAATCATGTATAACTCATGACGATTGGCGGATCACAATCAAAAAAGGACATTTTTGGGCGTGACAGAAAATGACTATTACCGACATACCGGGGGTAAACCAGCTACTGCAACAGCTAGTAAAAAAATCCGAAATTGAACAGATAATTCTCTTTGGCTCACGAGCCCGAGGCGATAACGAGGAACGCTCTGACATCGACTTGGCTATTGCGGCTCCGAATGTCACGCTACATCAATGGTTCGATATAATGGATCTGGTTGAAGAGGCAGACACCCTGTACTCGTTCGATATTATCCGTTATGAAGAGGTATCTTCCACGTTAAAAGATAGAATTGCCATTGAGGGGAAAGTCTTATTTCGGCGGGGAGCAAAAAGCGATAATAAGCCGATAAGGTAAACGATAGTCAGAAGGGAAATGTAAAAAAATAGCGTTATTCTCAATAGAATGTAGCTTCGCTTGTGAGGTTAATATGGTGTTATCGTTTTTTCGGGTCGCT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCACTGAATGACCCGATATGTAGGGGACTGAAAC # Alternate repeat : GTTTCACTGGATGACCCGATATGTAGGGGACTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 2 261310-262613 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBDC010000001.1 Heliomicrobium gestii strain DSM 11169 Ga0454006_01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 261310 37 100.0 38 ..................................... TAGACAAAACCCTTATCGCGCCAGCCGAACCGGTCAGT 261385 37 100.0 38 ..................................... AGCCTGGAACAAGTAAAAAGGTGGCTGCAACTCCCAAG 261460 37 100.0 37 ..................................... GGGAGATAGGTATAGCGCCCATCTCCCACAGGTGCGT 261534 37 100.0 36 ..................................... GCGGCTGCACGGCCAGCGTGAAGCGGATGGTCGTCT 261607 37 100.0 38 ..................................... GAGGCAAAGGACGAAACCAGCACGGCCGCCGTGATGGC 261682 37 100.0 37 ..................................... CTTTACTAAGCACGGTGTAGGTTTCTCCGTGAATCGT 261756 37 100.0 37 ..................................... ATGAAAGCCTCAACCGCTACCGGACTATCGCCGCAGA 261830 37 100.0 38 ..................................... AACGCCGATATTCATTTCTCGCGCCGCCTGCTCCTGGG 261905 37 100.0 38 ..................................... TGATGCGGTCGAGGATAGCGAGGTTGGCTTCCCGCAGT 261980 37 100.0 38 ..................................... TCCCAGAGAATCTAGGAGCTATTATAGACGCCTGGGAA 262055 37 100.0 37 ..................................... GATTTTATGTCAGCGTGACCAATATGATTTGATGCTT 262129 37 100.0 39 ..................................... AGCGTTTCGCAAAGTTCTCTGTTCGTCGGCGGCTGTCGA 262205 37 100.0 38 ..................................... GGAACACGGATTTCGTCAGGCGGACAATTTCCGTACCG 262280 37 100.0 36 ..................................... ACTGTTTACCTTGTGCAGCTTTACCGTGCCTTTGCC 262353 37 100.0 38 ..................................... GTTCTGTCCCCGGAAGCATCCACCTGGCCGAGATAGTC 262428 37 100.0 37 ..................................... GTAACTTGGCAAACATGGCCCTTCGCCAGCAGCGGTA 262502 37 100.0 38 ..................................... GAGCCGCAGTAAACTGCGCCGCCTGCTCGCCGGTCACG 262577 37 94.6 0 ...................................CA | ========== ====== ====== ====== ===================================== ======================================= ================== 18 37 99.7 38 GTTTCACCGAATGACCCGATATGTAGGGGACTGAAAC # Left flank : TCAACCGATGATTGTGGAGGTGAAGTTTGGCGAGCCCCGCGATTTTCACCGGTTGGCTACGGCTGGGTATGCCCTCGTGATGGAGGCGGTCTATGAGCATCCCGTCGATGTGGGCTGTCTCGTCTATGCAACTTTTAAGGGGGACCGGGTAATCATCCGGCGGGATATCCACTTGATCGACGACGAACTCCGCCAATGGTTTGTTGAGGCGCGGGATGAGAAGGCCCGGATGATTTATGAGGAGATCGATCCAGGGCTCGCCAAGGATTGTCCGCAAGCCTGTCCTTTTGCCAGTCGTTGTTCGTAACAGAAATCGGCGATTGTTGCCGGGCGCGCGCTGGGGTACAATAGAATTGATGGTTTCCAAACTATGGTGTTTTCGCAAAGGGTAGGGGGTTTCGTGCAGAAGTCGACCTTTCGAAAAAATGGGTGGTTTTTATGGAGGTGATGAGGCTGGGAAGGCCTGATTTTAGAGGCTTTTTTCGGCCTAACCCCGTGCG # Right flank : AGGGGCGAGCCCCTTGTGCCCAAAGACACATAAATTCCTGCCAGTAAAAAGGGAATCCCCCCAACGCCGTCGAACCCTTCAACCAATATGGTTGTAGGAAGGTGATTGGGGTGCTGAAAAGAGGGATTCTGCTCGCTCTTGCGTTTTTGCTCTCCCTTTCCCTTGTCGGTTGCGGCGGTCCGTCGAGCGGTGGATCGAAGTCTCTGATCGTGCAGGACAATGGCGCTGGTCAGCAGGCCGAGACCCAGAAGGCGACGCCGAAGAAAAAAATTGCCCTCGTCATGAAGACCCTGACCAATCCCTTCTTTATAGAGATGGAAAAAGGAGCGCGTCGCGCCGAAAATGAGCTGGGCGTCAACCTGATCGTCAAGGTGGGGGCCAAGGAAACCTCCATCGCGCAGCAGATCGCCATCGTCGATGAACTCATCGGCGACAAGGTCGACGCCATCGTCATCGCTCCCGGCAGTTCCACTGAACTCATCCCGGTCCTCAAAAAGGCC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCACCGAATGACCCGATATGTAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 101407-102590 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBDC010000007.1 Heliomicrobium gestii strain DSM 11169 Ga0454006_07, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 101407 37 100.0 34 ..................................... ACGGCGTTGTAGCGGATTGTTTCGTCATAAATCC 101478 37 100.0 35 ..................................... CTCATCGATCCAGCAGTCGAACCAGTCTCTTGCGT 101550 37 100.0 34 ..................................... CTGGGTGAGCTGGAAAAGGACTTTCAGCGTGAAT 101621 37 100.0 34 ..................................... CGGGTAGCGACGGTATATTTTCCTGTCATTTTGG 101692 37 100.0 34 ..................................... ATCAATGACAACTAAGCATTGACTTTCCTTCTTT 101763 37 100.0 34 ..................................... ACCGCCTCCGCGACAACCTTCTCCTTCCGCCGCT 101834 37 100.0 35 ..................................... TTTGTGGAGAAAGATGCACTATCAAACGCCAGAAG 101906 37 97.3 38 ...........................C......... AGTTGGGTGTCGGGCTCTTTGTCGGTGCCAGCGATGAC 101981 37 94.6 34 A...............G.................... AAGGTTCACCAGGTGTATGCCCGGCAGAACGCGG 102052 37 91.9 36 .T............A.G.................... GAGACGGCCACAGGATGTCGCGTGGACCTGGAGCGC 102125 37 89.2 37 .T............A.G........T........... TTGATGCAGGAGCGCCTGTACATGGGGAGTGAAGAAC 102199 37 89.2 34 .T..........C...G...............C.... GTGACCTGCTGGGCGAATATCTCTGCACCCTAGC 102270 37 94.6 34 ..................A.........A........ TTTGAGTGGACGATACTGCATGATGGTCTGCATG 102341 37 89.2 35 A........A.....TG.................... ATGACATGGGGGTACATGGAGTTAACGTCTACATA 102413 37 89.2 35 .T..............G........T..T........ TTTTTTGACGGGCGCGGACTGCGGCAAGTAAATGT 102485 37 86.5 33 .T.C............G...........T.....G.. ATGGCCAGGGCGTCGGTCAGGTGGGTTTTCCGA 102555 36 83.8 0 .T....G..........T..-.......A.....G.. | ========== ====== ====== ====== ===================================== ====================================== ================== 17 37 94.4 35 GATGCAACCGCATCGAAAGATGCGGCATCATTGAAGC # Left flank : AGACATACGAACTGAGATAGGCGCGAATCGATTAGCCATCGAAGCATTACCGTTATTTCCAGTAATACCGGGAATGCGCTATTGTCTCACTACAGGTTTCTCGCGCCGAAAAAATGAGATTTGGTTTACCTGGCCAGTTTGGGAGGTGCCTATCAACATCCCCGTATGCAGAACACTACTGGCTATGAAGCATCTCCAAAATGAAGAGCCTTTACTAGAAAACCTTCAGGAGATAGGAGTTGTGGAAGTCTTTCGTAGTCAGCGGATTTCTGTTGGCCTATTTAAGTACACGAACTTTACTCCTGCTTGTTCAATGTAAGAAGCGAACCAAAAGTGATCATAAAAACCCTAGGAGGTTCGCGAAAGATGAAAAAGGCAGTAAATACTAGGGTTTCGGAACTTGGGAACTATGAACCAGTACTCTTAAATGAAGGAATTCTGTGGGGTTCGCGCAAATGGGGGCTGAATTCCTTGAATCATAAGGGTTTATCAGCCATAGC # Right flank : CATGATGATTTTGTCAACGTAAAAGTGGTCCACAGTGATCACGAAAAAAGTGATCCACTATGCCTTTCTTGGTTTACATTAATGTTTATTTATGGAAATATTGTGGCCTACGTTTCCTTGTGTGTCTATATGTAAACTCTGACATCCCATGGGTGTCGGCCCTGTCAGAGGATGCTTTTGGCGTTGCTTTGGAGCAAGGCCGACCCGGAGGCCCGGTAGGGCCGCAGGGTCGGAACCGTCTCTTCACTTATGCATTGGGTAGGCTTTCGAGTCGCTTCATACTCTGCCGGAAACGGTACGACTCGCCGTTCATGAGCAGGATGTGGGCGTGGTGGGTCAGGCGATCCAGAAAGGCCGCGGTTAACTTGTCATTGCCAAAGATCTGGGTCCATTCGGCAAACTCCAGGTTGCTGGTCACCAGGAGACTGGCTCGCTCGTAGAAGGCGGAACAGAACTGAAAGAGCAGTTCCGCCCCTGTCTTGCTGAAGGGAATGTATCCC # Questionable array : NO Score: 2.62 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATGCAACCGCATCGAAAGATGCGGCATCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-12.50,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-29] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 5399-5586 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBDC010000009.1 Heliomicrobium gestii strain DSM 11169 Ga0454006_09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 5399 37 100.0 41 ..................................... AGAATTCAGTCAGTACGCCATTCCACTCTTCGCCTTTATAC 5477 37 100.0 36 ..................................... GCGGATGCGCGGCACGTTCTCGATCATAATCACGCT 5550 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 3 37 100.0 39 GTCTCAGAAGAGGTTAATTCCCGTAGGGAATTGAAAT # Left flank : GCGATGCTGATCGACATCGTCGTCGCCGAGCATTACCGAAAAAACGGATTGGGTCGTGAGATGATGGAGCGGATCGTCCACCATCCCGAACTGGAATCGGTGTCTATCTTTGAACTCTTCTGTGCGCCGGAACTGACGCCCTTTTATGAGAAGTGGGGATTTGTTGAGCGGTTGGGGAAGGTTACCTGTATGCGGAGGAGATTGGAGCAAAAAATATAAATATCGTCTTTGATTTACCCTTTTGTTCTATCTTAGGGATGGACTGGAAAGTAGAATTATGCTAGCTTAAGTGTGAGAGCCATAAAGAGGACCGCTATTTTTTGGGTTTTGCTGCGCGAGCGACGATGGTCGGCAGAAAACCCGGGGGTCGCTCGATCCGATAAAATCAAGGGTTTGCGGGTGATCGAGTGGTTACGTGCGGGTTCGTTTGGGAGCAATAGTGGCCTCGCTCGCAAACGGCGGCGCGAGGCCTTGTGGGACAAGGGGGAGAGAGGGGCGCA # Right flank : TACTAGACGATACCCGCGTCGAAACCCACCAAATCGACCCTTCGCGAATTTAATTTGCTCCGAGCGGGAAGGGACACGTAGTGGGCGTAATATAAAAATCAAGCCACCTGAAAAAAACAGTATTTCAAAAGAAAGATGCATAAATTTATTTTTTGGAAAAGGGGGCTGTATTATGGGAGCCACGGGCAAATTATTGGGAACGATGATAAGTATGGTTTTATTATTAACGTCAACAAATCCGGTTTCCGCTGAGACAATCAACGACATTAAAATAGTTTTATATGGAGAAGAATTAAAAACAAACGATTTTTCTATAAATAAAGATACGAATACTATTTATATCAAAAAGAAAAAAACAGTATTAGGAGAGACTGCTGATAAAAAAATATTATTGTACTCAGAAACACAGGGGAACGGAAATTTTTACGGAATAACATTAGAAGATAGTACCAATAAGAACAGAAAATATTTTGAGTGGAGTAATATTTGCAATGCTACTT # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGAAGAGGTTAATTCCCGTAGGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.50,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.64 Confidence: HIGH] # Array family : NA // Array 1 261431-260813 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBDC010000002.1 Heliomicrobium gestii strain DSM 11169 Ga0454006_02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 261430 37 100.0 36 ..................................... GGGCCGCTGGGACACGGATCGGCGCTCATCCGCCCG 261357 37 100.0 33 ..................................... GCTCCTCGTCGACCTTTGCGTACTCGGCAATCA 261287 37 100.0 34 ..................................... GGCTGAAGCCCGTTTCATGACAACGCCATTGTGT 261216 37 100.0 37 ..................................... GCATTTTCAGTGTTACCCGAAAATGCCTTGCCATTCC 261142 37 100.0 34 ..................................... GGTTTGACAGGCAAGGTTACGAATTCCCCATAAG 261071 37 100.0 38 ..................................... AACGGTGCAGGAGTCGAAAAATGCGCCAGGGTCATCGG 260996 37 100.0 37 ..................................... TTTTCGTTTGCCATGGTGACGTTTTCACCTGACCCTT 260922 37 97.3 37 ...........T......................... AAAGAGAGTGGAAATTTTTATCCAATATCTCAGTGCG 260848 36 73.0 0 ...-......C.............T.A.G..GTT.CG | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 96.7 36 GTAACAGGAAACGATAATTCCCGTAGGGAATTGAAAT # Left flank : AAGGTGTTCAAAACATTGAAAGATTATGGGACCCATGTGCAAGAGAGCGTCTTCGAGGTGGTGCTGATGACGGAGGATTATGTGGAACTGCGGCACAAATTGCTCCGGCGCATCCACCGCGATGAGGACAGCGTGATCTTTTACCGCCAATGCCGCGCCTGTGAACACGATGTGGAGCGGTTGGGGCGGAAGGTGGAATTGGTCGGGATCGGGGATATCGTGTTGTAAAGGGGGATGGACTGGAAGGGGTTGGTGTGGTAGTTTTATTATGGGGATAGCTGTTCAGCGTCAATGGTGACGCGAGGTCATGGTGCCGCTACTTGGATTTTCCCGCGCGAGCGACGCAGGTCGGCAGAAATGCCGGGAGTGTCTCGATCCGATGAGATCAAGGGTTGGATGGGTTTTGAGAGGGGAGAAGGCGATGAAAAGGGGGACGTTTTTGGCGTCGCTCGCAAAGGGGGGCTGGAGGGCTTGTGGGAGAAGGGCTGAAAGGGGGCGCA # Right flank : GGACGCACCCGAAGCAAAGGTAAAGAACAATCAACCCTCGTCAAAAATTCGACGAGGGTTGTAAATTTTAGAAGGAAATGTATGCATTTTGTAGAATAATCAGAAACATAATCTGGTTTCCCCATAAAGACAACAAACTGAAACGAATCCCCTGTCTTGCATTAATCAAGGAAGGAGGATTTTATTATGGACAAAAAAACATATCAGACGATTCTCCTTGCTGGTCTCTTACACGACATCGGTAAGTTTTTGCAGAGAAGTGGATATCCAAAACCGAGTAACGGTGGGAGACACCCTCATTATTCTGCCGATTTTATTAAAAAACACTCGGAACGGCTCACTCCCTATGCCGACCCTAAGTTATTGACAGAGCTCGTCCAACGCCATCATGAATCAGACAAATACCCTGCCGACTTACAGGTGAAAAATGCTACTGAGGCGATACAGCCATTGGCCCAATTGATCAGCCGTGCAGACAATTATTCGTCTTACGAGCGGGG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAGGAAACGATAATTCCCGTAGGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 2 269448-268005 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBDC010000002.1 Heliomicrobium gestii strain DSM 11169 Ga0454006_02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 269447 37 100.0 34 ..................................... TTGTAAAGCGTAAACATTTCGGCGGCGTGGTCTA 269376 37 100.0 39 ..................................... TCGGTGGTGAAACGCGCGCGAATTTGAGACAATTTCTCC 269300 37 100.0 37 ..................................... ACGATCACGTGCCACCAGCCGGAGAGGAAAACGCTGC 269226 37 100.0 38 ..................................... GATAGCAGTAACCTTCTGCTAAACAAAAGGGCACTAAC 269151 37 100.0 38 ..................................... TTCATCCTCTTGAGGTCGGCGGCGAACATCATCAGGCT 269076 37 100.0 34 ..................................... ACTACTTTGGCGGCGTCTCCGTAGACATCCGAAA 269005 37 100.0 40 ..................................... GCCTTGATAAGGTGCTGTCAGATCAGGTTTTGAAGAACAG 268928 37 100.0 34 ..................................... GCCACCCCCGGAAACTCCGACCACTCCCGTCCAT 268857 37 100.0 35 ..................................... CTCGTACTTGGGCAATATCTCCCGCAGCCCTTCTT 268785 37 100.0 38 ..................................... GCAATTTAAGACCATGCTGAAGGATATTATGGCTAAAA 268710 37 100.0 36 ..................................... TGGCACGTGAAAAAGATCTTGCCTTCGTTGCTGCCG 268637 37 100.0 39 ..................................... TAAGGCACAATATCCGCGCACCCATGCACCCGGCACAGG 268561 37 100.0 39 ..................................... AACACTGCCCGCCCGGTCGACTGCACCGCACCGCTTCGA 268485 37 97.3 38 .....................T............... GTGGCCACAAAGATTTTGTTGAACAGTTGAGCGACGTA 268410 37 100.0 38 ..................................... GTACCGAACGAATAGTTAGGTGGAGAAGGAGGAGCAGG 268335 37 100.0 35 ..................................... CCCGCGCCTTGCAGGCCTCCTCCCACTGCTTCACC 268263 37 100.0 38 ..................................... TCAACAAACTGAATAATGTCATTAAACGCAAAGTGTCT 268188 37 91.9 35 ...C...A..A.......................... ACGAGGTTGGAATTGCGGGCTTCGTTGATGATTGA 268116 37 83.8 37 ...C..AA..A...................A.A.... TTGTTAAGTGTAAATTGATAAGCGATGTCGTTGTTTC 268042 37 89.2 0 ..........A...C..............T..A.... | T [268031] ========== ====== ====== ====== ===================================== ======================================== ================== 20 37 98.1 37 GTATCAGGAACCGATAATTCCCGTAGGGAATTGAAAT # Left flank : GGGGTTAGGCTGGAGAGGTTGTACTCAAATAGCTAGATAAACCTCGGCATAAGTTTTTGTAGGAGCGCACAGTTTTTTCTATAGCTGGTTCCGGAATTTAGAGTTTTTGAATGGATGTAGGCAGGAATTATGGAAGAAATTACAGAATGGATGAAAAGCATGATCAGCGATACTGTTCATCCTCGGCACATGGATCATCTGCACATTCGTGCGATAGCTCGGACGGTGACCGCTGTAAATTTGCGTGAGTGGAGCGAATCGATAGGGACGCATATTCAGCGGGAATGCTATGGCAACGAAGTCTTCCCGTTAGAGGTCCATTAGAGATCTCCTCGCGAGCGACGCAGGTCGGCAGAAAACCCCGGTGTCGCTCGATCCGATAAAATCAAGGGTTAGCTGGGGTTAGTCAGGTGGAAAAGCAGTGAATGAAGAGAGAAAAACGGACTCGCTCGCGAAGGGGGTTGGGAAGGCTTGCGGGATAAGGGCTAGAAAGCCCCGCA # Right flank : CGCAAGATATTTAACCCCAAAGTGTGCACCCTATACATTGACAACATAAAGGACATATCTAAACTTCCATGAAACACTTAAATACAAGAAGGAAGATGTAACCCCTGCAATGTTGCTCAGCATAACAGAAAAGCCATTTGCTTTAATAGCGAATACTTTCAATTCAGCGCGACATATTAAGGTGTATAAAAATCAATAAATAGTATCTTTTAGTAAATTGCAAGTTTAGGAGGCAAAATTCATGCCACAAGTTAACATAGGAAACATAGTTACTTTAGATGTAGCAAAAAAAGAGGAACTACCAAAATTTAAAAGAGACTTACAGGAAGCGTTTGCGGTATCAGTGGTTGAAACATTTGGTTCTGACTTAGATGAACCCATTCCTTCTGATAAAGATATAGAAGAATCGTTCAATGCCGCTGGAGCTGTTATCTATCATATACTCTCAAATGGAAAAAAGGCAGGCGGTGCTGTACTTATTATCGATGAAATGACACAGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCAGGAACCGATAATTCCCGTAGGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 3 271780-270546 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFBDC010000002.1 Heliomicrobium gestii strain DSM 11169 Ga0454006_02, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 271779 37 100.0 40 ..................................... AGATCGTAGTAACTTCCAGAAGGGATAGATAACCACGTAG 271702 37 100.0 36 ..................................... TATCGAAGAGGCAGGGCGCAGAATCGCTCTAGCCGT 271629 37 100.0 36 ..................................... GCCCACTGTGTCCCATGACAGTCGCCTCCTCTTTCT 271556 37 100.0 40 ..................................... CATTCGGTGTGCGCAGTCAGAATAACGAGATTAAGTTTGC 271479 37 100.0 37 ..................................... TCGCTGTCACGATGGCCCGAAGTAGCTGATGCGCTTC 271405 37 100.0 37 ..................................... AGGAATTGGGAGGTGTTCCGATTGACGAACTAGTCAA 271331 37 100.0 41 ..................................... GATACCGGCAGTCACACCCCAACACAGCCCGGTTCACCAAG 271253 37 100.0 37 ..................................... ACGTAGGAAATTGCCCCTGCGTTGCAGTACCGGTGGT 271179 37 100.0 37 ..................................... TTTTTAAACGTTGATTTGCCATGTTGCGGCCGAGTTT 271105 37 100.0 37 ..................................... GCTGTCTTGCGAAGGGCCAGGGCGACAGCTTGATCCT 271031 37 100.0 39 ..................................... CCATGCCGGGTCTAGCACCAGCCACCCAGTAATCACCGA 270955 37 97.3 36 ..........................T.......... CCTGTGGCGCCCGTCCCGGATGTGACGCCGGTGAAC 270882 37 100.0 41 ..................................... TTTTTGTTGTATTCACCATCCCAATTTACAAAGTCTTCTCC 270804 37 100.0 38 ..................................... GCCCTTGGCTTATAATCAGCAGCCCGCCGCATCAATGG 270729 37 100.0 37 ..................................... GTCGGCGCTGGCCAACCCATGAAAGACATGGTGGATT 270655 36 97.3 37 ................................-.... TCCACTCAAGACAATCCCGACATTCTTCACAAACCGT 270582 37 94.6 0 .....................T.T............. | ========== ====== ====== ====== ===================================== ========================================= ================== 17 37 99.4 38 GTCTCAGAAGACGATAATTCCCGCAGGGAATTGAAAT # Left flank : TTATTCGCAACGGGATAAGAACGGGTAGTTTTGTAAATCACGTATGTTTATAATAAAAACAGGCTAGGGAATCTCTCCTTAGCCTGTTTTTCTATCGTTAGCTCTGGCAATTACGGTTTTGCTTAGGCATAAGCAGGAATTGTGGAAGAATCTATAGAAGGGATAAAAAACTTAGTCGGGGTTCCATTTCGTCGTTTAGATATCATAGGAATGGCCCGGCTTATCGATAACCTATGTAATTTTGAGTGAATCGGTCAAACGATAGAGAAGCATGTACAGCGGGAACACTACGCCAGCAAGGTCTTCCTAATAGCGGCGAATCGGCGATCTTCTCGCGAGCGACGCAGGTCGGTAGAAAACCCTGGTGTCGCTCGATCCGATGAAATCAAGGGTTTGCGAGGGTCAAGGCGGTGAAAAGACAATGAATTGTGGGCTAAAATCGGACTCGCTCGCGAAAGTGGCCCGGAAGGCTTGTGGGATAAGGGCTAGAAGGGCGCGCA # Right flank : GCGGACTCATGTTTACCGCAGGGATTCGAAATGAATAAGGATGGATGGGATTCGTCAGGTGTGCCTAACGGTGACAGGAAGCAATAATTCCTGCGGGTACATGCTATCTTTAACAGGCTTAGTGTAAGGGTAAGTTAGATTTAACTAAACATGATATACTTGAAACAGCCGAACAGTTTAAATGCCTTAAGGGGGGCTTTCCATGAACGATAACAAGTTCCAAAGCCTCGTGCTTCAGGCGCTACGGGATTTAAAAGATGGGCAGCAGCGTCTTAAAAGCGAAATACGCGGTGAAATAAATTCACTCAAGCAAGAAATGAGTCGTCGATTTGATCGCCTGGAACGGAGCCAGGAAAATAATATAAAGGGGATGCTCAAAACGATAAATCGTAAGATAGACGATGTGCAGGAAGACCAACGGTCTACTACTGCCATTATTGGGACATGAAGTAAAATTACGCTCCCTTTCCCGACGGCGTGTGTGAAGTGTGGAGAAGGTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGAAGACGATAATTCCCGCAGGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA //