Array 1 263871-264503 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG657556.1 Holdemania filiformis DSM 12042 Scfld5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 263871 32 100.0 34 ................................ GGCCGCAGGGGGGATTGATTATGTTAATTGAGGG 263937 32 100.0 34 ................................ CTTGGTCAACGCGTTTATCCAGAATTAGAAAATC 264003 32 100.0 34 ................................ AAATATTATTGTTTGCATACGCCTTTGACGATGA 264069 32 100.0 34 ................................ ACTTGCGATCTGGTCATAGATATCGCGCAGGTTC 264135 32 100.0 34 ................................ TTCAAAATCCTTGATCTGAGCGTCAATTCCAAGG 264201 32 100.0 37 ................................ GAATACAACATCGGTGAGATCCGTGTCGCTCAGACGC 264270 32 100.0 36 ................................ CGGCTAAAACTAGGCATTATGCGCACCACCCTTCGG 264338 32 100.0 35 ................................ ATCAGCAAGCAGGAGGACACCTACCGGATGGCCTA 264405 32 100.0 35 ................................ TTGATGATCGTAAAAAAGTCTTGTGGATCAAATCC 264472 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 10 32 100.0 35 GTCGCAAGCTACACGCTTGCGTGGATTGAAAT # Left flank : ATTCAGTCAATGAAGACTGGGTTAATTCTGCGAACGCAATTAATGAAGTTGGGTGTATTCATACGGTTCAGGGTTATGATCTTAACTATGCGGGAGTGATCATTGGTCCGGAGCTGGGGTATGATGAGCAAGCGCAGCAAATTGTAGTTCATGCGGATCAATATTTTGATCGCTTTGGTAAAGCCGCGATTCATGATGAAGAAATTTTGAAGAAATATATTCTTAATATCTATAAGGTTTTACTAACGAGAGCCATTAGGGGAACTTATGTTTACGTCTGTGATCCTGCATTGAGAAATTATTTTAAAACTTGGATAGCTTCTGCGGTTGCGGTGCGAACCTGAAGTGAACATGAAATCCCTGGGAGGTTCGCACCGGGGACTTTGTAAAATTGTTTAGATTATAGTAAAATAGTATGGTAAAAGGGCAGGATTTTTACTAATCTGATGATAGATTCTTTTTAAAGATACATCCAATTAGCATAATGTTACTTTTCTGCA # Right flank : TACTTCTAGTCCTTCGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTGACATGAATAATATTCCTTTAAATAAAACGGTTCAGCTGATGAAAGGGAATAGCAAGCGACAGAAAAAAGTAGTTGATTTCATTAAAAATGCGGATTTAGATATGGATGACTTTGTTTACTTGGACGAAGAACATTTTCGTTGGAATCTGGGAGAATTTGAAAAGGAGAAACCAGAAGAGAAAGCTTTAGATATTCCTGAACAATTCATGGAACAAATAAGACTATGTTCCGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAGCTACACGCTTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCAAGCTACACGCTTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 438024-438715 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG657556.1 Holdemania filiformis DSM 12042 Scfld5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 438024 32 100.0 33 ................................ TTTATTCACACTAATGGTTCGCTCCTTGATAGA 438089 32 100.0 34 ................................ CCAATGTGTTCATTGGCGTGGTAAGCCGGCCAGA 438155 32 100.0 34 ................................ GCTCTTAGTGTTTTATAACCAAGAAGTGGATATT 438221 32 100.0 34 ................................ CGGAACACCCGATTTAAGTGCACCCATTGCGATC 438287 32 100.0 34 ................................ ATACAACTCCGGCCGGGAGGCTGCTCGCGTTACC 438353 32 100.0 34 ................................ GCTCTTAGTGTTTTATAACCAAGAAGTGGATATT 438419 32 100.0 34 ................................ CAGTTAATATCAGTGACATTATTATCCACGATAT 438485 32 100.0 35 ................................ TTTCCAAGCGTCAAATCTAAATTGCAACGGTGTAC 438552 32 93.8 33 ...........T.T.................. ATCGTTATCTTTGTCCATGTTGGCATCTGCAGA 438617 32 90.6 35 ...........T.T.T................ TCCGCGAATGGGGCCAGAAACTACATTTCCATCCT 438684 32 81.2 0 .......A...T.T......A..A.......C | ========== ====== ====== ====== ================================ =================================== ================== 11 32 96.9 34 GTCGCAAGCTACACGCTTGCGTGGATTGAAAT # Left flank : GGGGTTCAGCTGGCTTTTACGACAGAATATGGTAAAATAAAACCCGGAATGGATTTGTACAGGCTGCCGCGGATCCGGGTTACCGGCGGCGCGGGCCTGGACCGGTTCATCAAAAGTATAGAGTAGCAGGAGGGTGATGTTTTATGAGCGAAAAGCGCGACTATTATGAAGTCCTGGGCATCAGCAAAGGCGCTTCCGATGATGAAATAAAAAAAGCCTATCGAAAACTGGCGAAGCAATACCATCCGGATGTGAACAAGGAACCGGGTGCAGAAGAAAAATTTAAAGAAGTCAACGAGGCCTACGAGGTGCTCAGCGACCCGCAGAAACGGGCGACCTATGATCAGTTCGGTCATGCAGGAATGGACGGCATGGGCGCCGGCGGCTTCGGCGGCGGGTTCAGCGGCGGCGGATTTGACGATCTGAACGATATCTTCGGATCGTTCTTCGGCGGCGGCTTTGGCGGNNNNNNNNNNNNNNNNNNNNTCCCTTAATGAAGC # Right flank : CATTATTATTTTGTTGTAGTAGAAAAAGCATGCTTGAGGAGCCGTGCTTTTTTACTGTTGATTGGACGTTTAAGCAAATTTCAAACATTTATTAAGCTCATCTCTTAAATGATTGAATTCCCAAGAAAATTCCAGAATGAAATAAATCTGTGAAAACCTGGGATTTATCCAACTTTTCTTGGATTGCACGGAGGGGAATGGTATAATCAAAAAGGTGATTATACATGTTTCATACTTCCGATTGTAAAAAATTTAAACGATGTCAGAAATATTTCTGGCTCTCTAAAAAAGAACCGACACCGCCATTTTCTCCCTATGTCAGGATGGATGAGGATTTAACGGCGCTGGCCTGCCAGAAATTAGGAATTAAGGAATATTTTCAGGGAGTTCGCGGTGATGATCCGCAGCGGGCTATGGCGGCGCTGGAAGAATCAGAATGGCTGGTTTCCGCCCGCTTTGAATTCCATCAGCTGCGTGTCAAAATTCCCTTTCTCCACAAA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAAGCTACACGCTTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCAAGCTACACGCTTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.80,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 43753-44836 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG657562.1 Holdemania filiformis DSM 12042 Scfld11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 43753 33 100.0 35 ................................. AAGAAAAGCCGGAGCAGATAACAACATTGATGTTA 43821 33 100.0 33 ................................. ACGCACCTGCAACCAGACGGATGCGTCAGTGAT 43887 33 100.0 34 ................................. CTGATATGGACGTAACTCCATAATCAGCTACCCT 43954 33 100.0 33 ................................. TGGTTTAAGCATGTCGAGGTAATCACCAGACAA 44020 33 100.0 34 ................................. CTTTGTATTATAAAACTCCTTATGATGTGCCTGA 44087 33 93.9 36 ...................GC............ ACTCAGAGATCGAGGGTAGCGATAAACGTTACTCTT 44156 33 75.8 33 ...GC.T...T.AC.....GC............ CCCACAGCGTCGTCGGAGTGACAACGTCAAATT 44222 33 81.8 34 ...GC.T...T.AC................... GTCAGAACTATATGAACTAGGAATCGTTTTAACC 44289 32 97.0 13 ..........................-...... CATTATTTACTCC Deletion [44334] 44334 33 69.7 34 T.T.C.TTA.CAT.T.................. AATATTGGGATCTTTACAGTTGCTTCACTATGAA T [44342] 44402 33 93.9 33 ................A......A......... GGCAACATTATCTTGTTTTAAACCGTGTTGTTC 44468 33 97.0 33 ...............G................. GACAGATGCCGCAGGCAAATACTCCGAGATTAC 44534 33 97.0 35 ...........T..................... TCATTGATAAATGCTCTTTCGACAAATGGAATAAT 44602 33 90.9 35 .........TT...A.................. CCTTCCGGCCCAAGTTCAATGGATGTCATCGTTTC 44670 33 93.9 34 ..........A......A............... TTCGAGATTCATCGTGATCCAGATAACTATTCCA 44737 33 90.9 34 A........T.....................G. TTATTACCTATATAGGTCTACGCTATAGGTTCAC 44804 33 87.9 0 .........T..A.......C..T......... | ========== ====== ====== ====== ================================= ==================================== ================== 17 33 92.3 33 GTCATACCGCGCGAGCGGTATGTGGATTGAAAT # Left flank : ATGGTTTATTTCCAGATCGTGCAGCAGTTTGAAAACAATTTGATTTATCCGCGGGTTGTGGGGAATTCCGTAGGTCTTCCGGGGATCTGGGTCTTGTTATCCATCGTAGTATTCGGCGGTCTGTTAGGGTTGTTCGGAATGTTGATCGCAGTTCCGGCAACGGCCGTTCTCTACACCTTGTTAGGCGAATTCGTCAATGGCCGGATGCGGAAAAAGGGACAGATTTTGGATGAATCCGGATTGCTCAGTATGGATTCAATTTCAAGTCCTGAGCAGGACTCTTCATCTTCGAACAAGAATCAATAAGCTTAAGCGCAAGATCTTCAAAGGCCTTGCGTTTTTTGTCCGCTTGGGTGCGAACATGAAGTGAACATAAAAACCCAGGGAGGTTCGCACCGTAAAAATGTGAATATTAAGGAAAATGTTGCAAGTACACTCAAGAATGTTTATGATAAGAGTGAGATAGGAAACATGTGATCTTAATTCAGTTTCTTATCTGC # Right flank : TCTAAGACCTGTATACCTGCTGCCCCACCCGTTCATACCTATCCTTGTACTCACACACTAAAAAACCTGTTCTCTCCCGCCTTAAGCTGAGAAAACAGGCTTTTTTCATTTCACTCTAATCTACATCCTGATCTGTATCATTCCAAGCTCGGATCGTACAACCATCCTGATCCGGCTCCGCAACATAAATCTGAGCCGGATGATCCTGATCACTGACCACGAAAGCAAACTTGATATTCGTACCAACACCCCAGCGCCCTTCCTTATCGACGCAAATTAAGGAAATCGCTTCAGCCCGGCCCCGTTTCCGAATTAACTTTTGCGTGAATTCCGCAACGAGCGATGAAGCCGCTCTCTGAGGATCCTGTCCCTGCTGCAGCCGGCGTACCACCTCATAGCTCAGACACCCTTTCATGATTTCTTCACCCACGCCCGTAGCGGCCGCAGCCCCGATTTCACTATCCGCATAGAAACCACTCCCGCAGACCGGCGAATCGCCC # Questionable array : NO Score: 8.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.61, 5:0, 6:0.25, 7:-0.09, 8:1, 9:0.44, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATACCGCGCGAGCGGTATGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCATACCGCGCGAGCGGTATGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.30,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 88197-87194 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG657562.1 Holdemania filiformis DSM 12042 Scfld11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================== ================== 88196 35 100.0 34 ................................... ATCACTGTCAAGAGATTCAGCCAAAAGCTCAATA 88127 35 100.0 36 ................................... AGGTACTTGCCGGCGGAAGTATGAAACTCAATATCC 88056 35 100.0 33 ................................... TGAGCTCCAGGCGGCCATCCTGGCCACACAAAA 87988 35 100.0 35 ................................... AAAGATGGTGATCAATGCTCTGATATTACAGGTGG 87918 35 100.0 34 ................................... GCTGAGCTTAAACGGCCACAGGGTGGTAAGGTGA 87849 35 100.0 34 ................................... GCCCCCATCCGTCCCGACACCCAACCCATCAAAC 87780 35 100.0 34 ................................... TTAAGCTAGCAATCAGCCCGCTTAGTCCTGGCTC 87711 35 100.0 34 ................................... GGCGCCGTAAAATATTACATTCTTCTGGTATGAG 87642 35 100.0 35 ................................... GCCCTCGGAATACAATTTTTTGAACGTATAAATCC 87572 35 100.0 34 ................................... AACGCGAAAACTTTGGGTTAAGAAAACAAGTTGA 87503 35 100.0 34 ................................... TAATACTCCGGTGACCGCTACTGATGGTAAATAT 87434 35 100.0 34 ................................... TTTCTCGCCGCATAATAATATCGTTTGCCAAGAT 87365 35 100.0 33 ................................... TTCTCCTTCATCTCGCGATCTTTTTATCTCTTT 87297 35 97.1 34 .......T........................... CCACTTTTGGTGTCGAGACAGGTTTCTTTTCATA 87228 35 91.4 0 .....................A...A...A..... | ========== ====== ====== ====== =================================== ==================================== ================== 15 35 99.2 34 GTCGCATCGTTTGCGTACGATGCGTGGATTGAAAT # Left flank : AAGGGGAGATTTAGATGCTTATCCGCCATTTATGTGGAAGTAGAGGCAGTTTATGTTGGTTTTAATTACTTATGATGTGAATACGGAGACGAAAGCGGGGCGGACGCGTCTGCGGAAAGTTGCTAAACAGTGTATTAATTATGGTCAGCGAGTCCAAAACTCAGTTTTTGAATGTTCTTTGGATAATGCAAAATTAATTGAAGTACAGCATTTGTTGGAGGGCTTGATTGATAAAAATGTTGATAGTTTGAGATTTTATATTCTCGGTAATAAATATAAAAATAAAGTAATTCACATAGGGGCAAAGCCAAGCTTTGATGTCAATGATCCACTTATCATTTGAATAATAGTTTAGTGCGAACCTGAAGTAAACATGAAATGCCTGGAGTGTTCGCACTTAAAATCAGGCTAAGTTTAATGAAATATCACAAGTTAGATTAATTGAGTTAATTTAGTTCTTAAATAAGAAACTATATCCTATATTTTGTTTCTTATTTGCG # Right flank : TTCAGAATACAGGGTGCTACTGTTAGATCTATTCAAGTCAAATTGTCAGCACTCACTGTAGGGAACATAACTAAATAAGTGATACCATTTATAAATGTAATGTTGATCAAATCTCGAAGTATACAGGAAGTATGAAACAAATATCTATGAGGTAGAATCTATTGAATATTAAAGATATGATGCGAACCCCCGGATGGCATTTTAAGACTGAATAAACACAGACATCTCCGATCCATTTAGGAATTCCTTGGAAATAGACTCTGATAATTAGTAAACTGTGGTATACTAAAGAAAAAGGAGTGATCCCGATGCAAGCCAAGAATGCCCCGCGCTATCAACAAATCGCAGCGGATATCGCTGCTAAAATTGCCGGCGGCGAATATAAAATAGGAGATAAAATTTTTGCCCGTTCCTCCCTGGCTTCACAATACCACGTTTCCAGTGAAACAGCGCGCCGCGCTATTTGCGTTCTTTGCGATATGAAAATTGTGGAATCAATA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGTTTGCGTACGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.43%AT] # Reference repeat match prediction: R [matched GTCGCATCGTTTGCGTACGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.30,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 97323-96683 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG657562.1 Holdemania filiformis DSM 12042 Scfld11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 97322 33 100.0 34 ................................. CCGATATCCCCGATTTGTCTAAAGCTTATCTTTA 97255 33 100.0 34 ................................. TAATGATTGTATAAATAGCCTCTCCGCTTTCTGC 97188 33 100.0 36 ................................. AAAAATCTCGCATACATTGACCATTGGAGTAAATGC 97119 33 100.0 34 ................................. GCATAATGGGACGTTTGTCTATCCATTATAATAT 97052 33 100.0 35 ................................. CACTCATTGATCACAGGATAGTAATGTCGTTTTAC 96984 33 100.0 34 ................................. GGTTAGAAGCAATAGATAAATTAAAAACGGATAA 96917 33 100.0 34 ................................. AACGCTTTACACAGATGTGCGCATATCTGATCTT 96850 33 100.0 35 ................................. TTCAAGTTTTGAGAAACGAGTTACAGGGCCTTTGT 96782 33 100.0 36 ................................. TCACTTCCGGATTATCCGCAAGTCGGATATATCCAG 96713 31 87.9 0 ...................A--.T......... | ========== ====== ====== ====== ================================= ==================================== ================== 10 33 98.8 35 GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Left flank : GAAGCTGAAAATTGTCAGCAGTTAATTGAAAATCCTCAGTCTTTATCATCGGAAGAAATGGCAATACGAAAACTTCGCGGTCAGTTATTATTGGATCAGCAAGCTGCCGCTGAAGGATATACAGAGAATATACAAAGTGAAATTGATTCTTTTATACATCAGGAATGTCTTATCAATCGTGAAGGAAAACTATCTTTGACCGCTGAAGGATTGGGAGCTTTCTGGTTTAGCTTATTGAACGATGCTTATTATTAGAAACAGATAAAGGTCAGAAATGTTTCCTATAACATGTTCCTGACCTTTCTTTAAATTAGTAATAATTATTTACTTAGGAAAAATAAAGGATAATCTGGTGCGAACCTGAAGTGAACATAAAACCCTAGGGAGGTTCGCACCGGAAATTTGTGAAATTTATTTAAATAGTTGCAAGCAGCCAAGTGATTCGTTATTATAAGTATAGAATAAGTAACAAGTAAAACTTGTACAGTTTCTTATTTGCA # Right flank : AGGGGCTTTAATCTCTGCTTACTCATTAATAGTTTGAATTTGTACCTCAAGCAATGTATTAATTATTATGATAGCGTGCTGTTTTTTACTTGATTGGAAAAAGTTAGCCAGATGTAAGATTTATTTTGTGGTAGGAATAATTAGGAAATAAGATATAATATAACTATCAGAGGCTGTGTATAGGAGGTGTGTTTATGTTATTAGCACACTGGGATGGGAAAGAACATCGAGCACAATCCCTAAAAGATCATAGTGAAAATGTAGCAAGAATAATGGAAGAAAATTGTTTTTCGCTTGGCCTTACATCAACTGGACGATTAATAGGATTACTCCATGATGCAGGGAAAGCCAATCCTGTATTTCAGCAGTATATGCTTGAAAATCAAACAGAGAAGAAAGGGAAAATCAATCATTCGGCAGCAGGAGCTCAGATCCTAAGAAATCTATTTTTTGGTACGGAATTTTGGACAATGCCGAAAAAGCAGCAACAGTTCAGAATA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCATCGCTCACGCGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.20,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 103597-104502 **** Predicted by CRISPRDetect 2.4 *** >NZ_GG657562.1 Holdemania filiformis DSM 12042 Scfld11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 103597 33 100.0 33 ................................. CTAGATTGTTTTTATCGTTGCGACTATACATGC 103663 33 100.0 34 ................................. CTTCGTGCAGTAGGCAAACCGCATACATAGTACC 103730 33 100.0 34 ................................. TTTCGCCACCTTGCTATCTAAATCAAGATTAACA 103797 33 100.0 33 ................................. TTTAACGATGGCGCCGACCGCGATAGCCACTAC 103863 33 100.0 33 ................................. TGACCCTTGATGGTGGAAACCCTCAACGTGTCT 103929 33 100.0 36 ................................. CATAGCCGCTCAAACTGATAGTCATCCACAAAGCAA 103998 33 100.0 33 ................................. GCGTCTTTGCTCTGCAATCGGCGCATGATGTCC 104064 33 100.0 34 ................................. TCCTGCAGATCAATCTGCACTTGCCCGGGCTTTG 104131 33 100.0 33 ................................. TTTAAACTCTCGTGCAATCAATGAACCTGAAGA 104197 33 100.0 34 ................................. CATCACATACAATCTTAGACGGATAGGCGCAGAC 104264 33 100.0 35 ................................. GCAAATGGATGAAAAGGAGAACTAATTATCATGAA 104332 33 100.0 36 ................................. GATCACTCTGTTTATGTCTCTGTACAATCCTGTTCC 104401 33 100.0 36 ................................. AGCGGATCATTAGCGCTGAGGGTGGCGAGAAGTCCG 104470 33 97.0 0 .......C......................... | ========== ====== ====== ====== ================================= ==================================== ================== 14 33 99.8 34 GTCGCATTGCTCACGCGGTGCGTGGATTGAAAT # Left flank : GCAGATGATTTCGGATTCACTGTGCGGACAGCGCTGGGCGAGCAAAGCGAGTGTTGTTTTCTATTGGTCGCTGGTAGCCTATCGTTGCGAGTGGCGATATGGGATTCGGGCGCATCGAGTGGCATTGATCGACGTGGGACATGTTGGACAGAATTTATATCTGGGCTGCGCTGCGCTAAATTTAGGGGTTTGCGGGATTGCGGCGTTTGATGATAAAGTTTGCAGTGACATTTTTGGATTGGATAAAGATGAGGAATTTATTATTTATACTGCACCCGTAGGAACGATTAGTTCTGCGGATATTGAGAAAGAAAGTGGTTTCTATCGATTTGTGGAAGAAGAAGGTCTTTAAGTGCGAACGTGAAGTGAACATAAAAATTCTGGGAGGTTCGCACCGGGAAAATGTGAAAATTAAAGAAAATATTGCAAGTGTACCCAAGATTGTTTATCATAGAATTGAAATAGGAAACAAATAGAAGTCATTAAGTTTCTTATTTGCG # Right flank : TATCTGCACGTTAACAACCCAACGGAGATATGTACGTCGAATCACACAAATGATCCCCCTCTCTTAATACAGGCTGCGTATGAATTAAAACTTCTTCAATTTATGCGAATTAACTAGGCCGAAAAAAATCTCGCTTAAGAATAAGTGAGATTCACTCCAACACAGAAAAGTTTTATTAGAAAACTCTTATCAAACATTGTATCGGTTATCATTAAGTTGCTCCGCGGATCTGCTTTACAAAAAAATAAAACAATACCTTGAGCAAATGAGTTCAACTAGGTAAACTTAAAAAATTAAAACTCTAACGACCACGAAACCAACACGATTACCTCTATTCATCCCGTTGTTCGTAAAAACTCAAAACATTGACCAAAATCAAGAAAATAAAAAAAATCGTACACTTTTCGTACATTTTGAAAACGAAGGTATCAAAACCACCCGTAAAACGGGTGGTTTGCTTTGAGCCTATAAGGCTCTGTTCCTGGCCTGCGCCTCAAGGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATTGCTCACGCGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATTGCTCACGCGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.70,-6.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //