Array 1 3689-251 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXDQ01000236.1 Xanthomonas oryzae pv. oryzae strain BXO25 contig_236, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 3688 31 100.0 34 ............................... AGTCGCCAGTGAAGTCTCCCAGATGATCCCCCAA 3623 31 100.0 34 ............................... TCAGCCTCAGTGGCAGCAGCCACGTTGACGGATG 3558 31 100.0 34 ............................... TGCGCGAAGGGTACGAGGATTTTTTGCGGCTGGT 3493 31 100.0 34 ............................... GCTGTGAAGCGCAGGCACTAAAGACCCTTCGGGT 3428 31 100.0 35 ............................... CACCCTGTAGCTCGGAAATTGCCTGTCTGACGACT 3362 31 100.0 34 ............................... CTGCACGTATTCAATCAGCGCGCTGTCGGTGCGG 3297 31 100.0 34 ............................... GTAATTGCAGCAGGTAGCAAAACATCAAAGCCAT 3232 31 100.0 36 ............................... TTGACCGTCGCGCCGAAGCTGCGCTGCGCGCGCACC 3165 31 100.0 35 ............................... TACCTGTGGCGCGTGCGTATCACCGACCGCGACGG 3099 31 100.0 36 ............................... TATGTCGGCGGCAAGAAGTCCGAAAAGCAGCTGCGC 3032 31 100.0 33 ............................... TCCCAGCAGGCCTTAACCGCATGGTCTTTGCAG 2968 31 100.0 33 ............................... AGAGGTGCTTGTTAGTGCTACGGGGGCGTATGC 2904 31 100.0 35 ............................... TGGGATCAGCGCACGGAATATGGTCGTCTGCGTGC 2838 31 100.0 34 ............................... CTGATTCCACTGCTCGATTGCCTTGAGGGTGTCG 2773 31 100.0 34 ............................... CTCAAGATTGCACAGTATCCAGAGGAGGTGACAA 2708 31 100.0 34 ............................... TGCATCTCCTCTGGACTGCTTCTAAACTCAGCAT 2643 31 100.0 34 ............................... CGTCAATACTGATCTTGCCTGCTATCGTCTCCAA 2578 31 100.0 33 ............................... CCAGGTGAGCGGAAGTCGTTCCTCTGGCTCAAC 2514 31 100.0 35 ............................... CAGCTGATGCTGGTACTTCAGCTGCTGAAGCTTCT 2448 31 100.0 35 ............................... CTGTACGGATGCAGCAGATTCTGGGCGCTTGAAGT 2382 31 100.0 35 ............................... ACATGTTCGTGACTACTTAGGAGATGAACGGGAAA 2316 31 100.0 35 ............................... AGCAGCACAACGACGAAGAATTACCCGGTCCAGGG 2250 31 100.0 35 ............................... ATGGCAATGCGCAAAGCACATGGCAACACTGCCAC 2184 31 100.0 34 ............................... AAGAGCCTACGGAGCCGGGGCAGCATCCATTGCA 2119 31 100.0 35 ............................... TTTCAAATGAGCGATATGCACCTGCCCACTGACAG 2053 31 100.0 33 ............................... TTCCCTTGTATGGTGAGGATGGTCAGTTGGCAT 1989 31 100.0 34 ............................... TACAGTTAACAAGTGTGTTGAGGCAGGAGTAAAA 1924 31 100.0 35 ............................... ACCATGTACTATGTAGCCCTTTCCCTTGTGTGTGA 1858 31 100.0 34 ............................... TCATACACCTACCTGCCGTTTGAAAGTGTGTACG 1793 31 100.0 34 ............................... ATGACAACAGGATTGCAAATTTGAAGAAAAGGAC 1728 31 100.0 37 ............................... TAATATGTTGCGGACATAGGGTGGACAACCCTTGTTC 1660 31 100.0 35 ............................... TGTAGGTCCAGGCTCCCTGGCTCTGGCCTTGGTAA 1594 31 100.0 35 ............................... AGGTTACCTTGGCTCGGAGGCACTCAGCAAAGGTG 1528 31 100.0 36 ............................... AGCCAGACAATCAGCAGTATCAGCAGTGCAGACCAC 1461 31 100.0 33 ............................... TCTTCTAACTACATTATGTCGGCGGAGCTATAA 1397 31 100.0 35 ............................... CGGTACTTGTAGATAAACTCCTGCACCCTGAGCAC 1331 31 100.0 35 ............................... AGCAGCACAACGACGAAGAATTACCCTGTGCAGGG 1265 31 100.0 35 ............................... CTGCACTGCGTCGCCACGCGCATCGACATTACGAA 1199 31 100.0 33 ............................... CCCGAGTCCAAGCCATACCAGACGGCGACGACC 1135 31 100.0 34 ............................... TTGTGGGACACGGCGGATATGGAGATGTGGGAAA 1070 31 100.0 35 ............................... TCGTAGAGCGTGACAGTGCTGGGAAGGTCTTGAAC 1004 31 100.0 35 ............................... GCATCCACAGCAGGGATGCTTGCTCAACAAAGTGC 938 31 100.0 34 ............................... GTCGGGTCGACGGACGGTCGTAGCTCACCCACAC 873 31 100.0 34 ............................... CGGACTCAGTGGTGATCCGGTATAACCGAGTTGC 808 31 100.0 35 ............................... CTCGCCAACGTGTGGGATATCAGCACCGCGACGGG 742 31 100.0 35 ............................... CTGACGCGCCAGCCTGCGACGTACGCAACCGTGAC 676 31 100.0 35 ............................... GCGCTGGCCGCCTTTACCTGGCGACTCCATCACCT 610 31 100.0 35 ............................... TCGCTAGACTCGCAGGACTACGACAAGGTCGAAGC 544 31 100.0 34 ............................... GACCGTGTTGCCGTGCGACTCGTAGCCGACCGAC 479 31 100.0 34 ............................... TGGGGCGTGTTTGCGTTTCCCCCGTCCGCCGGTG 414 31 100.0 35 ............................... TCGGGGCAAAAAGTTCGCGTCAATGCGCACGGATT 348 31 100.0 36 ............................... ACCAAAGATCGCGCCGACCCCAATAAGCCGGTGGCC 281 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 53 31 100.0 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : GGAAGTAAGAGGACGCCCGCGCATGATGGTCTTGATCAGCTACGATGTCAGCACCAGCTCCCCGGGCGGCGAGAAACACCTGCGCAAGGTCGCCAAAGCTTGCAGGGACCTTGGTCAGCGTGTCCAGTACTCGGTCTTCGAGGTTGAAGTGGAACCGGCGCAATGGGCCGAGCTTAGGCAACGCCTATGTGATCTGATTGATCCCAGCGTCGACAGCCTGCGCTTCTACCACCTCGGCGCAAAGTGGGAAGCCCGCGTAGAGCACGTCGGTGCCAAGCCAAGCCTGGACTTCAAGGGTCCGCTGATCTTCTGACGCGAACCCCAAGCGACTTGCGAAAGCCGGGCAGGCTCGCGAAATTTCCAAGTGATTGATTTTAAAATAAAATCACTTCACTTGCCATCGCGGGTGCTCATATTTGCAAGGCATGGAACCTGTTCGCGTTCCTGTTCGCGAAATGACGGGTTTTCCCTCAAGACGCGCAAGCACTTATGCTGGCGGG # Right flank : CAAGATCCTGATTAGCCCTGACCTTCAGCTGCAGCACCTCCGCGCTTATCGCTAAACCGGCCCAATGCCAGGCCGCCATGGGGCCCTGGCTGAAAGAACTTCGCACCGGCTCCTCGCGTCAGGAGCGCCAAGATCAGACATCATGGAACACATCGGTAAAACGAAGCTATTTGCAGGACTGCAACAAAAATCCAGCTGAGGGTCAGGGCTAATCAGGTAAACATTTCTCCTGTAGCGAATGCATCTTTACA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //