Array 1 9426-9752 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALVY01000171.1 Gloeocapsa sp. PCC 73106 scaffold_00171, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 9426 36 100.0 36 .................................... TCCGTTCTTGATCTTCATGTAAGTCCCCCCGTTGAT 9498 36 100.0 35 .................................... CGTGGGAAGACTACCTAAACGCCGCCTAAAATGCC 9569 36 100.0 38 .................................... GGGCTTAAAACTTGGGAGTACTTAGCTAGTTCAATAAA 9643 36 100.0 38 .................................... TTTGGGTGGAAGTTGAGGAGGCAGTTGCTCCAGGAGAC 9717 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 5 36 100.0 37 GTGCCCTAACCTTAGATGCCATAAGGCGTTGATCAC # Left flank : AGTTTCCCTAATGAGTAATCCGCTGATGTTGGGGGGAATCGCCGGCTATACTACCGCATTTTTAACCTTTGTTTGTTTACTAAGTTGGGCTGATATCAGTCTGGTGCGTCCCGCTACAGCGATGGGTTATATCTTTAGTCTATTGGGTGCGCGTTTTTGGCTGCAAGAAAAAATCAGTTTTAGGCGATTTTTGGGTATTATTCCCATCGGTTTAGGTATGGTGTTAATTGCTTTACCATCGTTCTAAAAATGCAAGCACCTGCGGCTGTTGCTGGAATTTGTACACAAAAAATGGCTGTAAAACTTGCCTAGTAAGAACTCAAAGCTCTTTTTATCTCTCAAGAGATGCTTGTAAAATCCTGAAACCACTGATATACAAGGCTTAGAGAGGATGAAAAAAATCTTTTTTTGAGTCTCAGAATTTTTTTCTTGTCATTAGCGACAAGGTACTTGTAAAATAGATTGAGGACGCAATCTAGCTAGCACTTTGAGCGATCGCA # Right flank : CAGTTAACGATAGATCCAGAATAAACTACCTAAAGTAATAACTAGTAGAAGTAAAGATACTACAATAAACTGGTTATCTTGGTTAGAGTTGGAGGGAGATTCGATCGCTTCTGGGGCTGTTTTTCCAGGTTTAACGCTACCACGGTTACGATTAAACTCAGGGGAACTTTCAGCGAGGGGGGTTAAATCAGGAATTTCGCTCATCCATTCTTTAGGTCTATTTAAACGAGGAGCCTCAATAATATAGAGTAGGTTTTTACTCTGTTGACGGATGTCGGGATGAGGATGGGTTAACAGCTCCCGACAAAGAGCGATCGCCTCATTATCCATTTGAGCTGCTTGATAAGCGGTTACCAACCAGATACGCACTTCTCCCCCTAAGAGGGTTTGAGATGAGACTCGTTGACTAGCTTGGTGCAAATATTTTACACTCAGACTATACTCACCTCTTTCTAGGGCTTCTTGGCCCATTGCATAATCCCGTTTTAACTGTTCTTTGT # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCCTAACCTTAGATGCCATAAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 48654-49836 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALVY01000209.1 Gloeocapsa sp. PCC 73106 scaffold_00209, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 48654 36 100.0 36 .................................... TTATCATCTGTTATCGCTAATTATCGTGTTGGTATC 48726 36 100.0 36 .................................... ACTACGACCTAGACATGCCAGACGAAGTATGTGCGA 48798 36 100.0 36 .................................... TTGCGATAATCGGCAATACCTGTGTCGTTACTTAGT 48870 36 100.0 36 .................................... GTAACAAGTTTAATCCCCGATAGCATCAAGCACGAG 48942 36 100.0 35 .................................... CACCGCAGCAAAAGAGAGCGTCAACTCCCTAAAGC 49013 36 100.0 37 .................................... ATGCTCGCCAAGGGAAATATCAAGACCAACTTCAGCA 49086 36 100.0 37 .................................... GGGGTTTTTGCTGATGCAGTTGAAAAAACTAGTCCTC 49159 36 100.0 35 .................................... AGATGCTAGTTGCAGTACAAGCGGAAGATGCTTTA 49230 36 100.0 35 .................................... ACGCTGCTATCGGAGAAAAGGAACCATCTAAGCCT 49301 36 100.0 35 .................................... GTCTTTATTTCCCCCACCACTTATCTCAAACATCT 49372 36 100.0 35 .................................... CGCGAGTACGAGGCTTTTGGAATAGCAGTTCCACA 49443 36 100.0 35 .................................... TATTGCGCCCCTTCAGGAAGGTCACCTCTTTGGGG 49514 36 100.0 36 .................................... TAGATAAAGATGTTTTGGATATTTGCGATCGCATAC 49586 36 100.0 36 .................................... CACCAGTTTCAGCAGCTTTGGTAGTTTGTCGCTACC 49658 36 100.0 35 .................................... ATCGCAGGGAGAATCCAAGTAGGAGACTTGTACCT 49729 36 100.0 36 .................................... GATTTGTAGCAAGTTCAATCAACCATTCTTTAAATA 49801 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 17 36 100.0 36 GTGCCCCAACCTTAGATGCCATAAGGCGTTGATCAC # Left flank : TTCCAAGCGATGGCGCAAAGCCTACAAACTTCTAGAAGGCTACGGAGAGCGCATTCAATACTCTATTTTTCGCTGTTGGCTCAGTCAACGTATGCGTGAAAAACTACGTTGGGAATTGGAGAAAGTTCTCTCTAAAGAAGATGATTTACTTTTAATTCGTCTCTCTCAACAATGTGTTCGAGATTTACCCAATTACAACCGCCCTAATACTTGGCTTTTGGATGAACGAGGATTTCGAGTCATCTAAAAATACAAGCACCTGCGACTGTTTCTGTAAACGGCACACAAAAAATCGCTGTAACACTTCCCTGGTAAGGACTCAAAGCTCTTTTTATGCCAATAGAGATGCTTGTAAAATCCTAGAACCATTGCTATGTAAGTCTTACGCAGGATGAAAAAAATCTTTTTTTGAGGCTCAGAAATTTATTTTGAGCATTCGGTGCAAGATCCTTGTAAAATAGAGTAGGAACACAAGCGAATTAAAGCTTTTAGCGATCGCA # Right flank : CTAAAGACGCGGCAGACAGGTATTTCTTAAGCTTTGTAATAGAAATTAATCCAGTTAAGCTACCAGAAAACACCGAATCAGTAGGTATAGACTTAGGAATACTCGACTTTGCCACACTCAGCAATGGGGAGAAAATAAAAGCACCAAAACCACTAAAAGCAAGATTAAAGAGACTGAAAAAGCTTCAAAGGAAGTTAAGCAAGAAACAAAAAGGAAGTAACAGAAGAGAGCGCGCGAGGAAAAAAGTAGCTAGACTACACGCCAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCCCAACCTTAGATGCCATAAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.70,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0 Confidence: HIGH] # Array family : NA // Array 1 26392-24533 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALVY01000215.1 Gloeocapsa sp. PCC 73106 scaffold_00215, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 26391 37 100.0 36 ..................................... GTCTAGGGCTTTTTTCTTTGGAAACTTTATCTGCAA 26318 37 100.0 36 ..................................... ACAAAGGAACGTTTTCCATGCTCATGTACGGGAGAG 26245 37 100.0 37 ..................................... TACGTTCTGGCAGCGATCATCCCAGAACCACCTTGCG 26171 37 100.0 38 ..................................... ATAAAGGTTGATGATGGGGTAAGAAAATTTACCCGTAA 26096 37 100.0 36 ..................................... TTCCCCAAATCCAATCTATTCTCGTACGCTCTCCCG 26023 37 100.0 36 ..................................... AAGAAGTCGCCCACCGGGATAGAAAAAGATTGCCAG 25950 37 100.0 37 ..................................... CGTTTTCATCCCACATTGGAGACTTGAACCTCAATCT 25876 37 100.0 37 ..................................... ACTGGAGTACTGCTATCATACATGCCTTCCATTAGTG 25802 37 100.0 38 ..................................... ATTGGATTTACTGACTATAAACCTCCTTTCATGCTAAG 25727 37 100.0 33 ..................................... CCTCCATAACATGACAACGGGTACAGTTTATCT 25657 37 100.0 38 ..................................... TTAAATATTCCCCAATGCGCCACGAGAAATCTGACTGA 25582 37 100.0 36 ..................................... TGTGTATGCGGACTTTGACCGACCCTACTAACACCA 25509 37 100.0 35 ..................................... AAACCCTAGTGCTTGACCACAACGCATCCCCAGGA 25437 37 100.0 36 ..................................... ATCTACATAGGCTTGATAGTGACTAGCGATTAATTT 25364 37 100.0 35 ..................................... TGGGAATTGATTAGGTTTAATAGCAAGGTGTTACG 25292 37 100.0 39 ..................................... CTTCCTTGAGCCAATCGAGCGGTAACGTTTTTGCCGTTA 25216 37 100.0 36 ..................................... CACTTCTAGGCTTAACTTAAGCTCTAGGAGCGCGCT 25143 37 100.0 34 ..................................... AGCTCTACTAAGGCGATCGCTATCTCCCTAGGAA 25072 37 100.0 35 ..................................... TTTCCATTTTCGGGGATAAATACCACCATCTTGGT 25000 37 100.0 32 ..................................... TAGCACTTCAAATCCCTGAAGCTAGTTTGGGG 24931 37 100.0 36 ..................................... TATTATTCCTGAGAAGCTAGATGAAGCGATTGGATT 24858 37 100.0 33 ..................................... GATACTTTAAACGCTAACTCTGATTCTCTAGAT 24788 37 100.0 35 ..................................... ACGATACCCTGTGCACATTCAATTTTTTTCGAGTA 24716 37 100.0 37 ..................................... GTACAGCTATTGCGGGAATAGGAGTTAAAGAGCTGGG 24642 37 100.0 36 ..................................... AATTTAGGAGATAGAGTAGCGATCGCTTTGGGAAAC 24569 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================= ================== 26 37 100.0 36 GTTTCCTATTAATGAATCCTAGAAATGGGATTGAAAC # Left flank : CTCATCATTTACGATTTACCCGCTACTAAACCAGGTAATAAACGTCGTAAGCGACTTCATGATATGCTCTCTGGTTACGGCGCATGGACTCAATTTAGTGCATTTGAGTGCTTCTTAACAGCGATCCAATTTGCTCAACTTCACTCAAAACTTGAACTTTTGATTAAACCAACAGAGGACTCTGTCAGAATCTATATATTGGATGCGATCTCAGTTCGTAAAACCCTCACCTATGGCTCGAAAAAACCTGAACAGACAGACACACTTATTTTATGATTTATTCCTTCACCAAGCATATACGCTATAATTTTTCTGACAGCTCAAAGCCCAGACAAAATTCTTAGTGTCCCGTCAAAACTCTAGAACCTTGATAATTAAATAGCTCTAGCTGTTTATGTGGTAAATAATTACTGAGGGCTTTCGCTTAAAATCCTAATTTTTGGCGATCTCGTCAGAATTGATGCTGAAACCCTTATCAGAATGACTTTATCACTGTCACC # Right flank : AGGAAAAAATTCGGCATTTATAGCAAAAACTAGTTAATCCGGATCATCTTGGTTATAATAATAAACCATGAGGGTTCATACCTTTGTGTTTTGTTTACGATTTACCCTCGCTTAATATGCGGGGCTTTTTTATGCAAAAACACGACTTCTTGCGTATTATAAGAGATAGTGTTTTTAAATTAGGAATAATTACGCTACTTTTTGGTGCTGCACTTTTTCATGGAAAGAACACATCAAATACCGAAGTAACTCGCATTTTTGCCGCTGCTTTGAATATTCTGGGTTTCCTATTAATGAATCCTAGAAATGGGATTGAAAAGATAGAGTAAATGCGCCGATTTGCCGTACTAAGAGATTTTGAGTAATAGCAAAAAAAAACCCGGTCATTTCCGGGCTGCAGCGAATAAAAGCAAAGACAGTTAATTGGTGTGTCAATACTATTGATCAATTTCACAGGTTAAAGGACAAGCTGCATAAACAGAAGTATGAAGAGGTCTCGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCTATTAATGAATCCTAGAAATGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.20,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : NA //