Array 1 59424-57870 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWMS020000009.1 Escherichia sp. 94.0001 MOD1-EC7315_9_length_136211_cov_109.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 59423 29 100.0 32 ............................. TTCCTGTAGGGTGCCATCAGATTTTCTGATCT 59362 29 100.0 32 ............................. GCTGTAAAGACAGTGTAGTCCAGCTTAGTGAA 59301 29 100.0 32 ............................. CGATTCCTGCGGCCAGCGCCTGTCATGGTTAT 59240 29 100.0 32 ............................. GCGTTTGAACCGGAATTTTACCGGGTTTTCAT 59179 29 100.0 32 ............................. GAAAATCAACCCGGCGACAATATATACAATCG 59118 29 100.0 32 ............................. ACACCATAAAGAAAAGAAAGAATTTCTTGGAA 59057 29 100.0 32 ............................. TTATCCTTTATTTATATATGAGGTTTAATCCA 58996 29 100.0 32 ............................. TCTAATGAAGCGCCATAATATTGCAGGGTTAA 58935 29 100.0 32 ............................. AACGATAACGATAAAAACTACTGGTTGCTTGA 58874 29 100.0 32 ............................. GGAGAAATTAACGCCATTCACCCTTTCAGAGA 58813 29 100.0 32 ............................. GCGAGTGCCCCATCTGTAAACGCCGGGGAAAA 58752 29 100.0 32 ............................. ATGTGAGTTTGATCCGGTCAGTACGCTGGTCT 58691 29 100.0 32 ............................. TTAATATTGTTCCCTCAAACGTCGTCTTACCT 58630 29 100.0 32 ............................. ATTTTTACTGAGATGACGGCTCGATTTACAGC 58569 29 100.0 32 ............................. AAACCCCCTGGTGTGCTGCGTTCACCGGAGCT 58508 29 100.0 32 ............................. CGAACCCTTGAACCGATAAGTGCGCTGTTTTG 58447 29 96.6 32 .............T............... TGTAATAGGGGTGTTATATGACAGACGAAGAA 58386 29 96.6 32 .............T............... GTCACGATAGCTGCGCAAGTTCTTCTCGCCAG 58325 29 96.6 32 .............T............... TAGAAGAGGAGGGCGCTGATTTCCGGGGCCAG 58264 29 96.6 32 .............T............... TGCCCACTCAACCCGTCGCCGATCCCCGCCGC 58203 29 96.6 32 .............T............... GCAACCTGGAATATGCGGTTGGCAATGGAGAA 58142 29 96.6 32 .............T............... GATAAATACAGTATATTCCCACGCTCCGCTGG 58081 29 96.6 32 .............T............... TTGCGACGCGCTAAAAACTCTCTGAAGCGTTA 58020 29 96.6 32 ......................A...... ATTGATTGTTTTTCATTCTGTCGAATGACAAT 57959 29 96.6 32 ..........T.................. TTTTATGCAGCTCCATCGTCAGCACATCAAAC 57898 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCCGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCAGCTATCCCGGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCAGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCGATCTGGCTACTGGAAGTGCGTGCTGGTGTTTATGTTGGTGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTCATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGGTTGGTTTCGTTTCTTCCTGTTGAGAATCAATAAGTTACCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAAATTGTTTAAAAACAGATACGTATGCTTAGT # Right flank : CTCTCGGTTCTGGGGTACTGTTACCCATAACTGAGCTCCCCCGCGTCAGTGGGGGAACTCCCAGCTCCCATTTTCAAACGCCTCATGACGCCTTCGCCAGTTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGTGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCGTTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCTTCTGGTGTATTTACGCCACTATTAAAATAAAGCTTATCGCCCACG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 86023-85140 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABWMS020000009.1 Escherichia sp. 94.0001 MOD1-EC7315_9_length_136211_cov_109.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 86022 29 100.0 32 ............................. GGGATGGACGCCAGCAAATACGCGGAATCTTT 85961 29 100.0 32 ............................. GCATTACCGTTTCGATAGAGAAAAAGCCGAGC 85900 29 100.0 32 ............................. CAGTTATTAAAGCGGCCGGTTGAAGCGTTAAC 85839 29 100.0 32 ............................. TTTGCTTTCTTCGCTATTAGCGTGCCGTCGTC 85778 29 100.0 32 ............................. CAGGTTATCTGCGTCGGTTTTCGTCAACTCCA 85717 29 100.0 32 ............................. CCACTTAACCGAACTTCATCGCAAAACACGCG 85656 29 100.0 32 ............................. AAATTTATCATCATTGTGGTGCTCTTAGTTAT 85595 29 100.0 32 ............................. CGCCGGTAATCAAAACTGGTGCCTGGGCGACC 85534 29 100.0 32 ............................. GGCATCTATCTTTTTTAGAACATCTTTATGAT 85473 29 100.0 32 ............................. AGGTTCTGTGGCCTATCGTCTGGACTGAGAAA 85412 29 100.0 32 ............................. CCGAAGCCGGTTTCGAAAACGGCTGGATCATT 85351 29 100.0 32 ............................. CATCACTGGACGCCCATTTGAATAACTCACAG 85290 29 100.0 32 ............................. ATTCAGCAAATAGCGAATTTCATAAATATGAT 85229 29 96.6 32 .T........................... TACGTTAAACGCCATCTGTCATGGGTCGTCAT 85168 29 93.1 0 .T..........................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCAATTAGCCAGAAGGACGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAACTGGCGTTTATCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCCACTCATTTATATTCTTTGTCGCCTCTGAAAAAACTCCATTTTGCCCATTCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATTTTAAATATTTACTTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATATGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //