Array 1 249138-253065 **** Predicted by CRISPRDetect 2.4 *** >NZ_UIZH01000005.1 Klebsiella pneumoniae strain EuSCAPE_PT004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 249138 29 100.0 30 ............................. CTCACGCTGATACCTCGGAAAAAGACGGGC 249197 29 96.6 32 .G........................... GCGGGCTGGGTTTTGTCGACTCTGCCGATCCG 249258 29 100.0 32 ............................. TAATATTGATAAATTCGATGAAGTAACCGGAA 249319 29 96.6 32 ............................A TCGAAGTACCAGCGCCGCACCGTGTTTTTTGC 249380 29 100.0 32 ............................. GTGGCCGGTGCTGCCAGTACGGTTACCGAAGT 249441 29 100.0 32 ............................. CATCCACGCTTCTGGCCACCAGGCAGATAATC 249502 29 100.0 32 ............................. GTGCTCCTCTTCCAGATACTGGGCCAGGAGCT 249563 29 100.0 32 ............................. TACAGGACGACAGCATCCTGGAACATTTCGAC 249624 29 100.0 32 ............................. CTCTGCGTGTGCGCCTCCGCTACGAGGTGACG 249685 29 100.0 32 ............................. TGAATATTCATTTACTAAATTAGAGACAATTC 249746 29 100.0 32 ............................. CGGATTAAACGTAAGGCCGCGCGCTGGCGTAA 249807 29 100.0 32 ............................. GTGGTTTGTTACCGTGTTGTGTGGCAAAAAGC 249868 29 96.6 32 A............................ GAACGGAGGAATATAAGAACAAAAGCCCGCAG 249929 29 100.0 32 ............................. TAAACCGCTGGCGTGGTCAGTTGCGTGGCGGT 249990 29 100.0 32 ............................. GGCGCCGGCCTGATCACTATCGGGTAACGGTG 250051 29 100.0 32 ............................. GGCCTGAACCAGAGCATGATCTACACCTGGAA 250112 29 100.0 32 ............................. ATTGGGTAGAGCAGGCGAACGGATGTCTTTTT 250173 29 100.0 32 ............................. TTTTCACGGTCGAAGTTGTGCATGCTTTCTGC 250234 29 100.0 32 ............................. TCGACGCCCCGGTGTGGGAAGACTTTGGCACC 250295 29 100.0 32 ............................. CAGCGCATACGGGTTAAACCGGATCACCTCTT 250356 29 100.0 32 ............................. ACATAGCGCCCGATACGCAGCGCCAGCGGGTA 250417 29 100.0 32 ............................. GATCGATCGTTATTGTTGAACCGCACTATGGT 250478 29 100.0 32 ............................. CTTTTAATAATATCATCGGCAATGTCCTTATC 250539 29 100.0 32 ............................. CGGGACCGGATCCGCGTGGGCGACCAGGATTA 250600 29 100.0 32 ............................. CACCGATATTCAGTGCGCCAACGCCATAGCAA 250661 29 100.0 32 ............................. CCGAGGTTTTTCATACCTTCGGCAGTCGTAGA 250722 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 250783 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 250844 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 250905 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 250966 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 251027 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 251088 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 251149 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 251210 29 100.0 32 ............................. TATACAGTATTATCATAGCGAATTCCCATCGG 251271 29 100.0 32 ............................. GTTGGTAATTACTGCTGTGTGTTACGGATAAA 251332 29 100.0 32 ............................. GCACCAACGTTTACGGTGCGGTGGTGAAACAA 251393 29 100.0 32 ............................. TGCCGGACGTTGTACCTGTGAGTTAATTCTTC 251454 29 100.0 32 ............................. CGATAACCGGGCGTTTCGACTGAACTCACCTC 251515 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 251576 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 251637 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 251698 29 100.0 32 ............................. TGGGTAGAGGTTAACTGGTTATTGGTCATTGA 251759 29 96.6 32 ........T.................... ATCGCGGAGGCCTTCGGTGTGTCTCTTTCCTG 251820 29 100.0 32 ............................. CCGTTGTCAATATCTCCCGGCGTCCGCGCCAG 251881 29 100.0 32 ............................. CTGCAGGTAAATGACTGGATGGGGGAAGAGGT 251942 29 100.0 32 ............................. CACGTCCGGAAACCACGGGTTATCCGTGTAAT 252003 29 100.0 32 ............................. CAGAGGTCCTTATCTTTTCAACGTCAAAGTCG 252064 29 100.0 32 ............................. GCAATCCCAGAGCGCGAATATCTTGGGCTCTC 252125 29 100.0 32 ............................. GACATGGCGCGCGAGTTTATCGACGCCTGCGC 252186 29 100.0 32 ............................. GGGATGAGCGTTTTCCGGTGGATTCTGATGTG 252247 29 100.0 32 ............................. TCCCCTACCACCCACTGAGCAAACTGGTAGCA 252308 29 100.0 32 ............................. CAGATACCAACGGTTACTACGGCAATCAGCAC 252369 29 100.0 32 ............................. AAGGTTGACCTGTTGTCGGCAACCATCGAGCC 252430 29 96.6 32 .........A................... GAGGCGCGCGTTGTCGTCGGTGAGATGCGCGA 252491 29 96.6 32 .....A....................... GCCATTCGTGCTTCTTCGCTTTGCTGCATCCA 252552 29 100.0 32 ............................. GAATATAAAACCAGATTCCATATAGCCCTGTG 252613 29 100.0 32 ............................. CCGGTTACGGGGATGACTGCAATTCGCTCCTG 252674 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 252735 29 100.0 32 ............................. GCGGCGTCAGGTGTGTGGCAGAAAATTATTGC 252796 29 100.0 32 ............................. TCGTCTGAGTTCCGGCTTACGCCGTGCCGACA 252857 29 100.0 32 ............................. GTGATCGTCATGGATATCACTGCCGTTCCGTC 252918 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 252979 29 96.6 29 ............T................ GGGTTCACTTGGGTGAAACTGAACTAACT 253037 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 65 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AGGTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTA # Right flank : CGTCCACTAACGTTATCGATCCTGAGAGTGGGCACGAAAGATTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //