Array 1 804041-804801 **** Predicted by CRISPRDetect 2.4 *** >NZ_UIFT01000001.1 Klebsiella pneumoniae isolate ID_60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 804041 28 100.0 33 ............................ TAACTCGGCAAGCGCCGGCCAGTGACTTGCCTT 804102 28 100.0 33 ............................ TCTGACGCATCAGTTTTTGACGGGTCAGATTTT 804163 28 100.0 34 ............................ AAGGCCAGGTTCCAAACATGCTTGTTTTTGATAA 804225 28 100.0 33 ............................ CGAGCACGGCCCGGTGCAGATGTCCGGGGGTGA 804286 28 100.0 33 ............................ TGCTGTGCTCGATAACCTGCTCGGGCGTAAATC 804347 28 100.0 33 ............................ TAGTGGGGCGGTCATAGCTCAAAATTTCGGGCT 804408 28 100.0 33 ............................ CAACCCCGGCACACTGATCGCCCCGCATGGCCT 804469 28 100.0 33 ............................ CGAGCTTGTTTTTATCGGGGTTCAGTAGCAGGT 804530 28 100.0 33 ............................ TGTTTTTGTATATATCGTGGCTGCTGTATTTTC 804591 28 100.0 33 ............................ CAAATGGGAGAAGCTAATCGTTGGGGTGCTGAA 804652 28 100.0 33 ............................ TTTTCGAACGTCATCGACGGCTTTTAGCATTTA 804713 28 96.4 33 ..................A......... CATTGGCTGTGGCGCCTGGACAATCGGCAAAGG 804774 28 85.7 0 .C....T............A.......T | ========== ====== ====== ====== ============================ ================================== ================== 13 28 98.6 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGCCCAGGTCAGCAGCAAGTCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAACTATCGTAAATCTGGTATTTTAATACGCCGCTAGACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGACATCTAAATCATTCGAGTTTATTACTCGTCTGGATATATTATTCTTCATATTAATTATCTATGGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGGTATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 813555-814987 **** Predicted by CRISPRDetect 2.4 *** >NZ_UIFT01000001.1 Klebsiella pneumoniae isolate ID_60, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 813555 28 100.0 33 ............................ TTCAGCTGAAAAGCAGCAGGACGTCGATTGGGC 813616 28 100.0 33 ............................ TATATGGTGTGCTGACGGGCTGTAAAAATCTCG 813677 28 100.0 33 ............................ CTCGTTTTTGAACTGCTGCCAGTGCCCCGCGTA 813738 28 100.0 33 ............................ TCCCCTATATACAGAGGCTCACCTGCTGGCGCA 813799 28 100.0 33 ............................ TACAGTTAAATAGCTGGGCAGAAACGGTTTTGC 813860 28 100.0 33 ............................ CTAACGCGGGCGCCGCTGAAATTAGCGCGGCAT 813921 28 100.0 34 ............................ TGAGTGGGGCGAGTCCCTGCGCGATCCCGCTGAA 813983 28 100.0 33 ............................ CCAAGCAGGCTGGCGCCCGTATGCGCTCAGGCG 814044 28 100.0 33 ............................ TATCCACTGCAGCGTCCATGTCGCCTTAAGGTC 814105 28 100.0 33 ............................ CACCCGGACAGCATGGCGGTCAGATTTTTTGTT 814166 28 100.0 33 ............................ CTGGGCCTCATGGGCGAACGACATTCGCCTGAT 814227 28 100.0 33 ............................ CACGCTGACGGAAAAGCAGCAAACGCTGATGAC 814288 28 100.0 33 ............................ CCAAAACGCATTCAACTGAGATCAACGCATCAT 814349 28 100.0 33 ............................ CGGCTACTGGTCACTCGCCGGCGGCACCGCGCC 814410 28 100.0 33 ............................ CGACTGCAACGCCATCTACACGACTTTGTGCCG 814471 28 100.0 33 ............................ CAGGCCGCAGTCGCGTTAATGGTGTGGACGCTG 814532 28 100.0 33 ............................ TGAGCAGAAACGGCTGGCGCTCTATGAGCTATG 814593 28 100.0 33 ............................ TCCCTGATATCTGCAAATGCCTGGGTAAGTCCA 814654 28 100.0 33 ............................ CGCGGGTAGTACGCTGGCGGGCATTCCGTTTAC 814715 28 100.0 33 ............................ CGTGTCGGCGGAGTTTGACAGGCTGACAGCCAG 814776 28 100.0 33 ............................ CTTGGCCCCGCGCCACGGGCGGCACGGTAGCAA 814837 28 96.4 33 .......G.................... TGAGATGGTCTCCGCCCCTTTGACCCGGATCCG 814898 28 100.0 34 ............................ CAGGGCGCAGTCGAGGAAGAAGATACAGATCAGC 814960 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 24 28 99.9 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCTCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAAGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGCATTAGAATAAATATTTTATAGCCAACGAAACTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGTAGAGGTAGGAATATTTTATTGCGATAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //