Array 1 15316-15021 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDQG01000029.1 Halalkalicoccus subterraneus strain GSM28 scaffold29, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 15315 30 100.0 37 .............................. ATCGTCTTCTACGCCCTGCCTGCGATTTATGGCATCG 15248 30 100.0 38 .............................. CACCAGGCTTTGAGTTTCCCGGCTTTCTGTCGACGCCG 15180 30 100.0 35 .............................. TGGCGTCCAGCGAGTCCGCATGGAGGTGAGCCTCG 15115 30 100.0 35 .............................. ATGATGGAACTCCGGGATCAATTCATCGAGGAGGT 15050 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ====================================== ================== 5 30 99.3 36 GTTCCAGACGAACCCTTGTGGGGTTGAAGC # Left flank : ACGGGCTATATGTCCGTCTCCGGTATGGCGCACTTCACGCCATTCGCTCGTTGACTTTACGAGCGTTAGCCCACCCGCCGTTAAGCGTCGCATGGACGCCCCTATGCTTGGATGCATGGACGAGGAACAATTGTCCACGGGGCTCCGCTACGATAGGCGAGAAGAGGCGCATAGACAGCGCCCGGCTCAAGATAGTAGCATACTTACAATGGTTGCGACACTGGCGACCGTCATATCGCCTACGAGGTCGCGGAAATTATAGTCCATGAGCCTGCCGCCAGCGTTTGGCTTAAACACGCAGGAGGAGCGAACCCGTCACGCCAAGAGTGGGTATCCCACTGCATTACAGGGCTGTACTCCAACGGCCCGAAAAGCAGAAAAAGAAATCCATTCATACTCTATTCCATCGACCCCCGGGGGTTGAGCGGTTATTGAAGGTTGACGGAAACACTACGTTCAATCCATCCGTTTCAAGGGCTGTATGCCTGATTTCGGGCATG # Right flank : CGGTTGTCTTAGTCGTCGGTAATAATTACAGACGAACCCTTAGTTAGTTCATATCGATGCTGCGGAGACGTTCACGCCGATTCACGTATTGGACACCACGTTACTCTCTCATGGGTTGCTACGTCGCTCCGTGTCCGTTCTATGGCGTCTAACAGGCCTGTCAATGGATGGTTGTACAAGTAATGTCTCTCCCATCATGTGTGACTAACGGCGCTCTGCGACCAACGGTCGGTTCATGAGGCGTACGTTTCGAGTACTCGACTTTTTCGTTCGCACGGGGGGACTACCCACTCTCGAGCCACACACAACATTTTCATCCAGCTTTTTGCTCGACTCCGTCGTTTGGAACGTCCTGGTGAATATCACAGAAGATAATATCCCCGTCTCGGATTACACCATCATGACCCTCTCTCTGGATGCTCTTGAATCGCATCTGTTCAAGTGCGCCGACATTATTAGAGACGCGGTTGACCCAACCGACTACAAGGACTACATTCTGC # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCCAGACGAACCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-6.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 113141-113502 **** Predicted by CRISPRDetect 2.4 *** >NZ_RDQG01000078.1 Halalkalicoccus subterraneus strain GSM28 scaffold78, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 113141 31 100.0 37 ............................... ACGGTGTGTGTTGCACGAGCGTTAACCGACCGCCGGG 113209 31 100.0 35 ............................... TTTTCCGCCGGGCGTTCATGGGCCACGACGCAACT 113275 31 100.0 35 ............................... CCCGTGCTCATGGGGGTTCGACACCGACGACCTAG 113341 31 100.0 34 ............................... ACGGACGGAGAGAGCACCAACACCGACGCGCCGA 113406 30 90.3 36 ............-....A..T.......... AGGCTCTCCAATTTCCGGGCCGGAAACGTACTCATG 113472 31 96.8 0 ...............T............... | ========== ====== ====== ====== =============================== ===================================== ================== 6 31 97.9 36 CTTTCAGACGAACCCCTTGTGGGGTTGAAGC # Left flank : CTCTGAAGGCGTTGATAGCGACTGAATGGTAGACAACCTTGTGCAACTCTGGCCGTGTCAAGAGGATTCGTTGCACAAGGCTGTATCTGATCACACCGTGGTGTGATATGCTCGCGAAGCCAGAATCAGAGAACCCGTTTCTACTCCCTCTACTACTACTTATTCAGGAGGAGGCTGCTCGGAGTTGCAACTAGGAACGGAGGGCGTACCCGGGATGGTTGTCGAAAGCTATGCGTCGTCTTCTTGGCTCGTTGTTAGGACATCACGTTTCCTGCAGGGGGTTGCTCGAGATCCCGATCACAACGATCGTGATAGCGGTCGGCCGCATTCTCGTCGACCACAACGAGCTTCTTGCCACGCCGTTTCGTCTGCTCGACGTCGTCTTTGCCCAGTTTCTCGAGGAAGTTCATGACACGGGCCACAGTTTGGGTGTGGGGCTTCGAGCCTTCAGCGGCGGTGATGACCTTCTTGATCGTCTGGCTATCGAGCACGAGTCCAGC # Right flank : CGATGTCACAGACGGGGGAGAGATACTACGGATCCGATCACGATACGTCGAGCCACGAATCGTATTGACTACAGTATCGACGCCGGCATCACTAATAGCATAGCGACTATAGACCGTGAGCCTCCACAGAGATATCATCAGTACCGGCGTGGCTGCATCGCGGTAATAGGGGCGAGTACGAGTTCATGAGCCATGTACTGATGGGCGAGGAATTCGGCAATTTCCCGCGATGTTGGTCCAGCAGTTAGACTAAGGTCAACCTCTTTGCCATCGATAAGTGCCGGTTTTGCTCTGGTCGTCCATGCATTCTCATACTGCTGAGTGCAGACGACAAGCTGACGAGTCGTATCGTTGCACCACACTGTCTGAGTAGGGGTGCGCTCAACGCGCTGCCACTCGCCTAATTCTTCGTCCTTGGATTCGTCGCGGTGCGGAAGAATCCATCCGAGTACACGACTCATCACATCCTGGCCAGGAATTGGTATAGAGTTGAGTAAGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAGACGAACCCCTTGTGGGGTTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTTCAGACGAACCCTTGTGGGGTTGAAGC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //