Array 1 413892-414896 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYZI01000002.1 Escherichia coli strain FO1 contig002_Escherichia_coli, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 413892 29 100.0 32 ............................. TTACGCCATCAGTTGAATATGTGCGCGCCATT 413953 29 100.0 32 ............................. CGCTACTTGCGCCGGGCGCAAAACTTGGCTGA 414014 29 96.6 32 ............................T GGATCTGTGGGATTATCAACGAGGTCAAATAA 414075 29 100.0 32 ............................. TCTTCACCGGTTTTGATTTCAAGTTTTTTGAG 414136 29 100.0 32 ............................. CGATCTTCAATTCTGCAAACGTCCAGGTAATA 414197 29 100.0 32 ............................. GCGCGGCCTGTCTTATTCCGTCTAATACCCCT 414258 29 100.0 32 ............................. CGTACGCGATGTGGATCAGTGCCGCGTTCTCT 414319 29 100.0 32 ............................. GCGAACTCGTAATTTATCAGGCTCGAATTCAG 414380 29 100.0 32 ............................. GCGCTCACGTTTAGTGCCAGAGCCAGGCGGCG 414441 29 100.0 32 ............................. TCGCTGGCTACCCTGGGGGTATTCAGTGACTA 414502 29 96.6 32 ............................T TGAGATGCCGTTTGCCGTTTTTCTGTTTTTTC 414563 29 100.0 32 ............................. TTCTCAGGCTTTACCCACTCTTTTACAGTGTC 414624 29 96.6 32 ............................A GAAGTTCGGCATTGCCCGCAAAGATTTGTCAC 414685 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 414746 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 414807 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 414868 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 440599-442032 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYZI01000002.1 Escherichia coli strain FO1 contig002_Escherichia_coli, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 440599 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 440660 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 440721 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 440782 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 440843 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 440904 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 440965 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 441026 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 441087 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 441148 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 441209 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 441270 29 100.0 32 ............................. AATGACTTTATCGACCGCCCGATCGATGTTCA 441331 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 441392 29 100.0 32 ............................. AATTAAAATCCCCGTTTCTGTTACATGGGCGA 441453 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 441515 29 100.0 32 ............................. TATGCCTCTTTTAAACGCGCCGCCTTTTTGCC 441576 29 100.0 32 ............................. ACGAAAATCGCCGCCGGTGTCCTCGCTGATCA 441637 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 441698 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 441759 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 441821 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 441882 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 441943 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 442004 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //