Array 1 85001-85304 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBIU01000003.1 Helicobacter valdiviensis strain WBE14 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 85001 37 100.0 29 ..................................... TAAATTTATAGTGATGTTATTCTTAAGAA 85067 37 100.0 29 ..................................... CCCTGCTCTTATTTCTTTAACATCTAAGT 85133 37 100.0 29 ..................................... CATTCCTTACTACCTACTAAATCTTTGCT 85199 37 94.6 29 ........T..............T............. GCTGCCCCATTAGTAATTGTCACATTTAC 85265 37 81.1 0 G......................T..TT.TG.....A | G,T,T [85286,85288,85292] ========== ====== ====== ====== ===================================== ============================= ================== 5 37 95.1 29 TATTGTAGCATAAAGTAATTTAACAAGGGACTAAAAC # Left flank : GATAATTATTCAAAAGAACTAGCAAATAAAAATAAAGAAATGCTAGAAGAGGAAATGCAAGAGGCAAAAGAGCAATATGAGGCTAAAAGTGAGAAGAAAAAGCCTTTTAAGCCCATAGAAGGTAAGAGTGAAAGTGAGACTTATAAAGAAGAAATAAACTCCGGCTTTTGGGAACAATTTATAAAAATACAAAGAGAAAAAGGGGTAGATATTTTAGAGCTTTTGGAAATGTTGCAAAAAAAGGGATTGGATATTAAAGCGTAAAGTAGAAAATAAATACATTTTTGTATTTATGGGTTTTGTGTAACAAAATTTTAAGGATTTTTAACAATCTAACATTTGATAATTGCGGTTTTAGGGAATTGTAATCCCGCGGAGTCCCGCAAACTCCTTATTTTAGTCCCTTGTTAAATTACTTTAAAAGATATTAGCATATTCTTTGGTATTTTTTACTTAAATACCCTCACAAACCCTCTTAAATACTTGTTTTTTTAAGAATC # Right flank : AAGTAAAATTATAAGGTAAAATGGCATTTTGGAATGAAAATTACCCCTTGTTTTATATAATCAATAAAAGTTATGTATAATTATTAAGCTTAAATATAAAAAGGATTGATGGAATGAAAATTTTGGGTTTTGATATAGGGGTTAGTTCTATTGGGTGGGCTTTTGTAGAGGATAATAAGTTGCAAGATTGTGGGGTTAGAATCTTTACTCAAGCAGAAAATCCTAAAAATAAAGAATCGCTAGCATTACCAAGACGCAATGCAAGAAGCACTAGACGCAGATTAAACAGAAGAAGCGCAAGAATGAGAGCTATGAAACATATTCTATCTAATGAATTTGGATTAAAATATGAAGATTATATTGCAGAAGATGGAGTATTGCCCAAAGCCTTTAAAGGAAAATTAATAAGTCCCTACGAATTGCGTTATAAGGCAATAAATGAAGCTTTAAGTAAAGAGGAATTAGCAAGAGTAATTTTACACATTACAAAGCATAGAGGT # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATTGTAGCATAAAGTAATTTAACAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 89914-90477 **** Predicted by CRISPRDetect 2.4 *** >NZ_NBIU01000003.1 Helicobacter valdiviensis strain WBE14 contig3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 89914 36 94.4 30 ..T...................C............. AAAGCAGCCTCATTCTCAGCCTCTTTAATT 89980 36 94.4 30 ..T...................C............. CGCCTCTCTGCCAATAACGATACACGCCCA 90046 36 100.0 30 .................................... AATACCTGTAAGATTGTTTTTAAGCTTTTT 90112 36 100.0 30 .................................... GTTTCTTCGTTTTGCCTCTTCTGCTAAAAA 90178 36 100.0 30 .................................... GCTAAGGAATAAATTTTAGGTTGCGAGAAA 90244 36 100.0 30 .................................... AATTCAAATGTTGTTAATTGTTTAAAATTT 90310 36 100.0 30 .................................... GCAATGCTATCATCTATCTCTTTTTGTTCT 90376 36 94.4 30 ..T...................C............. CAAAAAGACTTTGATTTAAGTGTGGATTTA 90442 36 83.3 0 ..T......................ATTG......T | ========== ====== ====== ====== ==================================== ============================== ================== 9 36 96.3 30 ATCGTAGCATAAAGTAATTTAATAAGGGACTAAAAC # Left flank : GCTTCAATTTAGTGTGTATATGCGGATTACAAAAGGTATTGAATCTGCTAAAAATTCTATTGAGGCGGTAAAAAGAGAATTGCCTCCTTTTGGAAATATTAGAGCATTAATTGTTACAGAAAAGCAATTTGATAATATGCAATTACTTTTGGGCAATACAAGTTTTAATGAGGATATAAATCAGGATAAAAATTTGGCTTTATTTTGTATTGATAATAAAGGGGATTATCAATACAAACAAGATAAATATGGTAAAGATAAACCAAAAGAAACACAAAATAGAAAAGATAAATTTAAGCAACCAAAATTATTTGAATTTTAATGAAAGTCTTCTAAGGATTTATATTGCGGTTTTAGGGAATTGTAATCCCGCGGAGTCCCGCAAACTCCTTATTTTAGTCCCTTGTTGAATTACTTTAAAAGATATTAGCATATTTTTTGGTATTTTTTACTTAAATACCCTCACAAACCCTCTTAAATACTTGTTTTTTTAAGAATCT # Right flank : TTTAAATATGTCTTATTGGGTTTAATCACTAAAAAGAGTTTGCCAAAGCTAAGAGAATAATTTTTTGGCATAAAGCAACTATATTGGCAAATATTGGCTTTTATTATTGTTTGGTTTTTATTTTTTGGATAAAATTTGCTTTATGGATAAAGTAATGTTGGATTTTATTGCAAGAAATCATCTTCTTTCTTTAAGTATGGTTGAATCTAGCTTGGAAGTGTATTGCGTGAGTGCATATTATGCCTTTTATGAAGAGAATTTAAGCCTTGTATTTAAAAGTGATAGTAGCACAAAGCATATTGCTCTTTTAGGGCAAAATCCAAATGCAGGGGTGATTATCGCACAAGATTCTAAAAATCTCTTAAAGATTGAGGGGTTGCAAATCAAAGCTTTATTCCAAAAAGCCTCCGAAGATGAAAAAAAGGCTTATTATTCTAGTTTTCCTTTTGCTAAAGCAATCAAGGGAGATGTGTATGCACTTCATATTCTATGGGCAAAAT # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGTAGCATAAAGTAATTTAATAAGGGACTAAAAC # Alternate repeat : ATTGTAGCATAAAGTAATTTAACAAGGGACTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //