Array 1 136486-129065 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFQJ010000182.1 Xanthomonas melonis strain CaNP5B contig00008, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 136485 28 100.0 32 ............................ TGGTCATCCGGGCGCAGCGTCGGGAATCCTCC 136425 28 100.0 32 ............................ TTGGCGATTGCGCCGGTGATCGGGTCGTACTC 136365 28 100.0 32 ............................ TTGTTGGTCCAGGCAGAGACGCCGATCGGCGA 136305 28 100.0 32 ............................ TCAGTGAAGCGGCAACAGCGGAAAATCAGCTC 136245 28 100.0 32 ............................ TGGAAGGCCAGAAGCTGCGGCTGATCGACTTG 136185 28 100.0 32 ............................ GCCACCTGGGCGTCCTGCAGCGTGCCGCCGTC 136125 28 100.0 32 ............................ TTCGGCATCCTGCAGGTCCAGTCGTACACCGA 136065 28 100.0 32 ............................ ACCAACGCCATGGCGCAGTCCCACGCAATCGG 136005 28 100.0 32 ............................ TTGGCCAACGGGCTGGCGGGATCTGGATACGG 135945 28 100.0 32 ............................ TGGACGAAGACCCGGATTTACGAGAACGCGAA 135885 28 100.0 32 ............................ TTCTGGCCGTAGGTCCGGCCCTTCCTCTTCTC 135825 28 100.0 32 ............................ ACCCGGAAGAAGCGCAGCCGGTCCAAGATCAT 135765 28 100.0 32 ............................ AGCAGGCGCAGCGCAGCCCGCGCATCAGCGCA 135705 28 100.0 32 ............................ TGGACGAAGACCCGGATTTACGAGAACGCGAA 135645 28 100.0 32 ............................ TGGTCGATGACGGGTTCCAGCTGCGGCACGAC 135585 28 100.0 32 ............................ TACCAGGGCAATCGCAAGGATGAAACCGATAA 135525 28 100.0 32 ............................ AGCAACGCGTGTGCTGCGCCTAACGAATTTGT 135465 28 100.0 33 ............................ CAAGGGTGCAACGGTGGTCGTCATTAATGACGC 135404 28 100.0 32 ............................ GTTCGCGGTCTCGCTGTCGCTATCAGTGCCAT 135344 28 100.0 32 ............................ AGACTCATCGCGGACGACATCACATGATCCGG 135284 28 100.0 32 ............................ TGCCGAAGAAATGATGGCGCTGCGTGCCGACA 135224 28 100.0 32 ............................ ACGTGGCCCAGCGGCCTATTGAATTGGAGTTC 135164 28 100.0 32 ............................ AATACGAACCTGTCGCGATGAACTTCGGCGTG 135104 28 100.0 32 ............................ GTGTGGTCGTCCATCGGCGTCATGCCGGCATA 135044 28 100.0 32 ............................ GATCCACCAGGTGGCCGCCCAGTAGCTCAACG 134984 28 100.0 32 ............................ AGTGGCCTGCCCTTGCCGTCAACCATCGGAAA 134924 28 100.0 33 ............................ CTGCTTGATGAAGGTCGGGAAGTAATCGAGTCG 134863 28 100.0 32 ............................ TCAGCCACAACGAAAGCGGCCGTCCGGAATAT 134803 28 100.0 32 ............................ AAGCACTTCCGGCGTATCGCTGGTGAGATTCT 134743 28 100.0 32 ............................ ATGAATCCGAGTTGCGTCGCGCCAGTCGTGTG 134683 28 100.0 32 ............................ AAAGACATCGGCCAGGGAAGCAATTCCCCGGC 134623 28 100.0 32 ............................ TCCCCGCGCTTTTCCTTCACTTTGTGCATGTA 134563 28 100.0 32 ............................ AATCAGTAGCGTGCCCACAGCTCCCATCGCTC 134503 28 100.0 32 ............................ ATCAACGAGTGGGCCGCATCGCTCGCTGCGAT 134443 28 100.0 32 ............................ AGGGGAAGAGGGAGCGCTGTCGGCGCATGCAG 134383 28 100.0 32 ............................ TACGGAAAAATGGCGCGTTGGCTGCGAACGCA 134323 28 100.0 32 ............................ GGCCCTTGCCCTGCCATCATGATGAACTCGCC 134263 28 100.0 32 ............................ TCATAAAATCTTCAGCCGCCAGAGCGTGATTA 134203 28 100.0 32 ............................ TTGTTGCTCTCAAGATAAGTCGTTCCATGTCT 134143 28 100.0 33 ............................ ATATCGTCGCAGCTGAATCGCAGCCGGCATGCT 134082 28 100.0 32 ............................ GCTGGAAGCATGGCGGCGTCTGGTACACAGGC 134022 28 100.0 32 ............................ GGCGTAGACCACCCTGCCCTCATCCTTGAACT 133962 28 100.0 32 ............................ TTCGCCAGTCCGATCAAAGCCCGGTGGTGCCC 133902 28 100.0 32 ............................ AGCGCGTGTTGCCAGTGGCGTCGTGTAGAAAT 133842 28 100.0 32 ............................ TCATGCACAAGGACATCGATCATAAGGGCCGC 133782 28 100.0 32 ............................ ATGCCGCATCGTCGTTGCGGTCCAAATCCGCC 133722 28 100.0 33 ............................ ACCTTCCAGCGCCTGCACGCGCGCGATCAGTGC 133661 28 100.0 32 ............................ CCGTCGCAGGATGCGAGCGGCCGGGTGTCCGT 133601 28 100.0 32 ............................ TTCTGGGGCGCCAGCAGGCAACGCCACAACCG 133541 28 100.0 32 ............................ CTCACCGATGCGCCGCTGAACCGTTCGACCGC 133481 28 100.0 32 ............................ TGCCTGGTATGTCAGCAGACCCTGGACAGTCA 133421 28 100.0 33 ............................ CTGGAAGTGCGCCAAGCCGCCGATGATTGCCAG 133360 28 100.0 32 ............................ CTGGCCCGCGTAGGCGGTGCCGCAAGCATGAA 133300 28 100.0 32 ............................ AGCCGTCATACGTACAGGGAAGCGATGAGCTG 133240 28 100.0 32 ............................ AATGCGTGTCAGCGCGCTTTCCACTCGGGTGA 133180 28 100.0 32 ............................ TGCACAAGGACATCGATCATAAGGGCCGCGTT 133120 28 100.0 32 ............................ AATGGCAGCACGCCATGCCGCATCGTCGTTGC 133060 28 100.0 33 ............................ ACTGGAGGACAGGCCCCAAACGCCATGTTCGGT 132999 28 100.0 32 ............................ TTCCAGTCCGGAACGTCGTCTTCGTCTTCATC 132939 28 100.0 32 ............................ ATCCTCGGAAACCTCGATCCAGCCCACCGACT 132879 28 100.0 33 ............................ CTACAACCCGTTTGATGCGGGTCGCGTGGAAGT 132818 28 100.0 32 ............................ AAGCGCAACGGCGGCAACCTGCCGAACGTTTC 132758 28 100.0 32 ............................ CCCCGCAGAGTCCCCGGCTGCGGGAATGCTCA 132698 28 100.0 32 ............................ TTGTCTGGTGCGAACATGAGGACTATCCGTTC 132638 28 100.0 32 ............................ TGGGGGAACCATGGGTTGTGCCGCCAGTTGAT 132578 28 100.0 32 ............................ TGGCGAGGTGCGCGTGCTCTACATGCCGGAGC 132518 28 100.0 32 ............................ TTGAACGGACTGTGCGCGCGGAGGTGGCCGGG 132458 28 100.0 32 ............................ ATGAGCGGCGTGTGCGAGGTCCACAGGCTGGC 132398 28 100.0 32 ............................ ATCCGGAACCTGCTGTTCCACCTGCTGGCGGG 132338 28 100.0 33 ............................ TTCAGGCGCCACGCCGCAGCAACCGAATGTCGT 132277 28 100.0 32 ............................ TGGATGAGTGGGGCCAGCCAGAGTGCGACATT 132217 28 100.0 32 ............................ TTGGCGATCTCCTGCAGCACCGCTGGTGGCAC 132157 28 100.0 31 ............................ ACGACCAGGTTGATTGCGTCGTCGCGGTCGA 132098 28 100.0 32 ............................ TCCAGTGGCGACCTGTACGCGGTCGATTGGTG 132038 28 100.0 32 ............................ CGTGGCAGCAGCTCCCGCTCTCTCGCAGACAG 131978 28 100.0 32 ............................ TTGAAGAAATTGAGCGCGAGGCCGAGGCGGTG 131918 28 100.0 32 ............................ AAGAAATCGAAGCTTTCTTCATGAGTTTTATC 131858 28 100.0 32 ............................ TTTATCACCGCGCCGATGTCAGCCTGCAGCGA 131798 28 100.0 32 ............................ GTCTGCTCGGCGTCGGCGAAGTCCTCATCCGT 131738 28 100.0 32 ............................ GCGTCGACGAGATCGACTTGGCCGCCATGGGA 131678 28 100.0 32 ............................ TGGAAGCGCAGCGCGAGAAGATCCGTCAGGAG 131618 28 100.0 32 ............................ AAAGTGCGCCACGAACGCATCGACTATCTGCT 131558 28 100.0 32 ............................ TGCGGCACACCTGGGCAAGCTGGCACGTGATG 131498 28 100.0 32 ............................ TGTTGGACGAGAACTGGTCGACGCTGAAGGAC 131438 28 100.0 33 ............................ TGCGCAAAGCCGTTGCGGTCTTCAGTTTCGAAA 131377 28 100.0 32 ............................ GCCGAATTGCTGGTTCCGCTGCAGCGCAGTGG 131317 28 100.0 32 ............................ TTCCGGAATTTCAGGTCGGCAGGCGCGGCTGG 131257 28 100.0 32 ............................ ACGCGTGGCCGCGCCCACGTACGGAGCGGCCC 131197 28 100.0 32 ............................ ACGCCGCAGCAGTTCGGCAATGCGCTGAACTA 131137 28 100.0 32 ............................ TTGCCGAGCGGTCCCAGGTCGATCTCCAGCGG 131077 28 100.0 33 ............................ AGCCGGCGGCGCCCATGCCGGCACCTCTTCCAC 131016 28 100.0 32 ............................ TCGCGTGGTCGCCGCTCGGCTGGCGCTGCAAG 130956 28 100.0 32 ............................ TGGCCGACACCGCCGACGCTCGCGAACGAAGC 130896 28 100.0 32 ............................ GAAGTACGCCATGGGCGAAGAGGGTGCATTGC 130836 28 100.0 32 ............................ TGGTGGAGGAAGGCGACTTCTACCGCCGCGAC 130776 28 100.0 32 ............................ GCGACCGGTGCCATCCTCGCTTGCATCGAAGC 130716 28 100.0 32 ............................ TTGTTGAAGTGGCCACCCTTAGACTCGGCCGC 130656 28 100.0 32 ............................ GTCACCAAGGGCAAATACATCCAGGCCGTTCT 130596 28 100.0 32 ............................ TTGTAGCGATTACTTACCGTGTAAGTGTACGC 130536 28 100.0 32 ............................ GAAAGTCGCCCGCGCCCTGTCCGATCCGGGTA 130476 28 100.0 32 ............................ ATCCCGGCAACCGCAGCATGTGCTGCACGCTC 130416 28 100.0 34 ............................ CTCGCGGCCGTCGATCAGCGTCAACATGCGTTCA 130354 28 100.0 32 ............................ AGGCAGAGGCGAAGGGTGCTGGCTGGAAGGCA 130294 28 100.0 32 ............................ TTGCGGGTACGGAAATCAGTCATGAGATACTC 130234 28 100.0 32 ............................ CGCGAATCACTGAAATTGTAGGGTCCATTGCC 130174 28 100.0 32 ............................ ATCGTGACCGTAACGAACCAGGGCGCAGGCTA 130114 28 96.4 32 T........................... AACGGGGCGGCCGGATGACTACGTGGATCTGG 130054 28 100.0 32 ............................ CAGCGAGTCGGTGCCGGGGCACGCGGAATAGC 129994 28 100.0 32 ............................ AAGCGGCGCGCAGAGCGCCGTGCAGCACATCT 129934 28 100.0 32 ............................ ATCGCTAACGACCGCTTCCGGCATCAAGTCCA 129874 28 100.0 32 ............................ GCGTGGCCGGCAAGCGCGCCAATGAGCGCGAA 129814 28 100.0 32 ............................ ACGCGCCAGGCTGAAGTGCTGGCCGATTATAG 129754 28 100.0 32 ............................ ATTCTGGGCGGCGTCATTGCGCTGCTGACCGG 129694 28 100.0 32 ............................ TGCGCGCAGTGATCGCGTCGATCGCTTATCGC 129634 28 100.0 32 ............................ TGGATGTTATGCCATGCGTGCAGCCCCCCTTT 129574 28 100.0 32 ............................ CCCACCGGCTGGCATGGCGGGGCGGTGTAGAG 129514 28 100.0 33 ............................ AGCTGGGCTTCACCACGCTCATCTGCATCCTGT 129453 28 100.0 33 ............................ CGGCAGCGGTGCGTCATCCGGCCATTCCTCGAC 129392 28 100.0 32 ............................ TCTTGCCATCGCGAATGTCCAGCCCCGAGGCG 129332 28 100.0 32 ............................ GATGGCGCGGCGGTGCGGGGCGAGCAGGTCCA 129272 28 100.0 32 ............................ TCTACAGGCTGCGCGATCAGCGTCGGTGCCTG 129212 28 100.0 32 ............................ AATCATCGGGCGCAGGCTCCACCCCGGCCAGG 129152 28 100.0 32 ............................ TTGCACTGTTCCGACCAGCCCAGGCGGTAGGT 129092 28 96.4 0 ...........................C | ========== ====== ====== ====== ============================ ================================== ================== 124 28 99.9 32 GTTCACTGCCGCGTAGGCAGCTCAGAAA # Left flank : CATTGCAGACATTGATGGCCCCGCCCTGGCTGCAAGGCATGCAGGATCATTTGACTGTATCGGACATCTACCCCACCCCCGCTGGCGTGCAGCATCGGCGAGTGATGCGGGTACAGGCCAAGAGCAGCCCATCACGCCTACGCCGCAGGGCGATGCGACGCCACGGACTGGATGCAGAAGCGGCGCTGCAACGCATCCCGGATTCGGCCTCCGAACGATTGCAGCTGCCCTTCGTGGTTCTGGGTAGCCGCAGCACAGGGCAACCCTCGTTCCCGCTCTTCATTCGCCAGGGTCCATTGTCGTCCACTCCAGTGCCGGGCACCTTCAACAGCTACGGCCTGAGCCAGGACGCAACCGTTCCCTGGTTCTGACCCTTTTTTCCTGCGCAGAACACAGCTCTTAAGAATCAACAACTTGGCGGGCCTCCCAAGATAAGGGGGCCCGTTTCTTTTTTGGGGATCTTCCCAGTACCATCAACAGCTTGCGTCATTTTTTGTCTT # Right flank : TGCGGGTTGTCGACTTTGCTGTCGCCGCCGATTCAAGTCTGCCCCATTCCGGTTGGATCGCCGAAGTAAATCTGACCCTCCCGGGTTCAATCGCCTGGGCATACCTGCGGTGTCGCATGGCACTGTCGATGCAGTGCATACCGGCTGCGCAACTGCGGCGTGCGATGCGGCACTACAGGCAGACGATGGGTCGTGCTGCGGCGCTGCCGAATACCCATCACTCGCGTCCGTAAACCCCCAGGAACATCGCCACCGCCGATTCGGCCACCTGTGCCTGTTGCTCGGCCGACAAGGGGGGCTGGCCGAAGGCCAGCTGCGGCCAGAATGCGAATCCCTTGATCAGCGATTGCAGCTGTTGCGAGGCGAATTCCGCGTCCATCGGCGCCAGGCGGCCGTCGGCCATTGCCGCGCGCAGCCAGGTGGTGGTGCCTTCTTCCTTGCTGCCCAGTTGCGACAGCAGTGCGCGCGCGCGTTCGGGCGAGTGGATGCCTTCGGCGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //