Array 1 308-1 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_WBMB01000194.1 Haemophilus parainfluenzae strain LC_1315_18 NODE_194_length_307_cov_1.286957, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                      	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	=====================================	====================================	==================
       307	    30	  81.1	    35	-------..............................	CGTTTGGCCCCAGGCACCGCAACGCCTGACAGTCC 	
       242	    37	 100.0	    36	.....................................	TGAGAGGCTGGTAGATGCGGAGGGTGAAGAACTTCA	
       169	    37	 100.0	    34	.....................................	GCAGCTAAAACCGCAGTCCCCTCCACTGCTTACG  	
        98	    37	 100.0	    34	.....................................	AAATCAATCAGAAGCGATTAGAGAGGCAATCACG  	
        27	    27	  73.0	     0	...........................----------	|                                   	
==========	======	======	======	=====================================	====================================	==================
         5	    37	  90.8	    35	GCCTCAACCAAGCTGAAACCCTCTCAGGGATTGAAAC	                                    	       

# Left flank :   |
# Right flank :  G

# Questionable array : NO	 Score: 5.60
# 	Score Detail : 1:0, 2:0, 3:3, 4:0.54, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GCCTCAACCAAGCTGAAACCCTCTCAGGGATTGAAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     R [6,12] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  NA [-4.10,-3.90] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [1-1] Score: 0/0.41
# 	AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0,4.87   Confidence: HIGH] 

# Array family : NA
//


Array 1 38840-39007 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_WBMB01000005.1 Haemophilus parainfluenzae strain LC_1315_18 NODE_5_length_140930_cov_543.813444, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     38840	    36	  88.9	    30	..AA..A.A...........................	CCGCACTTTTAGCGGTAGCAGATATGCCGC	
     38906	    36	 100.0	    30	....................................	CACATTCTTCTACCTTGCAACGGTGTTCTG	
     38972	    36	 100.0	     0	....................................	|                             	
==========	======	======	======	====================================	==============================	==================
         3	    36	  96.3	    30	GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT	                              	       

# Left flank :   GCCTTACCATCGGTGAAGTGAAAGGTGATGAATTCTGCGTGAATTTAATCCCTGAAACCTTACATAGAACCCTGATCGGCAAACGCCAAATTGGCGATTTAGTAAATATTGAAATTGATCCTCAAACACAAGCGATTGTAGATACGGTGGAGAATTATTTAAAAGCAAGAGGAATATAGTTAATTAAGATTACTATAAGGAGGAAATATGTTTAAAGATGAAATTGCTCTTATTCGCTTTTTAGGCAGAGAGTTTATTGTCGTGTTTAATGTGTTTTTTCTATTTCCGCTTTCAATTATTTTAGTGCTGATTGGCGTTATTCATGGTGTAATATGGAATGTACTTTTAGGTATTGTATTTACTTACCTCGTATTTCTTGTCTTATTTAGGATATTAATCTATTTTTTATATAAAAAATGGGAGAGAGAGCATCAGAAAAAAATGCAAGAAGAGAATAAAGTTAAATACATTATTATTAAATAATAAATTTATACTGTATT
# Right flank :  TCCCAAAATCCGAAGAAATCGCCGTTGTATTGGTTGTAGCAACAGTTTTATCTATGGCAGTTAAGACACTCACTCTTTCTTGGTTAAAGCGTAGTTGATGATGCAAGATTTTGATTAATTGCTGTTTTGATAAAGGACTAAGATTTTTGGATAGTAATTCTTTTTCGAGCAAGTTCCATACCAGCAAATCAACAATAGGGCGAAAAGGTTCAATAAAATCATCAGCCAAATTAAAGGCATTAAGTTCACTATGATGAAATAAGCCTAATTGAGGTAGCCAACCATAAAGTACAAGGCTTCTTGCCACAGCTGAACGCATACATAAATGAATATTTTTGCCAAGTTCATCTACTTGATATTTTTCAAAGGAAGTAGCAAGTTTTATGCCGACACTTTGATGAATACCATCTTTGATCTTAGATTTATCTAAATCATGCTCTTTAATATCAATATTACCTGTGGAACGATTAAGTCCATTAAAGTAACCCAAAATAGTTTTC

# Questionable array : NO	 Score: 5.17
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:60.71%AT]
# 	Reference repeat match prediction:         F [matched GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAAT with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  NA [0.00,0.00] Score: 0/0.37
# 	Array degeneracy analysis prediction:      NA [0-0] Score: 0/0.41
# 	AT richness analysis in flanks prediction: F [86.7-60.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [4.77,0   Confidence: HIGH] 

# Array family : II-C [Matched known repeat from this family],   
//