Array 1 474096-475038 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKJJ01000001.1 Gardnerella vaginalis strain UMB0032B .16933_8_57.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 474096 28 100.0 33 ............................ CCAAATACAAAAGATAGAATTTACAAATATTGT 474157 28 100.0 33 ............................ CAATTCTATCAAAATAATCGCCGTCATGAATAC 474218 28 100.0 33 ............................ TCCTTACACACAATACACGCAAGTTTTTGACTA 474279 28 100.0 33 ............................ TTGTAAACTCCTGTGAAAAGCTTTTCTCTTGTC 474340 28 100.0 33 ............................ CGTAGGATAAATAGGAAAAAATAAAAAGGTACT 474401 28 100.0 33 ............................ CATTTACACCGTCTACAAGATATGGATTATATA 474462 28 100.0 33 ............................ CTTAATACCTTCTAAGTTTCCAGAAGATGAGTA 474523 28 100.0 33 ............................ TTAGCTTATAAGGCATTAAATGACAAAATCAAT 474584 28 100.0 33 ............................ TCATAAAAAGGCGCATTATAAAAGAGAATCGCG 474645 28 100.0 33 ............................ TGTGAGCGGTTTCGTCAGGATATCCGCAAGCGT 474706 28 100.0 33 ............................ TGATTTTAGACGCGAGTTTATTCGACACATGAA 474767 28 100.0 33 ............................ CGAAAGCGGAGTATCACCTGACGCTAGAAACAA 474828 28 100.0 33 ............................ TATACACCTGATTTTGATGAGTTTCACAGTATC 474889 28 100.0 33 ............................ TCGCCAACCGTTATTTCCAATTGATAGCCAATG 474950 28 100.0 33 ............................ TCAGTGTCACCACCCGTAGGTTTCACCTTATCA 475011 28 96.4 0 ..............C............. | ========== ====== ====== ====== ============================ ================================= ================== 16 28 99.8 33 GTATTTCCCGCATAGGCGGGGGTGATCC # Left flank : TTTATTCCTAATGAAATTATTGAGCTAACTGGTATTACATCCAACATGCTTGAATCTTATGGTGTCGGATTAGATTTAGCATTAAGAGAATTTATTGATTTTGTGGGAAAATTACCATTATTAGGATATAACGTATCGTTTGATATTGGATTTTTTAATTCGGCTTTATTCTCATTAGATGAGAAACTCAGCAGTGCTTTTTCTGTTAATAAAGTTATTGATATTTCACGTTTTGTGAAGCATGATAGGAGGTTTTTGAAAAATTATCAGTTGAAGACTGTTCTGCATGAGTATAACATTTCTGAGTCAGTTCCTCATAGAGCTCTCCTGGATGCTAGGCTAACGGCGCGTCTTGTTCTTAATTTGACAGAATTGTTAAAGTTTCTTTCATAAGGTTATAATTTTGAAGGATTGTGTGCAACAATGGGTTAATTTTGAAAAGTAAATAGTTTTTACTATTTAGTCTTGGAAAAATAGCTATTTTATTGGGATTTTTAAGT # Right flank : CTAAGCACCCTAAAAACGCGGCGGGTATAACCACGTCTTTTCCGCATACGCTGGATAAAACCTACATGTGCGGCAAGTGTGGTTGTAGTAGTCTAGTGGTGGATATGATAGCGGACGCACAAGTGGAGGTTAAAACGCTACGCGGCGTATTATATCGCGCGCGTTGATTGTTTTTATAATAGGGTAGGCAAATAAAAACTTGCCTACCCCTTATTTTTACTGTTGATTGTTTGACTCTGCTTTAGCTGCTTTACTAACCGCCTCTTGCAGCGCTTGCCATGATGACGGCAGCTCTACAGGGCGATGTGGGCGGCGCGCAGCCCAATCACGTATAATGTCATAATCCCACGCAGGCTTTGCTGTTAGCGCACCAACTGAGTGCGTTGGTAGTGGGATCAGACCGCGGAGGCTACTCGCATCTTGACCATCTAAGGCTGCACGCCTAGATCGCACCAAATACTGGCGCATAGACTCGTAGCCGACGCCAAGAAGACGCGCAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTTCCCGCATAGGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.80,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 806923-806373 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKJJ01000001.1 Gardnerella vaginalis strain UMB0032B .16933_8_57.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================= ================== 806922 36 100.0 28 .................................... TAATAGCGCTTATGGCGATACCGCGTAT 806858 36 100.0 28 .................................... CGAACAGTCTGATACTGATTCCCAGCAA 806794 36 100.0 29 .................................... ATACTTCACCTCTTATCAGCTTTTCCATT 806729 36 100.0 28 .................................... CAATCCATTGAGTTGCTTTATTATCTTC 806665 36 100.0 29 .................................... CTCAAGCATCGGTGGAATCATATTTCTAT 806600 36 100.0 28 .................................... CGTGTATCGTAGGCTTGCTGACGAATTA 806536 36 100.0 28 .................................... TTGTTGAGCGTCCTGTTTATGATGCTGG 806472 36 100.0 28 .................................... TAGCGTCTGCTGCTGACCGTGGCTTGTT 806408 36 97.2 0 .G.................................. | ========== ====== ====== ====== ==================================== ============================= ================== 9 36 99.7 28 CAATTATATCAAGAATGGTAGAAGCTAATTTTCAAC # Left flank : TAATGGTTCTGGACATACAATTCCTAGCGCTTTATCTGATTTAGCTCAATCATATGGTATTTATGTGGAAAAAGACATGGAAGACTTTCGAGTACCACAATTTGTAAGGAGTGAATTATGAAAGTCGATGAGGACAGTGGTGGCATGTGGTGTTTAGTAATGTTTGATTTACCAGTGAAAACAAAAGTAGAGCGTCACGCTGCAACTGTATTTCGCAATATGCTGCTTGATATGGGGTATGCAATGGTACAATTTTCTGTGTATGTCCGTTATAGCCCCACTCAAACAGGAAATAGAACTTCAGTAAAAATAATTAAGGATAATCTTCCTCCACGTGGATCAATACGCATTTTACATGTCAGTGATCATCAATGGTCATCTGCACAACGTTATTACAATGCCAGGCAAGAAAAGAAAGAGGAGGCTCCCGATATTGCTATGCTTTTTTAATCATAAAATGTCTTATAATGGTTGGAATTCTACCATTCTTGATGATATAC # Right flank : CAATAAATAAAAACGGGGAAGCTGGAAAGCTTCCCCTGCAGTAATAATCATTAAAACTGCTGAGCAATCAAACTGGATAACAAGTCCAGTCTTATTGAAAATTAGCACTTCTAATATATCATCTTTAAGAAATAAAAAACAAGTGGACTTTTTTAAGTTTTGTTAAAATATTTGAAAAATTAACATATCAATGTGATTGATGGATAGTGTAGTTGAAAATGTTATTACTTTTCGAATGCATGTGTTTTCTAAAAACTGCATTCGTGAAATGTATGTATGTAGGTTTTATGTAAACAGCATCCATATATTCATAATGGGAACGTTACTAAGGTAGCATTCCCATTATGTTTTTTATAATATGCGACTTATATGCGATTTACCAAATGTGTACGCGCTCGCTTGGAGCAAGCCACATCTCGTCGCCGTCTTTAACGTCGAAAGCATCGTAGAACAAGTCAACGTTGCGTGCAATGCCATTAGTGCGGCATTCTGCAGGGGAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAATTATATCAAGAATGGTAGAAGCTAATTTTCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //