Array 1 42890-43337 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVOX01000028.1 Gallibacterium anatis 12656/12 strain 12656-12 Liver contig000027, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 42890 28 100.0 32 ............................ GGGCATAAGTCTAAAAATGCACGGCGTTTAGC 42950 28 100.0 32 ............................ ATTGCCGAAAATCAGGCAATGCCGGATAGATT 43010 28 100.0 32 ............................ GTGATAATTACGGGATTAAAGTTGGGGATATT 43070 28 100.0 32 ............................ AGATTCATAAAACAAAATTACAAAATTATTTA 43130 28 100.0 32 ............................ GTACTGAAACAAAAAGAAAATTTCTCCGTCGC 43190 28 100.0 32 ............................ TTTCTCGCTTCCCTAAATTCATTTCGCTTTGT 43250 28 100.0 33 ............................ TTGCGTGTTGTTTTGATGTAGATAGTCTGTACT 43311 27 78.6 0 ..............-..A.AT..TA... | ========== ====== ====== ====== ============================ ================================= ================== 8 28 97.3 32 CTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : CTGCTTTTACTCAAAATTGATGCTTTAAAAAATTACTTTATTATCAATGAAATAGCTCCTATCCCTGAAAAAACAACAGCTGTCCGTTACCAACGGATACAACATAAAGGGAAAAGTGCTTTACGCCGTGCAGAAAAACGTATGAAACACAGAAAAGAATTTTCAGCTGAAATTTTAGAAAAAATGGAGGCTAAACAAGCGCAAATCAAACGTTACCCACATATTTTCTTAAAAAGCAGCAGCACTCATCAAGCAAAAATGTTACTGGAAATAAGGCAAATAATCTGTTCTAAGCCTAATGAGGGGCAATTTACGGGATATGGTTTAAGTCAAGCTGCATCAGCCACTGTTCCTCACTTTTAATCAATAACCCTTTTTTGGAGATACTAAAAAATCTATCAAAATATCAATAGGTTATAAAACACATCTAAAAAAGGGTTTTTATCTTAAAATGTTCTTTAACAATTGACTATCCTTATATCATAAGGTATTTGTGTCTA # Right flank : ATACAATTATTTGATTAAATCAGGTTTAAATAGGATTTAAACAATATTTAAATCCTATTGTTCATCTTTTTTACACCAAAATCCCAAAAATTCATTAAACTTCCACTCTGTTTCAGTTTGCCCTTTCTGCGGCAATGAAACGGTTGCATAATGCAATGCAACTATTTCAAGTTTATCATTATTCAATGCATCTGCTAATTCATCCAACACCGTACTCAAGGAAGAAACAAGCCAAGGCTTAATTCGGGGATTGGTTGTTTTTATCGGTTGATAACAAAAACGATGCCGCTCTTTTACACAAGAAAAAAGATCTTGGTAAGCTTTATCACTATATGCAAACGCATAATGCCAATCGCTTTCCTTGTCCGGCAAGCAAACAAAGTCTTCCATAGGCTGTTTTGAATGACGAAAAGGTACTACAAGTGAACAATGAGAAGTCAATTTCGCATTTTCTGTACGCCAATAACCATTGATATAATTTGTCTTTTCGTTATGGAACA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 18441-18874 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVOX01000051.1 Gallibacterium anatis 12656/12 strain 12656-12 Liver contig000049, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 18441 33 100.0 34 ................................. TGGGTATCCGCCTGCACAATTTAGGTTTGAATTA 18508 33 100.0 33 ................................. ATTGATTGGATCGCTGCACGCTGCCCGGTGCAT 18574 33 100.0 35 ................................. ATCCGCACTAGGTGCTGATGTGAAAGTCAAGAGGT 18642 33 100.0 32 ................................. ACAAAAAAGCATATATACTAAAGTAAAAAAAT 18707 33 100.0 36 ................................. TACCGTTTTTGTGCCGTTTGCGGTTACGTGCGATCA 18776 33 97.0 33 A................................ TTTTGCAAGTTTGGCAACCTCTTTAACCACCGC 18842 33 90.9 0 ............................T..GT | ========== ====== ====== ====== ================================= ==================================== ================== 7 33 98.3 34 TCGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Left flank : GCGTTAGGAGAACATTATGTTGATGCTGATTACTTATGACATCTCTTTTGATGATCCGCAAGGACAAAAAAGATTACGACAAATAGCAAAGCTTTGCTTAGATTATGGGGTGCGCGTACAATATTCCGTCTTTGAATGTGATATTACTCCAGATCAATAGGTTAAACTAAAAACGAAATTATTGGACATTTATCAACCGGAATGTGACAGTTTACGTTTTTACCATCTCGGTAGTAAATGGCGCAAAAAAGTTGAACATCATGGTGCTAAACCGGCATTTGATATTTTCCAAGATACAATTATTTTGTGATCGCCAACCTATAGTTCTCATTAAAATAGTGTAAGGTTAGCGATTTATCATTGTTCTTTAAAAATCAATAAGTTAATAATTTAATACATCCTATTTTATTTTATGATATACTCGTCCACCGCATATAAATAAAGATATTAGCGAAATAGGGGAAGTAAGCCTTTATTTTTGTTAATGTTTTAGTATATGC # Right flank : TCAATACCAAATCATCTCTGTTGGCATACATCTCTTTTCAACAATTAAGATCCACTAAAAATGTCAGCATTAATCATTACCTAACACATTTAAAAAATCCGCTACTGTGTGGAATGAGCCAAAAATCAACAACAGATCCTCTTTTTGTGTCTTATTTAAAGCAATATCTACACCCTGTAACATTGAATTAACCGCCTGACTTTCCAATAAATTATGATTTTTTTCTGTCACTAACTGTAACTTCCGTTGTAATTCAATAGCACTTTGTCCTCTTTCGCCAGCCAAAGGAACACAAATCCACGCTGTAATAAAAGGTAACAATGGTGTTAATACACCTATGGCATCTTTATCCTGCAAAATACCGCAAATAGCATAAATATGACGATAATTTGCTTTCTTCTGTGCTAATTGTGTTGCTAAATAACGTGCCGCGTGTGGATTATGTCCAACATCCAGCACAATTTGCGGTAAATTTTTGCCTTCTACATTAAATCGTTGAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:0, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCGGTCGCCTCACGCGCGACCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.90,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : NA // Array 1 20584-21609 **** Predicted by CRISPRDetect 2.4 *** >NZ_AVOX01000061.1 Gallibacterium anatis 12656/12 strain 12656-12 Liver contig000059a, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 20584 36 100.0 34 .................................... TTGGTCGTTATTGATAATTACATATTTCATAGAT 20654 36 100.0 37 .................................... AGGTTTCGACCGGAGTCCATTAGTTGCATCGGTTTCA 20727 36 100.0 35 .................................... TCCCTCTTAATCGCTTTGTTGCCTTTCGATGGTTG 20798 36 100.0 34 .................................... TAAGCCGTTCCCTTTGACTTGTCAATAAATTTTT 20868 36 100.0 34 .................................... TATCCTGCGGGCGGCGTCCTCCTCGTCTTCCTCA 20938 36 100.0 36 .................................... GGTGTGTGGTTTTGTTAGATTTCACCTCTATTCCAA 21010 36 100.0 34 .................................... GGTAATGAAAGCACCCATTGTTAAAATATGGTGC 21080 36 100.0 34 .................................... CTGATACCTTGCGTCCTAATGATCCAAAGCCATT 21150 36 100.0 35 .................................... ACGGCATTTAATTCAATACTGGCAATAGTATCTAA 21221 36 100.0 32 .................................... ATCTGATTAGTGGTTACTGATAACTAAAGCAC 21289 36 100.0 34 .................................... TCTTCTATGACGTTGAAGACGGTCGAGCCTTGGT 21359 36 100.0 38 .................................... TGTATTGTCTAACGACTTACTAGCACTTATATAATTAC 21433 36 100.0 35 .................................... AGGAATTGCTTTAATAGATTTAGTCTAGCTTCTGA 21504 36 100.0 34 .................................... CTTGCACGTTTTCTGATCTCGTCTGCACTAGGTG 21574 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 15 36 100.0 35 GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Left flank : AGAGGTTGCAAGATTGATTAAACAGGTGGATGACAGTGATGATTACCATATTGCATTGGAAAGTTTCTTTTTAAATCAACTTAGTATGTTGGCACCGGAGGAATAAAATGAAACAGTTCGTCATTGGTTATGACATTACAGATCCTAAACGGCTACAAAAGGTTTATAAACAAATGCAACATTTTGCGATTCCGTTACAATATAGTATTTTCTTGTTTGAAGGAACAAAGGAGCAGTTGCAGAAAGCTATTGCGCCAGTGATTGAAACAATTAATAATAAAAAGGACGACTTAAGAATTTATGAATTACCGAGTTATGGATTAAAAGAGCGAATCGGAAAAACAGTTTTGCCGGAGGGCATTGTGTTAACGGCGCTACCAACTAGACTATAATTTTGCTTAAATAATAATCATATTGGAGGTTAACTATGCAGTCATTTATACTTTTTGGCAAAGCCACTTTTAATTTATTGATTACTAATGTATTTTACGGTGTCGGGA # Right flank : TTGTCTAAAGCGGTAATATCATTTAGCTCTCTGTTGTTCTAACCTAGCCCTGTTCTAAAAGGGATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTAACCTAGCCCTGTTCTAAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.00,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //