Array 1 9558-9289 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKAEI010000002.1 Escherichia marmotae isolate HUSEmarmC2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 9557 28 100.0 32 ............................ AGATCCAGATTTTTATCACGCGATTTCAGAGA 9497 28 100.0 32 ............................ CAGCGCTGGCGGTGGATGATGCGGGGTAAGTT 9437 28 100.0 32 ............................ TGAACGGCACATTTTTGCGCCTCTGGTAGAAC 9377 28 100.0 33 ............................ TAAACAGCAACTACTTTAAGATTGAAATATTAC 9316 28 89.3 0 ....................T..TT... | ========== ====== ====== ====== ============================ ================================= ================== 5 28 97.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ACGTGTTTTTTATTTAAGGCGCATTAATGCGAAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTTTTGCTGCCTTACTACATGGGGGCAACGGGGCGCTACTATAGGGAGTTGGAGCAAAACGGTCAAGAAGAATTTATTTAGATTGATTTGTTTGGTTACGCAATGAACACACGATTCATTCGCCCGAGATTATGGTCGTATGCGTTCTGATCAATTGTTTATCAAAAGCTACGAGGGAAATATGAGAGTGAAGAAATACCAATCGACCCATTTTTTTAGAGTGACATGTAACTCATTGATTTTGTTTATTACTATTTTGACGTCTCGAAAAAGGGTATGAACCTATGATTTTGTGATTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTTCA # Right flank : ATCCACACCCCAATATTTATTTTCTTCCTTAATCCCGGGCGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCGTCAGGCGGCAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTGTTAGGTAACGTTTCAAGAACAGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTTGGCACATAACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAACGGTGAGATAAA # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 25527-23815 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKAEI010000002.1 Escherichia marmotae isolate HUSEmarmC2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25526 28 100.0 32 ............................ AATAGGGCTGAGCAAAGCCTCCAAGCTGTCCA 25466 28 100.0 32 ............................ GAGGGAATACGGGGAAACGCGGTAACACCTGT 25406 28 100.0 33 ............................ GCAATGCGCGTCGCATGTGGCGGTGGTGGGCAG 25345 28 100.0 32 ............................ GTTGTGCCCCAAGTCTGAAGGGGCGTTATGTT 25285 28 100.0 32 ............................ CCATCCTGATGATGGATGTGGCACAGGGGAAT 25225 28 100.0 32 ............................ ACGATGTGATAAAACTCATTACTCCCTGTGCA 25165 28 100.0 32 ............................ ACTTGTTCAGCTCACATAAAGCTGGCGAGCCG 25105 28 100.0 32 ............................ AGCATCCTGTGCCACTGACGCCATCGTTTCAG 25045 28 100.0 32 ............................ ACTCAGGATGCCGCTGTGCAAAGCATAATAAA 24985 28 100.0 32 ............................ AGTTTCAGTAGCTCAGCCTCAATCCTCCCCGC 24925 28 100.0 32 ............................ TGTCGTTTCGTGAGAACGTCTACGACGTAGAA 24865 28 100.0 32 ............................ GCTAGCAGTGACAACGTAAACGCCGGGCAGGA 24805 28 100.0 32 ............................ CCTCAATCGAAAACACGCCGTTACCGTGGTTT 24745 28 100.0 32 ............................ CGGATTTCTGCGCGAAGATTTTTAATTGCTGC 24685 28 100.0 32 ............................ AGCAACAAAAAACCTGATGACCGGATGACACA 24625 28 100.0 32 ............................ GCGCCACCCAGGTGGCCCGACACCGATTGAAT 24565 28 100.0 32 ............................ CACATATCTGATTAAATATCACGACACGGCGA 24505 28 100.0 33 ............................ ACTTCCATGTGGCGGTTTTGCCACATCCATAGT 24444 28 100.0 32 ............................ ATCATAAGCAGGTGTTACGCGTCTCCTACAAA 24384 28 100.0 33 ............................ AAAAATTACACACGTAAAACTATCGGGAACGCA 24323 28 100.0 32 ............................ CAGCGCAGCACCGGCACAAAAACGCATTGCGC 24263 28 100.0 32 ............................ ACTGCTGGCCCGACTGTAGACGGGCGGGAAAT 24203 28 100.0 32 ............................ ATTTCATTGATAAAGGAGTTATAGGCGACTTC 24143 28 100.0 32 ............................ GAAATGATGAGTCGAGGACGGCGACATCATCA 24083 28 100.0 32 ............................ ACGGGCGCGGCGGCAGAGTGTCCGATTAAATA 24023 28 100.0 32 ............................ AGTTCTCGACTGATGCAACTCATTGCCCCCTC 23963 28 100.0 32 ............................ TGTACCAGCACTTGTCGCAGCGGGTGCTACGG 23903 28 100.0 32 ............................ GCACTTATGGCGAGTAACAAAGGTTGAAATGT 23843 28 92.9 0 ....................T...C... | C [23820] ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GAGTTGCAGGTTCAACTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCACGTAACTGGCTGGCTGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCTCGCGTCATCCAGGACAACCTGAAGAAACCGCTCGCTAACGAACTGCTGTTTGGCTCGCTGGTGGATGGCGGTCAGGTCACTGTTGCGCTGGATAAAGAGAAAAATGAGCTGACCTACGGGTTCCAGAGTGCACAAAAGCACAAAGCGGAAGCAGCGCATTAATCTGGGGTCGTGAAGCCTTTTAAGTAGGTTGATAAAGTCCGTAATCTCGTAAGAGGTTACGGATTTTTTTGTTTGTGAGGTGGGGCGGTAAAAACCCTATTTTTGAGGGCGAAGGTAAGTTATTGATAATTAATGCTGCTGGAAGGCAAGGATAAAAAAGGGGCTGGACAAGGAATTTTGCTGGTTTCGCTTTATTAACAATGGGCTAAGCGTGTAGTATTTGA # Right flank : TACGATGATGGCAGAAATTTAGCTGCGTTATGGCGCTCTCAACTCCGAACCATTAGCTGTGACACACAATAACAATTGTGATAATTGCGACGAGAATCAATTTCTCACACAGAAATCAATGCTGTACTAATCCTAACTCCTTCAAATAAAAATAATCACAGGATGTGTTTATGTCTTCAAATTACCTTACTCCTTCTGATCTCAAAACCATTCTCCACTCCAGGCGTGCCAATATTTATTATCTGGAAAAATGCCGGGTGCAGGTGAATGGTGGGCGAGTGGAGTATGTCACCAGTGAAGGCAAGGGGTCGTATTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGTTGGGGATGGGAACGTCCGTTACCCAGGCGGCGATGCGTGAATTTGCCCATGCTGGAGTGATGGTGGGTTTTTGTGGTACGGATGGCACGCCGCTGTATTCGGCAAATGAAGTTGATGTTGATGTCTCCTGGCTCAGTCCGCAAAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //