Array 1 1869508-1866888 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020017.1 Tetragenococcus halophilus strain KUD23 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1869507 36 100.0 34 .................................... TTGTCGTCTAAGTAGTCGATGACGGTATCTATTA 1869437 36 100.0 34 .................................... ATATATTTCTTTCTGCTTTTCGTTCATGCCGTCA 1869367 36 100.0 36 .................................... GTTGTCGTCCAAATAGTCGATAACGGTATCTACGAC 1869295 36 100.0 37 .................................... TTTTGTGCTTTCTCATTCTATGCCTCCTGTTTATTAT 1869222 36 100.0 36 .................................... CCATAGCTTTCTGGTAGTTCCCTATTGTAGTAGTGA 1869150 36 100.0 36 .................................... GTTTTCTTTTGCCTTTTGCATTAGTTCTAGTAATTC 1869078 36 100.0 36 .................................... GCCAACGATCATATCTTCGTAAATATCGTCAAAACC 1869006 36 100.0 35 .................................... CCATAAACATTCGAAATAGCTTTCTCTATTTCTTT 1868935 36 100.0 37 .................................... TTTTGCTTTGCAGCCACTGGCAGTAAATGGACTTGTC 1868862 36 100.0 35 .................................... ATTTACTAAGATGTAAAGTATTTTTTTGCTTAAAT 1868791 36 100.0 37 .................................... TCCAGTGATCCCCACCGCTGTATATAAGAGTTCTAAG 1868718 36 100.0 35 .................................... TTACAGGTGCCGTGGAATAAACAATTATTTTATTT 1868647 36 100.0 37 .................................... AATTTTCTAGTTGATCAAAAGTAGTTGTTTTAATATT 1868574 36 100.0 35 .................................... AAGCTATGTGGTTTCCGGTGTACTAGACTAATAGA 1868503 36 100.0 36 .................................... CGTGTACCAGGCTACCATTTTCTAATTTGCTTACTT 1868431 36 100.0 35 .................................... TGGTACACCGCCGAAATACCAAAAAACGATAAAGT 1868360 36 100.0 34 .................................... TATACCAGGGCATAGCTCTTTAGCCCTGATCTGT 1868290 36 100.0 35 .................................... CTGTCAACAACTTTTCTTATTATTTTCTTTTTTCT 1868219 36 100.0 36 .................................... AAGAAATTTATTTATAATATTTTGTTACTCAAGTGT 1868147 36 100.0 36 .................................... AAAATACTTTTCATACTTCATCATTTTCTTATATTT 1868075 36 100.0 35 .................................... CAATTTTCTTTTGTGTTTTCTCATCTAAACTTCCT 1868004 36 100.0 35 .................................... TCTATGTCTTCTAAATAGACTTGCTCTTCCTTGTC 1867933 36 100.0 37 .................................... AAGAAGTCTTCAAATTTTTGTTTATTCTTTTGCTCTT 1867860 36 100.0 35 .................................... CCTTTCTTATATAAATAGATAACCCCATAATAAAA 1867789 36 100.0 35 .................................... TTCCTGATCTTTCTTGAAAATTTTCTTTTACTAGT 1867718 36 100.0 36 .................................... TCAATCATGTGGATTCTGTTGATATCATCTATTTTT 1867646 36 100.0 37 .................................... TGCATGCCAAGTTCCACAGTGTCAGATTCTTCAATTT 1867573 36 100.0 37 .................................... TAAAATATGTTTAGATAGAAAGAGGACCAAGCAAATA 1867500 36 100.0 37 .................................... TGTTTCAGGTAAAACAATCCCCTCATGATCTAATACC 1867427 36 100.0 36 .................................... CGGTCGTCTAAGTTATAGTTGGCGCTTGGATCTTCT 1867355 36 100.0 38 .................................... TTAGCCGTGTATTCGTCCATATGGTAAAGCCCTATATA 1867281 36 100.0 35 .................................... TAGAGCAGAAGAAGCATTTAAGATTTCATTTATCG 1867210 36 97.2 35 ...................C................ TTCAATTTTCAAAGTGCCGTTTTTATATTTATCAT 1867139 36 94.4 35 ...................C............T... GGCTTCTTTAAATAATATAATACTGGGTAGCTTTG 1867068 36 80.6 34 ....A..GT.C...T....C......A......... GAAACCAAAATGAAATTGCAGCTATTGGAAAAAC 1866998 36 91.7 38 .............T....C.........G....... CTATGTGTTGCTTTGCTTTAATTCGTTGCCAGTTATCA 1866924 36 91.7 0 ..............T....C...............T | T [1866893] ========== ====== ====== ====== ==================================== ====================================== ================== 37 36 98.8 36 AATAGATACCTAACCCCATTATTAGGGGACGAGAAC # Left flank : TTTGAATATAGAGGGATTCGAAGACGTCGTATTAAAATTACGATATTCTCTAAAAAAAGCAGGGAACGAGTTAAATACAGATCGATATTTAAGTCTGCCGCTTTATGCTGAAATTATTCGTATTATTCAACCTGATAGTTCTTTATTAAAACTAATTGATAAAGTAAATGGGGTAAATACTTTTAGAAATCAAGTTGCACATGGATTTAAGTCAATTAATATGAAAAATTCTAGAGTGAAAGATCTAGCAGAAACTTGTTGGATGCTATTATTAATCGTTAATGATGTAGATGAAAAATGGCGTTCCTATTTTGAGGATAAAAATAAAGTTTTTAAAGAAATGGTTGGTTATTGAGCAGTTTTCTTGTAATAGAAAGTATTCTCTCAAATAATTGTCAAATTGTGACCAAGGATTGAGCTTTAGAAGTAGTTTATGGTCAGTTTATGGACTAATGAAAAGTATTCTTATGGCTGATATAAAAGCTTTTATGATATTATGT # Right flank : TAATATAATGTTTGAATCAATATAGTGAGGAGTAAATATAATGAGAGATTGTATATATGTTGAACACCAAAATTTTGTTTCTGTTGTAACTAATAGCTTTAAATTCGTTAATGTTGTTTCAAAGGAAACTACTTATATACCTTTTTCAGAAGTTGAATGTTTGATTTTTGAGAATGAGCTTAGCTATTTTTCTAAAAAATTGGTGTCTAAATGTATGGAAGAAAATATAGCACTATTATTCTGTGATAAGAAACACTCACCAGTAACCATGCTTACTAATGATTTTGGTCATAGTAATCGGTTAAAAAGGTTAAATCTTCAAATGTCTTTGGGTAATAAAGTGAAAAAGCGTTTATGGAGGAAGATAGTTATTGGGAAAATTAATAATCAGGCGGTAAATTTGCAATTGTTGACTGAAAATAATGATATGGGGAAAATGTTGGTCCTTGCTTCAAAGCAGGTAGATGAAGGAGATACTAAAAATCGAGAAGCTTATGCTG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATAGATACCTAACCCCATTATTAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.70,-6.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [17-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //