Array 1 2751-3140 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVEZ01000049.1 Haemophilus influenzae strain 492_HINF 255_46575_767407_188+,...,37+, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 2751 37 100.0 34 ..................................... GTCCCCAAATTTTGTAGTACGTGCCATAATGTAT 2822 37 100.0 35 ..................................... TGTTGTCTTCTCTAGTCACTGTGATCTCTGTATTG 2894 37 100.0 35 ..................................... CCTCTAACTCGTTCAGCTTTTCAAAACCTCCAATC 2966 37 100.0 34 ..................................... AAGTTTATTTCATCAGATATTCGAGATTTGTTTT 3037 37 100.0 30 ..................................... TCAATTGACAGCTACACGCCGATCCTCTGT 3104 37 97.3 0 ..................................A.. | ========== ====== ====== ====== ===================================== =================================== ================== 6 37 99.5 34 GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Left flank : TAAATTCTAGGAAGAAAAAAATGGCACAATATTTAATTGGTTACGATATTTCCGATCCTAAACGACTACAACGGATTTATCGTCGAATGACAAATTATGCGACCCCCATTCAATATAGTGTATTTATTTTGGATGGCACAGAAAAACTACTTAAGCAATGTTTAGCAGAGATTATGTTAATTTTCCACAAAAAGGAAGATGATTTGCGCGTCTATCCCTTACCAGCCAATGCGGCTCAATGGCGACTAGGTAAATCAAGTTTACCTGATGGGATTTACTGGACGGCCTTGCCTACAGCCTTAACCTTATAAAATGCTACTGGAGTATTTCACAAACTTTGCTAAAATATACCGTACTTTTGGCTGAGTTTTGAAAAAAATAAGAATGATAAAAATTGTTCAATATTTAATCAAATCAATACCCAACTATTCAAACATCAGAAAAAGTTGGGAAGTGGCTCTGGGAAGCCTTGCCACACAAGGCTCTAACACCCCACTGTA # Right flank : CTCATGGTCTTCAGGAATGTCTTTGTTCACGATAGGTCGAAAGACATCGCCTGCCTAAAAGGGATGTACATCGCTAAAGTGCGGTTAGTTTTCAATATAAATTGGAAATCGACCGCACTTTTTATTTCCTTTCATTTTTACAAATCTGTATTTTCGCCTTTCTATTTATGACTTTTCTATAATTCACTCCGTTAGTAATTGATTTTTAGCTCAGAGGATTGAGCTCTAATTTAGTTTGTTAAAAATCTATAAAGAGAAAATAGAGAATTAAGCAATTATTGGCATATAAAACAATTGTTCTAATTTAAAAATGTGAGGGAATTAAAATGGCTGGAATTAATAAAGTAATTATTATTGGTAATTTGGGGAATGCACCAGAAATTCGAGCGATGCAAAATGGTGATACGGTTGCTAATTTTAGTGTGGCGACATCTGAAAGCTGGGTGGATAAAAATACACAGGAAAAACGTGAAAATACCGAATGGCATCGTATTGTGCTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAAGACATTGCCCTGTTCCAAAGGGATTGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-3.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 7865-8037 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVEZ01000032.1 Haemophilus influenzae strain 492_HINF 238_8804_145511_74+,...,188_, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 7865 32 100.0 38 ................................ GATTTTGTGGAAATGGAAGTAGAAAACGAATCAGTCTC 7935 32 100.0 39 ................................ TTAAATTCGGTGACGCAATTTCTAGCACTTTCTCGTCTC 8006 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ======================================= ================== 3 32 100.0 39 AATCCCTTTGGAACAGGGCAATGTCTTTCGAC # Left flank : TCCGTAAAGTCTTCAGGCGTGCCAACATTTGGCATTGAATTTTGATGTTCAAAACCTTTTTCCGGCACTTGGAAAGAAGCGGTTACATGACAAATGGTATTTTTATGTTGAATGGCTTTTACGCGTAATGCAGAAAAGTTACGCCCTTCACGCAAGGTTTCTACATCGTAAATAATCGGATATTGGCTATCTCCCGGAGCAAGAAAATAGGCATGACAAGAATGTAAAATACGATCTTCTGGCGCCACCTGCATTGCCGCTGATAATGCTTGAGCCACAACTTGCCCGCCAAATACTTGACGAAAACCTAAATCTTGGCTTTCACCACGAAAGATTAAATTATCAATTTTTTCAAGTTTAAGAAGATGAATGAGGTTATTGAGAATATCTGACATATTGCTTTCCTTGAAGAGACGATAAAAGTGCGGTTATTTTAGCGGAGATTTTGGGGAATGCCAAAGCCAGCAATAATTTTAAGATAGAAGTAAAAACTTAATTTT # Right flank : CTGCAGTGGGGTGTTAGAGCCTTGTGTGGCAAGGCTTCCCAGAGCCACTTTCCAACTTTTTCTGATATCTGAAGAGTTAGGTATTGATTTGGTTAAATATTGAACAACCTTTATCATTCTTATTTTTTCAAAACTCAGTCAAAAGTGCGGCGTATTTTAATAGAGTTTTTTTAATACACCAGTAGTATTTCTATAATGTTAATACATTATGACACAATAGCGGTTTTCGGCACCGCATGCCGCCAAAGTTTAATCTTTGGATGCGTTTTCTACTGCTCTTGCGATAGCTGTAGCAATCGCGACAACAAGTAAGCGTTCAAACATATTCTTCTTCCTGTTTTGTTGGCTAATATTGATGTAGCAAGTTCACAGCACTTGCCAAGCTGAGAGGCGCTAATCCTCCATGAGTCGGTCAACCACCTCTGTTACAACAGCTGCGACGATTAATTCTGCTACAGGTAACCACATAATTTTTCTCCTATCATCTACATTAATTACAC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCTTTGGAACAGGGCAATGTCTTTCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //