Array 1 3212-4262 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABIHV010000217.1 Yersinia similis isolate Kuratani-2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3212 28 100.0 32 ............................ ACTGGGCCACCCTGCCCGATTCGGTTGTCAAG 3272 28 100.0 33 ............................ CACTTTAGGGGTTGGTACTTTATCTTTATATTT 3333 28 100.0 32 ............................ TCTGCGTGGCGGATGTTGGTGTGTCTATTGCC 3393 28 100.0 32 ............................ TCCGTAAATGCTCATGCTTAAATAGGCCACGC 3453 28 100.0 32 ............................ AATAGTGACGTCAATCGGCCCGACAGTTAATG 3513 28 100.0 32 ............................ ACAATGTTTGATTACACTGGCGGCAGCGCGAC 3573 28 100.0 32 ............................ TGAGTAACTGATAGATGGTATAGATAGATCAT 3633 28 100.0 33 ............................ AGCCGACGGTCAATTACTATCACGCAATCTATT 3694 28 100.0 32 ............................ ACTAAAAGTACCTGCCGTTGCGTACACAGTGC 3754 28 100.0 32 ............................ GACCGGTAGCGAGCGGTGAAGTGTGTGAATGA 3814 28 100.0 32 ............................ AGTGCTTACCGTAGCTTTTCGATTACTTGCTC 3874 28 100.0 33 ............................ GTCGATTGGAATGCACCATTAGAGCTACTAATA 3935 28 100.0 32 ............................ TGGCTGAGTCGGACATTACAGCAGCATTAGAA 3995 28 100.0 32 ............................ AAGTATTCTGTAGCAAGTAACAGCGTCCAGAT 4055 28 100.0 32 ............................ ATACAAAGTCAAAAATAGAAGATGAGCAGCCA 4115 28 100.0 32 ............................ CCTGATTACAACAGTGATTACGTGTGGCGTAC 4175 28 100.0 32 ............................ AGTGACCCGACACCCATTAATAAAGCCCTGTA 4235 27 85.7 0 ...................A.A.-C... | A [4256] ========== ====== ====== ====== ============================ ================================= ================== 18 28 99.2 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCGCGGCGCTGGAGGGTGGCCAGAACTACACGGTGTAGCACCAGGTGGATCACCACAGAAATCAATAAGATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCACTGCTCCTTTAAAACATCAATCTGACGAAAAGGCCTTAGCCTAAAGGCTATGGGCACAGGGGGGGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCAGCAAAGGGGGAGACATATTTATATGCTGTGGTTTATGACATGGTTTGTGGGATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACCCATTGATTTTTCATTGTAGTTACCGGTGGTCTAAAAAAAGGGTTTTTTCCCTATTAGCGAAAGAATTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : ATCCTGGACCATGCTCTGATGCTATTTGGGGATCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGATAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAAGGTAAATAGCAGGTGGCATATCAATATATACCCGTCATACTTCAAGCTGCATATGTGTTGGCTGCTTTCGTCCTCCCAGTAACTTACTGGTGTAAGCTCTTGGGGATTTACTCAGTTGCCACCTTCTTGCAACTCGAATTATTCTGAGTATAGAGAGAGTTATTTTTTGGAATAATATCCACTTGGTACCTAAATAAAGCGTTAACGGAAAAATAGCGCGGTGGATATCCCTCTAAGGAGTTTTATTTCCATGGAAAATGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGGGGGCGAGTTGAATATGTCACCGATGAAGGTAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 20512-22339 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABIHV010000166.1 Yersinia similis isolate Kuratani-2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 20512 28 100.0 32 ............................ CTCGTTTATCGTGATAACAGGAGCGAATGTTA 20572 28 100.0 32 ............................ ACCGCCTCTTTCATCTCCGGCGCTGTGACAAA 20632 28 100.0 32 ............................ GACGATTGCTATGCACTCGTATCAGGGAGCCT 20692 28 100.0 32 ............................ TTGCGCCACGTCATTTGAGTGCTCACGCCAAG 20752 28 100.0 32 ............................ CACCGCCGCCGGTCTGCCAGTCGCCCAGCAAT 20812 28 100.0 31 ............................ CCGCCGCACAACCGTCCCAGACATAACTGGA 20871 28 100.0 32 ............................ ATTGGCGTGATCCTCGCTTGAATAATCCAGAC 20931 28 100.0 32 ............................ TTTTTCCCATCGACTCAAGATCCGCGTAAATC 20991 28 100.0 32 ............................ CACGAGAAGCCGAAGAGCTGGTTTACGACTGC 21051 28 100.0 32 ............................ GGATTCGCTATTGCTGGCGCTGCATTGGCATT 21111 28 100.0 32 ............................ ATTTAGCCCGGTGGTTTCCGTAATTGATGCAT 21171 28 100.0 32 ............................ GTCGAAACCCCACGATGTGGGTTCGAATGGAT 21231 28 100.0 32 ............................ TTTGATTCGGCCCAGCCAGCCTCCCGCGCAAA 21291 28 100.0 32 ............................ GGAGGCGGTGGAAAACATATTTACTTCAAGCT 21351 28 100.0 32 ............................ GCTGGCTTTCGCTGCCATAAATTCCTGATATT 21411 28 100.0 32 ............................ TGCTATCTTCTTTCTCGTCAAGCATTGTGATG 21471 28 100.0 33 ............................ CCTAACCCGGCCACGCTGCCGGGTTTTTTGTGC 21532 28 100.0 32 ............................ TGAGAAATCAACATTCCGTCATCGTCATTACA 21592 28 100.0 32 ............................ GCTATGAAATCGAAAGGGGATAAGACAGAACA 21652 28 100.0 32 ............................ TACATCGTGTCCTCCGGAGAGGGGCTTCACAT 21712 28 100.0 32 ............................ CGCGTAAAGACGATGCTTGGTATAAGAAAGAA 21772 28 100.0 32 ............................ TTGCTGTAAGGGCGCGTGACGAGCGCGGAATG 21832 28 100.0 32 ............................ AGACTCGCTGTCTGATGTTCGGCGAGCCGACG 21892 28 100.0 32 ............................ AATTTGAGACAGTGACCAGGCATTTTTCTAGT 21952 28 100.0 32 ............................ GACGAATCCCGGAGGATACCTGACATCAATAT 22012 28 100.0 32 ............................ AATTGTACAAAGTCCCTGAGCGCCGATGATAT 22072 28 100.0 32 ............................ ATCGCGCCCGTGCGGCCGTAAGTCCACTTCGT 22132 28 100.0 32 ............................ GGCGGGATATCGACTGGCGTCAATGCAAATCG 22192 28 100.0 32 ............................ AACGGCGGTAGAAAATCGCCCCATCACCGCAA 22252 28 100.0 32 ............................ GTCAAGGTACTCGTAAGCGCCAAACGCTAACG 22312 27 85.7 0 .................T...CC.-... | T [22338] ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AGGCTAGAAAAATCAATCGAGGTGATGAACCCTGGCAGGTAGACTATCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCGCACCAAGCAATGCCGCACCTAATCCGCAATAGACGATACCGCGTAACCGTACCAATTAGCCAAGAGTAGAGACCCACAGCCCCGGCAATGGAAGCAATTTGGCTGGCGGCAACCAACCGGAACCCCAAATAGCGCCCATTCCAATAAACGTCAGGTCGATGAGCGCCAGCTGTTTTTTAAATTTGCCCTGGACAGGCCAGAAACATTGGCCGCAGCTCCGCCGTTCTCCTCAGAAGAATAATCATTAGGATCCGGTTACATCCCCATAGATTCTTGTGACCCTCTTTTTTCCACTATTACTAACTTATTGATTTTTATGCTTCTCAGGTGTTTCACTAAAAAAAAGGGTTTTTACGCATTTTTCGCAATTGCTAATTGATAAATATCAGCTTATCCGTATTATCTTACT # Right flank : ATCTCAGCTATCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGTTCAGGGCTAAGCGCTGAACGGCGATGCTGTAACCAGCGCTGTTGCTCACGGTCATTCAAGGTATTCGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCGGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTAGCGCGGTCGGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGCAACCGTGAATGGCTCCGCTTGTGCAAACAGCGCGACCACTCTTTCACGCACCTGTGGGTTTTGACGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //