Array 1 1-364 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATCO01000155.1 Geobacillus sp. WSUCF1 Contig0155, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1 27 90.0 37 ---........................... TGAACGCGAAGCGAAAAGCACAACAAGAGGAGCAAAC 65 30 100.0 39 .............................. CTTGTACATATCTTGATTTTTCTCCCTCGATAACTTCGG 134 30 100.0 37 .............................. CAATTAATTTATTTTCTTCTTTTACGCAAGGAAAAAC 201 30 100.0 41 .............................. CCTTTTTCAATAAAATAGTCCAAGTTTTTCATTTTTTTTCG 272 30 96.7 33 T............................. TTTTTGCTTGCGGCGGTCAAGCCAATCTATGAT 335 30 76.7 0 ............T.C.CA...A.C....C. | ========== ====== ====== ====== ============================== ========================================= ================== 6 30 93.9 38 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : | # Right flank : CCTCTTCATCTTCGCGCGCAGGTGTGATGGGGGGCTCGTTGTTGTCGCAGAGTTAGTTCAGACCACATCTCTCATTTGCTTCGTTTGCGGTGATGAAGCATTGTGCGTAACGGATGGGCGCCTGCGGAACAGGCAGTACAGCATTCTAAGTTGGGCAAAGGCATTTCTAGTCTCACGGGTTGCCTTTCTAAGTGACGGGAGAAAAAAATAAGATGGCAGCGATCTATGTTGGCGGCATCTTTCGATCGAGGGAATCCCTTCTGAGCAGGGGATTCTTTTTTTGTGTTTCGTCCTCCGACGTTGTTTTGCGTCGCTCCTTAAAAGGGGGAAGCAACGGAAAAACCAGCTGGAAGAGACGCTCTTTTACTTTCGAGGGCCCTTGTTATTTTCCATTCGCCTTCGTGAAGTTGGGTGGAAAATTCGTTTTTCACCCGTCTCTTCAGTGGGAAAATGTTTGAAATTGTTAAAAATATCCTCCTCTATAATTGAAAAATAGGATA # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.96%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 755-51 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATCO01000268.1 Geobacillus sp. WSUCF1 Contig0268, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 754 30 100.0 38 .............................. CAGGCATAATATTAAAAACAACCAATGCAATTGGTTTA 686 30 100.0 36 .............................. CTCGTCGAGTTGGCTAAAGCACTTTGAGAAGGAGGA 620 30 100.0 37 .............................. TCAGATGTCATCAACGGGGCGCCTAACGTTCCGCATC 553 30 100.0 38 .............................. AAATTATAAAAGTAAACGGCTCTGTCACGCATGAACTT 485 30 100.0 38 .............................. TCATTTTCATCCGCCAAAAATAGGAGATATTGTCATTG 417 30 100.0 37 .............................. CAAAATGGATTTGTTGGTCATTTAGGTGGTTTTGTAA 350 30 100.0 37 .............................. AACGAGGGGAGAACCACCGACCATCACGACATCAACG 283 30 100.0 38 .............................. AGACAATGTTCGAGCAACTTATCCAGTTCCGACTCTGA 215 30 100.0 37 .............................. CTCCCACTTTGATATGGGCGTGAGCAAAACGCTTTTG 148 30 100.0 38 .............................. AAATTGCGGTTGAATTTGCCGAACAATCAAGCCGAGCG 80 30 96.7 0 T............................. | ========== ====== ====== ====== ============================== ====================================== ================== 11 30 99.7 38 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : GAACCCGGCGCTGTCCGACGACATCATCCGTGTCGCCCGCTCGCCGATCCGCAAACTTGGGCCGAACGACCGCCTCGTCGCGCCAGCCGTGCAATATTGCGCTTTATTCGGCAACGTCCCGCACGGCTTGGCTAAAGGAATCGCCGCCCTCCTGCGGTTCGATGACGACCGCGACGTGGAAGCCGCCGCCCTTCAACAAACAATCGCCCAACATGGAATCGAAGGCGCGCTTCGGCAATACGCGGGGCTTGAAAGTGGGCACCCGCTCGTGGCGGCGGTGAGGGAAGAGTACGGGAGAATGGAGAAAAACAAAAGCTGACCGCCTTTCAAATGTCGTCGACCTCCAATCGTGCAAAAATCCCGGGGGATCGACGACAATGTTTTTTTGCGTCAAAATCCTACAACCAACACGGCTCAGCAGTATTGACAGAATTTTTGAAACGTGATATTCTGAAAACAGCTCAGAGAGAAAAAGCTTGATTTGATGCGTATGGTTTGGG # Right flank : CCCGAGAGTGTTGGCGGAGGCGCAGCGGGCGGCGCGTTTTTATCGTACCTA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 282-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATCO01000334.1 Geobacillus sp. WSUCF1 Contig0334, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 281 30 100.0 35 .............................. CCTTGAGACAATTCTATTTTCTTCATCCTCCTTCT 216 30 100.0 34 .............................. ATGCAAAAGTAAATGAAGAAATAAATGTATTGAA 152 30 100.0 38 .............................. AAAAAAGACAACCATTTGAAAAATGACGCGTTATTCGC 84 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 4 30 100.0 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TATGAGGGATTGAAACAAATGCGGGTTTTCCGCCGTTTTCTTTGGTGCCGG # Right flank : CATAGGAACAGTCATGCCGGCAATATGACCTGTCGCGGTTTTTATCGTACCTATG # Questionable array : NO Score: 8.86 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1-147 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATCO01000345.1 Geobacillus sp. WSUCF1 Contig0345, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1 14 46.7 35 ----------------.............. CTGTAAGACTCGGGAGCACCGCCGAGTCTTTGCGA 50 30 100.0 38 .............................. TCTTTATCACAGACCATCCAGTTTACGATTTCTTTTAC 118 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 3 30 82.2 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : | # Right flank : TTGCGTTTTTAATAGTTCTAATCTCTTCCTCGACATGTTTTTATCGTACCTATGAGG # Questionable array : NO Score: 7.47 # Score Detail : 1:0, 2:3, 3:3, 4:0.11, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 1-696 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATCO01000088.1 Geobacillus sp. WSUCF1 Contig0088, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1 27 90.0 40 ---........................... GGGCGATAGATGATTGTGATAACGTTGGGGCGTATGTGAG 68 30 96.7 38 T............................. AACGGTTTACCTCTGATGCTTTTCTTTGAAGGAAACGA 136 30 100.0 35 .............................. AAAAAGCGTTTAGCCGCCTGAATTAATTCTCTACA 201 30 100.0 36 .............................. CTTTTTGCAGATAGAGTAATCGAAAATGACGCTAAA 267 30 100.0 36 .............................. TATGTTTGAGAATGTTTTGGTCGTAGAGGAAGGCGG 333 30 100.0 39 .............................. AAACAGTTGTTTTTCCGTGACCCATTGAAGCGTCACAAA 402 30 100.0 36 .............................. TTTCCAACGATAATAATCTAAACAAAGTAAAACATC 468 30 100.0 37 .............................. ATGCGAAAAAATATTTCGAGGCCGACGCTGATCGGCT 535 30 100.0 37 .............................. ATTAGTTCTATGCGGTCGTTGTATGAGGGCAAGGTGG 602 30 96.7 35 T............................. AATCAAACCGAAGAAGATTTTGAACTGATTATTGT 667 30 96.7 0 ............................C. | ========== ====== ====== ====== ============================== ======================================== ================== 11 30 98.2 37 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : | # Right flank : CTATCTCCCTGCCACAGCTGAACCACTGCTGAGTTCAGCTTGTTTTACCGCTCGACATAGAAGACCGGTGAAAAACGGTGGCTTTCGCGTAATCAGCGTTTTGGGGCGCGAGAGAAGGCCTAGTTTTAAAAGACTTATCCACTTGAGAAAATAGTGTTTTTCGCGGTTTTTTCACTACATCACCACCCTTATAGGAAAAGGACGAATGCGAAATGGCGCATGCCAAAAAACGTGGGAGGGATAAGGAGGAGTTCGGCCGCGAAGGGCGAATACAGTACGGTGAATCCGACATTGCCGGGAGGGAAAACGTGGCTAGGAAGCGAATCGATCATGACCGGTTGTTCAAAGAGCTGCTGTCGACATTTTTTGAGGAGTTTTTGCTCCTTTTCTTTCCCGATGTGTACGAGTACATTGACGTTCACCATCTCTCTTTCCTCTCCGAGGAACTGTTCACCGATGTGACGGCCGGAGAGAAGCACCGCGTCGACTTGTTGGTCGAA # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : TTTTTTATCGTACCTATGAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 51-476 **** Predicted by CRISPRDetect 2.4 *** >NZ_ATCO01000346.1 Geobacillus sp. WSUCF1 Contig0346, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 51 30 100.0 36 .............................. ATCCGTGCCAACTTAGCCGATATATCTCCGTTTGAG 117 30 100.0 36 .............................. TCACCATCTTCCCGCGGTGGCAGGCAGGGTAAAACT 183 30 100.0 34 .............................. TCTGCCGGATCATCGTAATTCAATTTTCCGGCAG 247 30 100.0 38 .............................. AACAGGAGCGTGGCGTGCCGACCGGGATTGTGAAGCTC 315 30 100.0 37 .............................. CCTGCTTCGCCACCGGGCCAAGCTGGAGAAATTCCGC 382 30 100.0 35 .............................. CAACAAAGAGTCCGACGACGATACGCTTGAGATCA 447 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 100.0 36 GTTTTTATCGTACCTATGAGGGATTGAAAC # Left flank : TGAGGGATTGAAACCTGTAAAGTATAGACAACCATTTTCTTCCCCAGTGAG # Right flank : GAAATGCGCAGGATGTTTGGAATAAAGCGGATCAAGGTTTTTATCGTACCTATG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.40,-0.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //