Array 1 3635-3907 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSKZ01000054.1 Escherichia coli strain upec-213 upec-213_ctg_1207, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3635 29 100.0 32 ............................. CTGTGGTTCTGCTCGAATAACAAAGTGCCATC 3696 29 100.0 32 ............................. CGTGCCGTGCTGGTGGGCGGCACAGAACTGGA 3757 29 100.0 32 ............................. CGTTTAGCTCCGCAATGTTGGATATCACTGAT 3818 29 96.6 32 ............T................ TATGGGAAACAGTAGCAACTGGCACACTGGCA 3879 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACACTGACCGATGATAAACCGCGAGTCATTGCGCTGCAGCCGATTAGCCAAAAGGAAGATGCTACTCGTTTATGTATCGATACGTGCATTGCGCGCAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTCTTTGTCGCCTCTAAAAAACCTCCATTTTGCCCATCCTGGACTAATCATTATCATTTTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTACGTCGGAGTTTGGTGGATTTTAGTTGGTATAGAATTACTTTAAATATTTGGCTTTTCAATCAATGAATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGTTTCTGTTAAGTTGGTAGATTGTGACTGACTTAAAAAATCAATAATTAATAATAGGTTATGTTTAGT # Right flank : ACCATATAACCCGTAATCTCTTTCTCAAGTTTTTATATTAGCAGTACTCGTAATAAGCAACATATCCACGTAACCCCTCATGTTTAAAATAGCTCTCCATATATGAGAAGTTCACAATTATCGATACAAAAAATCAAATTTAATTAAAGTGTTAGTTGTATGATACTTAATCCATTAAGAAATTTTAATCTATTATTTTTTTAAATTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGCTTAAGTAATAAATCTGGAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATAGGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAATGAAAATTGATAAAGTACGGTTTGCGTTGTCTTTTATTCTAAGGACATCGAGTGTAGTTAATATTCCTTGTAACAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29941-31739 **** Predicted by CRISPRDetect 2.4 *** >NZ_JSKZ01000054.1 Escherichia coli strain upec-213 upec-213_ctg_1207, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 29941 29 100.0 32 ............................. AACTCTTCCAGCATCCGAGACGCGTTATGCCG 30002 29 100.0 32 ............................. CGTACAGTATAACCTCATCCGGGAGCGTCTCA 30063 29 100.0 32 ............................. TATCAGCACCATGTGCCGTGCCGTTTAACAAC 30124 29 100.0 32 ............................. ATTTTGGTGGCGGGGGTGACTGGGGGAATACT 30185 29 100.0 32 ............................. CCTGAAAAAATATAACGCCACGTTACCGGCGA 30246 29 100.0 32 ............................. GCGCGGTCGCTGCAATTATGGGCGTTGGCCGC 30307 29 100.0 32 ............................. GTTTATCCTCATACGCATAGGCGTTAGAAAGC 30368 29 100.0 32 ............................. ATATCCGTAATCATTTTGGGAAAGTAGTAACA 30429 29 100.0 32 ............................. GCAGCAAAAGCCATCGACGGTCAAGAAAATCC 30490 29 100.0 32 ............................. GTGGTCAATCTACTCGTAGCTGAGGCGATCAA 30551 29 100.0 32 ............................. CCCAATACCCCTGGGTAAGTACCTGCCAGATG 30612 29 100.0 32 ............................. GCGCAGGTTGGATATATGAGTGCCGCAAACTC 30673 29 100.0 32 ............................. CGCGGGCATCTCTACTGGCACTGCTGCGAAGA 30734 29 100.0 32 ............................. CCTCATTCAGTAATTATTACACCAAAACAGAG 30795 29 100.0 32 ............................. CTGTGGTTCTGCTCGAATAACAAAGTGCCATC 30856 29 100.0 32 ............................. ATTTAATACCAGACGCAGAGTGCCACACAGGT 30917 29 100.0 32 ............................. TACAATTACATGTGCAACGTTGAGGCTTGGGC 30978 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 31039 29 100.0 33 ............................. CTATTTTTGCGGATGAATACGAGCGCCGTTGGC 31101 29 100.0 32 ............................. CGATCGCGCTCTTTAATTAGCTGAGCGATTTG 31162 29 100.0 32 ............................. CAGATCACGTCGCACCCGGCACGGAGTTACCG 31223 29 100.0 32 ............................. CGCCGCATTGCTCGTAAATATCCTGAAGTTGC 31284 29 100.0 32 ............................. ACTATCACCGACGTTATGATGGCCCAGGGATT 31345 29 100.0 32 ............................. CCATGCGCAGCGATTCAAGTCGGCGCGCGTCA 31406 29 100.0 32 ............................. AATCCAGACAATTGCTGACTTTCGGCGGCAGT 31467 29 100.0 32 ............................. AACTGACAGGCGATATTACATACAAACCATCA 31528 29 100.0 32 ............................. TTCAGTGAGCCATAAAACCGCAGCTTATTTGC 31589 29 100.0 32 ............................. AGGCTAAAGATTCAGGACAAAGCGATCAACGC 31650 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 31711 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCACCAGCCATACCTGAACCTAAAACGCTGGGTGATAGCGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCTGCGCTTACGTGGACGGCTCGCAATCTGGTTACTGGAAGTGCGTGCCGGTGTTTATGTTGGTGATACATCAAAACGTATTCGGGAAATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGACGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCGCAGCTCTCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCTTTATTCCCAAGATTCCAGTTTGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCGGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //