Array 1 6663-5217 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWUX01000002.1 Halomonas nigrificans strain MBT G8648 NODE_2_length_487344_cov_92.4243, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 6662 33 100.0 34 ................................. TTGACATGATCGGAGTTACTGAGATTGGGCACCC 6595 33 100.0 35 ................................. CGTTTGTGTTTCATTGTTTTTCACTCCCGTCATTG 6527 33 100.0 34 ................................. AGTGTTGACCAAACGTATGTGCTTGAGCTAGGTC 6460 33 100.0 34 ................................. GGAGATGCCTCAGCAACGGCCCTAGCGGTTCCAG 6393 33 100.0 37 ................................. ATTTATATTCGCGTCCCTGAACGGCCCTATCTGGCTC 6323 33 100.0 34 ................................. TGTCCGCCGTGGCGGCAGGTGTGGTTGATCATGA 6256 33 100.0 33 ................................. AAGAACCAAGAGTCATGGGGGCGACTGCTACCG 6190 33 100.0 36 ................................. ACCGCCGTCGAATCACTGTAGCGCAGGGTTAAACCC 6121 33 100.0 34 ................................. AGGGAAGCGTATAGGTCGGCTTGTAGCCATCTGC 6054 33 100.0 33 ................................. CAAAGCCGCCAAGCGCCGCCTACGTATCAATAG 5988 33 100.0 35 ................................. GCAGCTTACAACTACCTGTACAATTGGGTTGATAC 5920 33 100.0 33 ................................. TCTTTAGTGGCAGTCAGTCCATCGGCGCGCCAC 5854 33 100.0 35 ................................. CAGAGCATGTCGTCTAACATTGCATTGGTTTGTGC 5786 33 100.0 33 ................................. AAAGCGAATGGTCTGACGTGGTGGACGGATACA 5720 33 100.0 33 ................................. AAGAGTCAGGATTGCCGCTAACAATACCGGACG 5654 33 100.0 35 ................................. TCTCAGTCAAAGTGGGCGCCGCGCTGGCGCCCTGG 5586 33 100.0 35 ................................. CAGGTTGGCACCGCGCAGGTCGGCACGCTTGCCGC 5518 33 100.0 35 ................................. AACTTGATGTAGGCGCTAAAATCGGCGTGACCTGG 5450 33 100.0 34 ................................. AGTTAAGGATTGCCGCGCTTCGTGCTGCTGACGA 5383 33 100.0 34 ................................. AGGCGATTGGGAGACAAGGCCATGATGCTATCAA 5316 33 100.0 34 ................................. CGTATATGCTCGGCTAGATCGTCCAGCGACTCAC 5249 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 22 33 100.0 34 GTCGCGCCCCGCCCGGGGCGTGCGGATAGAAAC # Left flank : AGCGCACTGAGGGCAATATTATGATGGTACTGGTCAGTTACGATGTCAGCACCTCTTCAGAGGGCGGTGACGGTAGGTTGAGGCGAGTTGCAAAAGCATGTCGAGATGTAGGACAGCGAGTACAATTTTCAGTGTTTGAAATTGAAGTCGATCCCGATCAATGGGTACGCTTTCGTCAACGCCTAATCGACTTGATTGATGACGAGGTGGACAGCTTACGTTTTTACTTCCTAGGCCGAAACTGGAAAAACCGCATCGAGCATATTGGCGCCAAGCCAGCCTTAGATATGAATGGCCCCCTTGTGTTTTAGTCTTTCTCCAGTTTGCGAACCACAAGTGTCTTGCCAAATCCCGCCAGGTTCGCAGCTCTTTAATAAATTGATTTTAATAATAAATTCTTTCGCCCACTTCTTTGTACCACTACAAAATCGTCTGAAACTCAGTGTTTCGCAGTAGCTTGTCTTTTTGCTTTTATTTTTCATGATGTTATAAACAGAACA # Right flank : AAAGCGAATGGTCTGACGTGGTGGACGGATACAGTCGCGCCCCGCCCGGGGCGTGCGGATAGAAACGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCGGATAGAAACAAAGCGAATGGTCTGACGTGGTGGACGGATACAGTCGCGCCCCGCCCGGGGCGTGCGGATAGAAACGTCAGGATAGTCAATGCGTCGGCTGGGTTTGATGGTCGCGCCCCGCCCGGGGCGTGCGGATAGAAACTGCACTTTATCGAAAAAGAATGTCTTGCTAGGGAGTCGCGCCCCGCCCGGGGCGTGCGGATAGAAACGACAGCAAGCAGAGGAAACAGGCCGATGAACACGGTCGCGCCCCGCCCGGGGCGTGCGGATAGAAACTAACACCAGCTCGCCATTATCCCCAGGCGGGCCACGTCGCGCCCCGCCCGGGGCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCCCGGGGCGTGCGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCGCTCGGGGCGTGCGGATAGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.30,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 211422-205272 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWUX01000003.1 Halomonas nigrificans strain MBT G8648 NODE_3_length_297544_cov_112.771, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 211421 28 100.0 32 ............................ ACCACCCGGAACTACCTCACGCACAACGCCGC 211361 28 100.0 32 ............................ ACAGCCGAATGGCTATGATAGCACATCTATTT 211301 28 100.0 32 ............................ ATCCTATGGGGCCGTGACCCCGACGAGCTAAT 211241 28 100.0 32 ............................ TGCCCAACAAAACCAGGGGGGCGCAATAGATC 211181 28 100.0 32 ............................ AAGTGATGACATACGAAAACGCCACTAATGGT 211121 28 100.0 32 ............................ ATTGGATGCCTTTGCCAGCGCCGCCGGATCCA 211061 28 100.0 32 ............................ ATTGCTCGCTGTCATAACATCCAGGCGAGCAA 211001 28 100.0 32 ............................ ATAGCTATTCTTTAGCGCAGATTCGCGCATAC 210941 28 100.0 32 ............................ TCTTTGAGGTCGCCATTCAGAAGCAGGTTGCC 210881 28 100.0 32 ............................ AATGACACCCTCCAAATAAGACGCACCCCCGC 210821 28 100.0 32 ............................ ACCACATGAAAAGCATGTTTAGCAATATACGG 210761 28 100.0 32 ............................ CACAGAGTAATCACCTACAAATCAAAGGCCAC 210701 28 100.0 32 ............................ CGAACGAAAAACTACGCGAGGAAGCCATAAAA 210641 28 100.0 32 ............................ TATATGAGGCGCTCAAGTCTGTCGTTGATACG 210581 28 100.0 32 ............................ ACGTTTCAAGCACGTTTCCAATGGTAAGTAGC 210521 28 100.0 32 ............................ TATACAGGCCGTTTTTGTCGCTGATCGGTTAC 210461 28 100.0 32 ............................ TTGCCGGGTGGCTTTTTTATTTCCTATCGGTT 210401 28 100.0 32 ............................ AATAAAACCATTAGTGGCGTTTTCGTATGTCA 210341 28 100.0 32 ............................ ATCCACAGATTGGTTACAAGGAGGGCCACTAA 210281 28 100.0 32 ............................ ATGAGCGCGCTAGAGCAATACGAATACGACTT 210221 28 100.0 32 ............................ CAGCGTGAGCAGTAATCTTTCATCTTGTGCAC 210161 28 100.0 32 ............................ TAACGCCACCCGTGTTTGAGCAAACGGCAGAG 210101 28 100.0 32 ............................ ATCCACCTCCCCCGGTGGCGACCACATGGCCG 210041 28 100.0 32 ............................ TGGGCGCCGCAATCGGCGTAGCAGCCGTCCTC 209981 28 100.0 32 ............................ CAGAGCAAGCCTGTTATTATGACGATCTTGGG 209921 28 100.0 32 ............................ TACACACACCAGTGCTGCCGCAGCCGCCAAAT 209861 28 100.0 32 ............................ GGTGGGCGTTTGCAATGGTTTATCGAGACATG 209801 28 100.0 32 ............................ TCAAAGAGGAGCTGAGAAAGAGCCTTCTAACC 209741 28 100.0 32 ............................ CACGAGTTCACCGCGCCCGCCATCGTGATAAC 209681 28 100.0 32 ............................ ATCGCGTCTTGCAAATCAAATGCAGGCGCTGA 209621 28 100.0 32 ............................ GTGGCGAACTGTGCCCAGTCGTGGGGCCAATC 209561 28 100.0 32 ............................ GCCAGCGCCGCCTCCCGCTCCTCTAGCTCGGC 209501 28 100.0 32 ............................ GCAGGTGCAATGGCGCTCTGCTGGCAGGGGCG 209441 28 100.0 32 ............................ AGGGCGCGCAGATTAACGACCCAAGCGTCACG 209381 28 100.0 32 ............................ ATCGTGATAACGGGCGCTACGGTAGTGATCGA 209321 28 100.0 32 ............................ GTCAGTGATCCGCACGTTTGAGGGCGCGCCGA 209261 28 100.0 32 ............................ AGCATCTCTAATTGAGTGCTCGTACATAACTA 209201 28 100.0 32 ............................ TGGAGCTGCGCATTCATCTTTAATGCGTACTG 209141 28 100.0 32 ............................ AGCGACTTTCGCTTTCACTGACACGCTGATAC 209081 28 100.0 32 ............................ CGCCCGCAACGACAGTGGGCAACAGCGGCTTG 209021 28 100.0 32 ............................ AACCCCGCCAAAGCGGGGTTATATCCATGTTT 208961 28 100.0 32 ............................ ACGCTGGAAAAGAAGCGTAAAGAGATCAAAGA 208901 28 100.0 32 ............................ TCTCCGTTTTCGTCACAATTGCCGCATGCTGG 208841 28 100.0 32 ............................ AGGGCGAGCTAGTTAAGGTGCTACGCCAGCTT 208781 28 100.0 32 ............................ TCAGTGACTCACGCACGCGGTAGACTGCATCA 208721 28 100.0 32 ............................ AGACTGACGCCGCTCTAGCGGTTCTGCGCGAA 208661 28 100.0 32 ............................ CAGCACTTCGGCATGAAGGTCTCGGAATTCAT 208601 28 100.0 32 ............................ AAAAAGGATCACTAAACCCAAAAAGTTGGTCT 208541 28 100.0 32 ............................ CGCGAAAAATAATTGCATAACGGGGCGTTGTG 208481 28 100.0 32 ............................ TGCATATCGGCGGGATAGCGTGCCCGGGCGCA 208421 28 100.0 32 ............................ GCGAATGCCACAAAGCCCAAGAGCTGAAATAA 208361 28 100.0 32 ............................ CGTGATAGCGCTCTCATACTCAACGTCAACGG 208301 28 100.0 32 ............................ ACCGTCATAAAGTTTGATGCCATATGTAGTGC 208241 28 100.0 32 ............................ GGCTTAGCAACAGCGTCATGCTCACGAGCCAG 208181 28 100.0 32 ............................ ATTAAAGACGATCCTAGCGCGGAGTTTGTGGA 208121 28 100.0 32 ............................ AGTACGCATTTAAAATTGGCAACGGTGATAAA 208061 28 100.0 32 ............................ ACGCCCTCTTCACCGCTCACCCACGCCGCACG 208001 28 100.0 32 ............................ ACTCTCCACGCATGTACGATGGCCACGTATCG 207941 28 100.0 33 ............................ ACGAATTGTTGTCAGGATCATCTATTTCATTAT 207880 28 100.0 32 ............................ ATGGACATTATCATCGCAGAAACCGGCACGAC 207820 28 100.0 32 ............................ ATCGACACACTAAACCAGTTTGGGCGTGGGAA 207760 28 100.0 32 ............................ GACACGCGCTGATACAGCGATTTGCTAACATC 207700 28 100.0 32 ............................ CTTTACAGTGGCCAGAACGCAAGACGTGCACG 207640 28 100.0 32 ............................ GTAAAGCTGCAGAAAGCGTGGAGGCCGATAAG 207580 28 100.0 32 ............................ TGAATCGTGACCGCTAAGGTGCTAATCCCGGC 207520 28 100.0 32 ............................ TCATCAGAAAGAGCCCCGGAGAGCATCAGCTA 207460 28 100.0 32 ............................ GGCGGCGCGGGCTGGTAATCGGGCTTGCCCAC 207400 28 100.0 32 ............................ ACTAATGACAAGGCCAGCGGAAAGCGCTTCCG 207340 28 100.0 32 ............................ GCTGGCCTTGTCATTAGTGGCGCTAACGCTCA 207280 28 100.0 32 ............................ GCGACGAAAATAGCTGGACCATTGAGGTGGTG 207220 28 100.0 32 ............................ AGCAAGCCATCCAGGAACTCATGCTTTGATGT 207160 28 100.0 32 ............................ AATAAAAAGCTGCAGGAAATGGCCACTGCCGG 207100 28 100.0 32 ............................ AGCGCTAATACGCGCCGCCACATCATCCGCAT 207040 28 100.0 32 ............................ AGGGGTAAAAGAGATGACTGATAGCACTACAC 206980 28 100.0 32 ............................ GAACGGAGGCGTTAACAATGAAGATGATTGCC 206920 28 100.0 32 ............................ CAAGGCAAATGGTGCTGCTTCTAGCACATCGC 206860 28 100.0 32 ............................ TGCTTTCGTCACTCGCACGCCTTGCGCCATTT 206800 28 100.0 32 ............................ AGCGAGGTGATTAGGATGGAGCCGTCTGGCAC 206740 28 100.0 32 ............................ TGTTCGACCTTGAGCAGCTGCGCCTTGAATAC 206680 28 100.0 32 ............................ ACGCCCGGCCAGCAACAAGGCGGGGAGCAATA 206620 28 100.0 32 ............................ ATCAACGCTATCACGTGATAGTCGCTCTGCCC 206560 28 100.0 32 ............................ GGTAACGAAATTCCACGGCGGCGGGCGGGTCA 206500 28 100.0 32 ............................ GTCAGGGATGAGTAATATTAATGCGACGGCGG 206440 28 100.0 32 ............................ ACGTCTGTAAATTCGGCGGCGAATGAACGCAC 206380 28 100.0 32 ............................ AGACTCGCCAGATGGGTCAGAGCTAGGAGCAA 206320 28 100.0 32 ............................ CCGCAGAAGAGGGCGTTGGTAAATCACTAATG 206260 28 100.0 33 ............................ CTCGCGGGCAAAGTACCAAGTAGCACCGATCTG 206199 28 100.0 32 ............................ GTAGCCGCCAAAACATCGTTGACGCGGTTAAG 206139 28 100.0 32 ............................ GTAGCCGCCAAAACATCGTTGACGCGGTTAAG 206079 28 100.0 32 ............................ TGCTACTAAACATACGCGTGCCCCGGCAAATT 206019 28 100.0 32 ............................ TGCCCGCAGCACAGTATTTGCCGCATCCTTCA 205959 28 100.0 32 ............................ GCTATGACGTCGCCCTAAAAGCCCAAATGGTG 205899 28 100.0 32 ............................ AGAACGGATACCCCTCATGGCCAACACTCGAC 205839 28 100.0 32 ............................ ACCGTGTACAGCCGCTGTCATCACCACGGTGT 205779 28 100.0 32 ............................ TCACCTGCCAGCGAGTCGCGATCGGTCTCGGA 205719 28 100.0 32 ............................ ATGATTTTCGCTTACTTATTGATAGCGCTTGG 205659 28 100.0 32 ............................ AAGAGATGGAGCCGTTACTTCAATACCGGGTC 205599 28 100.0 32 ............................ ACCAGGTGTGCTTGATCCCGATGAAATGGAAG 205539 28 100.0 32 ............................ AGGCGGCGCTTGCCACCCATCCATTTAATAAA 205479 28 100.0 32 ............................ CAGATTCCTCCTACCTCCTTGCCTGCGTACAT 205419 28 100.0 32 ............................ AGATAAAGACAGCGGGCGCGAATACATCACGC 205359 28 100.0 32 ............................ GCTATCGAGGAGTTTTATGCATGGGGGTATGA 205299 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 103 28 100.0 32 GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Left flank : CGCGTTTGCAGCAGCTAATGAGCGCGAACTGGTTAGCGGGCATGCGTGACCATGCCAAGGTGAGTGAGGTAATCGCTGTTCCTACGAATGCGCAGCATATTAATGTCGCGCGGAAGCAGTTCAATACAGGGAGCGCAAGCCGTGCCAAACGCTATGCCAAGCGGCATAACATTTCAGAAGACGAAGCGCGGACAATTTACGCCAAAGTTGCGGCGCGGCGTATAGAGCTGCCCTTTGTACAGATCAATAGCCGTTCTACCCAGCAGCGATTCAGCCTGTTTATAGAGCACAGCAAGCCTCATGAAAACGCGGTGGCGGGTGCGTTTAACCACTATGGTTTAAGCAGTAACGCTACCGTGCCGTGGTTTTGACCCTTTTTTCTAACGTGAAAATTGGCAACCAATAATCAACCACTTAGCGGTATCGCTCAAAAAAGGGTGATATCGCTTTTTTTGGCTAAAGCTCTTTAACAATCAGCACATTAATTTTGATATGCTCTA # Right flank : ATGCGGCTCAGACGGCACTCGGTCGGGGAGGTGCGTGCAGAGGACTGACTGCACACAGCTGTGGTGCGTTCTCTTTGTGAGGCTAGTTACTCTTTATCTTCCCCTCCGTCTGCCCTGTTGCCGTTAATGTGGGAAAGTTGGCCATGAGTAAGAGTTCAGCTTGCTTCTTCAATGGCAGGGGCTTGTGGTTCGGCCATGCATCGAGGGTGTTGCCTGCTGTGCGGCGAATGCTTTGCTCGGCATTATCCATATGCTCAAGGAAGCGTTCAGTGGTCAGAATCTCGCCATAGATTCGGCTAAAGGAGTAGATGTGAAAGCCGCTCTGTGTCAGCTCTCGTGCCATTGTTCGGGCTTGCTCGATCAGCGCCAGGGCCTGTCGGGCCAGGCCTGCGGTGCGTTGAGGGGTGAAGTCCCACAGGGCGACAGCGGCCGTATAGCACAAGGTTGGTCGATAGGCGCGCAGGGCAATGGCATCGTTATGGAACGTGATTTTGTCCAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGCTGCCGCCCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCGCTGCCGCCCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 43-5930 **** Predicted by CRISPRDetect 2.4 *** >NZ_NWUX01000043.1 Halomonas nigrificans strain MBT G8648 NODE_43_length_9899_cov_79.0277, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 43 33 100.0 35 ................................. ACTGCGAACCGGCGTTATCTGATACCCATCCCAAC 111 33 100.0 36 ................................. ATCGAAAATGACGCCAGACCTATCAGGCGTCAAAAA 180 33 100.0 33 ................................. GATGGCGCGATGTATTACTACCTGCCGCGTGGA 246 33 100.0 36 ................................. GCATGCGGTCTATGTTTCTGCTTGGCAGTGTGAACG 315 33 100.0 37 ................................. TTTCCTTATGCCCGACGTGCCCGACGTTAGTCAGCGC 385 33 100.0 35 ................................. GCCCACCATCGTTGATCCAGTATTGGGAAACTTGA 453 33 100.0 37 ................................. CAGGTTCGAATCCTGGGTGGGGTGCCAAGGGCCGCTA 523 33 100.0 33 ................................. TGACCACTCTACCACCACCGTTGCATTTCTGAG 589 33 100.0 34 ................................. GCAGCGAGCTGTATAACGATGACAGCCCTGTTTT 656 33 100.0 35 ................................. TCTGGTTGCACGAGATCACGTTGGCCCTGGGGAAT 724 33 100.0 34 ................................. AAAGTAGCGAGCAAGCAGCTCGCGTCGCTTACAG 791 33 100.0 36 ................................. ACTCTGGCGGCGTATTAATGTATCAACACCCGCTAC 860 33 100.0 35 ................................. ATCAATCAAAACACTAACTTGCGAACATTTGCAAT 928 33 100.0 35 ................................. TAGCCTTGCTTTTAGTGAGCCAAGTATAGGATTTC 996 33 100.0 36 ................................. AAGAGCCTGTACCCAAGATGCGCGCAATGACCATTG 1065 33 100.0 36 ................................. CGCCACCTCCTGCGCACTCATGACCTGCCCATGCTT 1134 33 100.0 33 ................................. CGCACCACTAAGCCACCTTGCTGGGTGGCTTTT 1200 33 100.0 35 ................................. AGCCAAAGGCGTATTATCGGCGAGTTAAGCAGGTG 1268 33 100.0 38 ................................. ATCACCCGGCACTGGCGGAATGATGCGGTACTCCAGTC 1339 33 100.0 35 ................................. CCATCGTCACGCGGTGGCGCGACCTCATCAATCAA 1407 33 100.0 35 ................................. GTAAACAACGGCATGCCGTGCGCTACTCGGTAGCG 1475 33 100.0 36 ................................. ATCTTGACGTTTTCCAGCATGAATTTAACGTCAGGA 1544 33 100.0 36 ................................. ACCAGTTGCCGACCAAGCCCGGCTCGATGTTCATGG 1613 33 100.0 35 ................................. TAAGCCATACCGCCATAAGGCCGCTACGGCGGCCT 1681 33 100.0 33 ................................. AACGTCTAATACAAACTCTATCGCCGATGGTGT 1747 33 100.0 35 ................................. AACCACATACGGCATGGGCGGGTTTTATGACGCTG 1815 33 100.0 34 ................................. AGCAATTTTGCAAACTCTTTTATGATCCAGCGAA 1882 33 100.0 35 ................................. ATGTTATAGCCTCAAGTCGCTGGGTTCATGATTAG 1950 33 100.0 35 ................................. AGCAACATCATTCATCTCTTCGATGAAGCGGTCAT 2018 33 100.0 36 ................................. TGATCGAGAAAGAACGATTGAAGTACAGTATCGAAG 2087 33 100.0 33 ................................. TGGCGCTATACGATAGGTTTTCTTCTAACCTGT 2153 33 100.0 34 ................................. AATAACGCCAGCACTAACGCCATTCGCGCGGTAC 2220 33 100.0 35 ................................. TAATAGCTGTGCCTGACCGTTAGTCAGCACCCCTT 2288 33 100.0 35 ................................. TACTGTTTCGCGCACCCATGTTTGCTCGCTGACAA 2356 33 100.0 34 ................................. ATCAATCGCTAGCCCGTAATCGCGTATCTCCTGC 2423 33 100.0 33 ................................. GCTGTGGGTTAATCGTCATCATCGGAATCACCC 2489 33 100.0 36 ................................. GTTCTGTATAGCCATGATTAGCCAGCACTAGCTTAA 2558 33 100.0 36 ................................. GTTCAACTCATCCATGCCGACGCCATACGACCGGGC 2627 33 100.0 35 ................................. ACTCAGATGAACGCCCAGGTTTTTATCAGCTTGAA 2695 33 100.0 35 ................................. CGATTGTGGCCACTGCGTCTCATGCCAGCGCTATA 2763 33 100.0 35 ................................. AAATAATTTTGATTTTGGTAATAACACGATTTATT 2831 33 100.0 36 ................................. ATTGCGGCAGGGTGCGCGAATGAGTGGGATGAAGAC 2900 33 100.0 34 ................................. TAATACACCAACTTGGAAGGTGTGGCGAGGAATC 2967 33 100.0 37 ................................. GTGACCATTCACGCTTGTATTGATAGCCATCACCCGT 3037 33 100.0 34 ................................. AGGGCGATAGTCAACTGAAGATAGCTAAAGCCGG 3104 33 100.0 35 ................................. TCGCATCATCCGGGAAACCGCCAGCTTTGAAGACG 3172 33 100.0 35 ................................. AACGCTTACTCCTACGTCAGCATGATGGCTCGTTC 3240 33 100.0 36 ................................. CAAATGCGGTGCCCCAGTGGTCTACTACTATCCCCG 3309 33 100.0 33 ................................. TGCCCCAGAAAATGCAGGGCACCGTCGCGCCAT 3375 33 100.0 35 ................................. GTCATCAAAGTCCTGATACTGCCCAGGGTCGGGCG 3443 33 100.0 37 ................................. ATCTTAATGGCGGGCAGCCTGCGCACCAACGTTGAGC 3513 33 100.0 36 ................................. GCCCACTATGCGCAATAGAGAATATGTCACTAGGAG 3582 33 100.0 34 ................................. CGTACTTAGCGGCTAGCCAGCTCTTAGGGCCTGC 3649 33 100.0 34 ................................. AAAGTGGTGGCTGCTTGCAGTGGCAATCTGCTCG 3716 33 100.0 35 ................................. CATATCGACGGCGATATTAGCAGCGTGGTCGACCA 3784 33 100.0 34 ................................. CATTGCCTAGATCTCCCTGCTCGCACACCGGCAA 3851 33 100.0 37 ................................. CCGAGCAAGTTAGGCTGATTACGGAAGATGTACGGTT 3921 33 100.0 35 ................................. ATGCAATGCGAAGATGGCGAGCTGCAGCAGATAAC 3989 33 100.0 35 ................................. ATGCCCGCGACCGCCCGCGACCTCGGCACCACGAC 4057 33 100.0 36 ................................. TCTGCTTCGGTATCGCAGCGGCTGCGCCTCTCTGGG 4126 33 100.0 37 ................................. ACTTTCGTAGCACGCGAGCAACTAGAACGGTACAATG 4196 33 100.0 38 ................................. TAGCTCTATCTCCCACGGGGTAAAATCAGGATTTTGTC 4267 33 100.0 35 ................................. AACAAGCCTCTCCACGCTGGCGCGCAGGCAGCCTG 4335 33 100.0 35 ................................. GATGCCTAGTAACGCGGCGTTGATTGGCCAAGAGC 4403 33 100.0 36 ................................. AAACCGTATTCGGCTGGGGTGATGGCGGACAGCCAA 4472 33 100.0 36 ................................. TCCGGCACATCGTGCAAACATACCCAGCAGCGCTGT 4541 33 100.0 33 ................................. TGATCACCCTGCTTGAGCGCTTCGCCGCGCTTG 4607 33 100.0 35 ................................. GTCATGTAGTCGTTTGCCTGGATGGTCTGTACTGC 4675 33 100.0 33 ................................. CAGTCTTTCGATGGTAGGCGAACGATCATGCAG 4741 33 100.0 36 ................................. CTGCACGAACAGGAGCGGGCCGTACATCGATCCATC 4810 33 100.0 34 ................................. GTCCATTGCGCTCTGCAATCTGCGCAGCGGTAAG 4877 33 100.0 34 ................................. GAGTCGGAGTCCGTTTTCTCCCCCCACTGGCTGT 4944 33 100.0 34 ................................. TAGGCGAGTCTTTCCTGCAGACGACTACCGCCAT 5011 33 100.0 36 ................................. AACGCGATAAGCGCGGCAGCCGGCGCAGCGGGAGGC 5080 33 100.0 35 ................................. ACGAAGATATCGAAGATCAGCGAGCTGTCAATATT 5148 33 100.0 36 ................................. TGCACTCGCTTGACTAATTTCTCGTATGATTTTGAC 5217 33 100.0 36 ................................. TGCAGCGGGTACGCCAGCCAACAGGTCAGCCAATGC 5286 33 100.0 33 ................................. AACTCCCAGCTTACGAAAAGCAATCACTATTGA 5352 33 100.0 35 ................................. TCGACCAGGAGTCATCCCCTCAATGGAAATGGTGG 5420 33 100.0 35 ................................. CGACAGTATCCGATGAGACGACTCCGATACGGACC 5488 33 100.0 37 ................................. TCCTATTCAGCGCCAATATGGAGAGCTGAAAATGGTC 5558 33 100.0 34 ................................. CTCCTCATTTTGTCACGTCGAACGTCAACGCTAC 5625 33 100.0 35 ................................. TGTAATAGGGTTGACAAGTGCCACACTGTGAAGTG 5693 33 100.0 35 ................................. CGACAGTATCCGATGAGACGACTCCGATACGGACC 5761 33 100.0 37 ................................. TCCTATTCAGCGCCAATATGGAGAGCTGAAAATGGTC 5831 33 100.0 34 ................................. CTCCTCATTTTGTCACGTCGAACGTCAACGCTAC 5898 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 87 33 100.0 35 GTCGCGCCCCGCCCGGGGCGTGCGGATAGAAAC # Left flank : TAGAAACGCTGAGGATGGCGTGCGCGTCGGGGTTGTTGCGAAG # Right flank : CTGTAATAGGGTTGACAAGTGCCACACTGTGAAGTGGTCGCGCCCCGCCCGGGGCGTGCGGATAGAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGATAGAAACTGTAATAGGGTTGACAAGTGCCACACTGTGAAGTGGTCGCGCCCCGCCCGGGGCGTGCGGATAGAAACAGTACACCGTAGAGCGCAAAGTGGTGTTGCTGGCCGTCGCGCCCCGCCCGGGGCACGTAGATAGAAACATGATAAACAGCTGATGGTGTTCGACCACGGAGTGCCCGCTCACCGCTAAGAGTGTGCCTAGCAAATGCTAGCCCTCTTAACCCCAATAAGGCCGTGCACTATTACCACTAATGCAAATTATGCCGCTACGGCGTAGTTAGATACATAAATCGCCTCGTGCAAGTGTATAAGATGTTTTTAGATGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCCCGGGGCGTGCGGATAGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCTCGGGGCGTGCGGATAGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.60,-10.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //