Array 1 2070-1311 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNH01000366.1 Gilliamella apicola strain AM6 NODE_366, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 2069 26 100.0 35 .......................... CCGGGTAATAATTATTTTTTTAAATTACTTTTAAA 2008 26 100.0 35 .......................... CCTTATTCCAATGGTGACTCAAGGTGATATTATAC 1947 26 100.0 35 .......................... CCGTTCGGGTTCTATATTCATTTTAGTTATGTCTG 1886 26 100.0 35 .......................... CCGGAAACACTCATCATCTTTCATTCGATGAAAAG 1825 26 100.0 35 .......................... CCGTTATTGACATATAACATTATGTGGTGATAATC 1764 26 100.0 35 .......................... CCGCCCACGCCTCTATTGCTAGCTGCGCCTTTGGT 1703 26 100.0 35 .......................... CCGGAATATGAGAATGAGAATTTTATTAGTTTTTA 1642 26 100.0 35 .......................... CCGATTGCAGAATGTCGGTTTTCCACTCTAGCGTT 1581 26 100.0 35 .......................... CCGTGTGTGGGCGCGCAATGGTAAGAGGTGGTGCA 1520 26 100.0 35 .......................... CCGTTATACAACGCCCAGATTGGGCTAGGAGAAAA 1459 26 100.0 36 .......................... CCGTTATTACTAATGTTTTAGCGTTAGCGTGCTCCC 1397 26 100.0 35 .......................... CCGATTACTACAGAGATTACTGCAAAGAATACTAC 1336 26 92.3 0 ......................A.G. | ========== ====== ====== ====== ========================== ==================================== ================== 13 26 99.4 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : AAAAATATAAACTTATTGGTAGAGTCTCGTAGAATCTAATTTTAATTTCCATCAATTTTAATTAATCAAATAAAAACATAGTTTTATCGATTGTGATTTTAATGAAAAATAACCTAAAAAATCGGTAGAAATTTGACGGTCAATATTTTAATTATAAAACAATATGTTATAATTGG # Right flank : CCGTATACTAAATTATTTATAATAGGATTTTATAAAGCTCTCGCTTGAGGGCTTTTTGTCTTAGGATACTTATCCGATTTATTATAAGTTTTGTTGAATTTGCTCTCCTGCTGTTCCTCCTTTTTGTTACTAATTCAGTTTAAAATTTTTAACAATGCTAAAACCCACTTGGTCCATATTTACTCATCAGACCTTGAACTAACCACGTTTTATTACGGTTGTGAATTTCTGTTTAATGGTAAAAAGGGTAATGTTGATTTTATTAGGTGCGGTTATATACTCAGAAAAATCAGGAACGGACATCTTGTATAGAATGGGAGTATGTCATGTTTGCTGAAAATTTTTGGATGTCATTTGCAGTGTTAGCGCAATGGTGGACGTAAAGAGTACAAAAAGCGTGTGACGTTTAATGAGAGAGGGCGATTTGCATCATCTCCAGCCGTCTATCGGTGAGGTTAATGGCGATTATTCTAATTTCCGTTACTTATAATTTACTAAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8246-7668 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNH01000039.1 Gilliamella apicola strain AM6 NODE_39, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 8245 26 100.0 35 .......................... CCGTTAGTAGAACTAAATGGTATGTTTTACAAAAC 8184 26 100.0 35 .......................... CCGTTAATAGGAAATTTAGGGCAGGATCCCGAAAT 8123 26 96.2 35 ..................A....... CCGCAACTAACAGAGCATTTTACACTAGACGAATT 8062 26 100.0 35 .......................... CCGCTGTTTCTATGTAATTTCTAACAGTTTTTCTG 8001 26 100.0 36 .......................... CCAGATGAGTTAGATCGTATTGCCTGGTGCGACAGC 7939 26 100.0 35 .......................... CCGGGCGAATGGGTAAAACTCCGGCGACTGGAGCT 7878 26 96.2 35 .............G............ CCGCTCTGCACTGCGTTTTTGATTGTATATTGTCG 7817 26 100.0 36 .......................... CCTGACGCTAATTGTGTTTGATTATATAAATATTTA 7755 26 100.0 36 .......................... CCGGTTATATATTTGTGCCAAGTTCCGCCGTTCAGT 7693 26 88.5 0 AA......................T. | ========== ====== ====== ====== ========================== ==================================== ================== 10 26 98.1 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : GCTTATTGAAGAAGTTTTGTCCGCTGGTGGTATAGAACCGCCTCTACCACCTGATTATGTCCTGCCACCAGCTATCCCAGAACCTCAATCTTTAGCCGATAGTGGCTTTAGAAGCCGCTAATATGAGTATGTGTGTTGTGGTAACTGAAAATGTTCCACCTCGATTACGTGGTCGTTTAGCAATTTGGTTACTTGAAATTAGAGCCGGAGTTTATATCGGTGACATATCAAAACCAATAAGAGAAATGATATGGCAACAAATTGTTAAACTTGCAGAAGAAGGCAATGTAGTCCTTGCTTGGGCGACTAATACAGAATCAGGATTTGACTTCCAAACTTATGGCGCTAATAGAAGGGTTCCGGTAGATTTAGATGGACTAAGATTAGTCTCTTTTTTACCTATTGAAAATCAATAGGTTAACGTTCTTTAAAAAATTAAAAAAATTGGTAGATTTTTGGGATGCCAATAAATCTAAATAAAACAACCATATATATTTAGA # Right flank : TAGTTAGATTAATTAGGTAAAGTAATGAAAGGCTTTTAGCTACAGGGTTATAAGCATATACTCTCCTTAAAGTCTTAATAACGTTTTAACTTTATTTCTTTACTAATATAGGCATATATTCACTTTTATATTTTTATGAATATAAAAAATCGAATGAGATTTATTAAAAATCTTAAATAGTTATGAAGTTCATTTTAAAACATGAAAATTGAAAGTAACTGTTAACTAAACTAATAATCAAAAATAGCGTACAATAGTGCGTTATTAAACATATGATCATCATAAATAGTTTAGGAATTTAGCATGACAGGCAAATTTATTGTCATTGAAGGTCTTGAAGGTGCGGGTAAAACGACAGCAGTTAATACCGTTGCTCGTATTTTGAATCAATATAACATTTGCGATTTACAATTTACTCGTGAACCAGGTGGTACACCCATTGCTGAAGCATTACGCAATCTTATTAAAAATGGTTTGGATGATGAACCTTTGACGGATAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 17-718 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNH01000333.1 Gilliamella apicola strain AM6 NODE_333, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17 29 100.0 33 ............................. TGCTTCCCACTTTTCTAAAAAATGCCTGCGCAA 79 29 100.0 32 ............................. CGGTTATGTTTAGTTAACTATTTGATTTAAAA 140 29 100.0 32 ............................. CGCACCATACAGAAAATCGCATTCTGCACGTT 201 29 100.0 33 ............................. GAGTAAAGGAAAATAAAATGAAATGAAAAAAAC 263 29 100.0 32 ............................. CCAATCTGCCGGCTTTTTAAAATAAATCGATA 324 29 93.1 32 ............TG............... ACACAGCAACAGGTACGAGCTGATTAGCACAA 385 29 93.1 32 ............TG............... CCTGAATTTAAAGACGGTTTTCATCCGTGCGC 446 29 93.1 32 ............TG............... GGCGCCTCTGAATCTATAGAATCATGCCACTA 507 29 93.1 32 ............TG............... TGTGCATTGAGTTATGTTCTATGTCTCGTTTT 568 29 93.1 32 A...........T................ TAATGAAATGTTGGCAAGTGCAGGAATTCATA 629 29 96.6 32 ............T................ TCAACTGGACATGGTGATAATAGATTATTAAA 690 29 96.6 0 ..........................T.. | ========== ====== ====== ====== ============================= ================================= ================== 12 29 96.6 32 GTGTTCCCTGTACACACAGGGATAAACCG # Left flank : GTATGTTATAATTGGGG # Right flank : GGGGATGCGTCAATATTACATAGCATTTTTTGGCTATTCAAAAAATCGCAATTTTATATTTCATTGTTTATCATTTATTTAATTTCATGAAAAATATAAATTTATTGGTAGAATTCCGTAGAATCGAATTTTAATTCCCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATACAGATTTTGGTAAAAAATAGCCTAAAAAATCGGTAGAAATTTGGTGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGGGTGTTCCCTGTATGCACAGGGATAAACCGCCATGAAAGAAGAAGAAGTTTCTCTTGTTTACGTGTTCCCTGTATGCACAGGGATAAACCGCGAGGCTATTTGGAAAAAGTGGCTTGAGCTAGGTGTTCCCTGTATGCACAGGGATAAACCGTCGTGGTAATTACAATTGCGTAGATTTAGAAAGTGTTCCCTGTATGCACAGGGATAAACCGGCGTCATTGATTTGAATTTCAA # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTACACACAGGGATAAACCG # Alternate repeat : GTGTTCCCTGTATGCACAGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 984-1928 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNH01000333.1 Gilliamella apicola strain AM6 NODE_333, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 984 29 100.0 32 ............................. CCATGAAAGAAGAAGAAGTTTCTCTTGTTTAC 1045 29 100.0 32 ............................. CGAGGCTATTTGGAAAAAGTGGCTTGAGCTAG 1106 29 100.0 32 ............................. TCGTGGTAATTACAATTGCGTAGATTTAGAAA 1167 29 100.0 32 ............................. GCGTCATTGATTTGAATTTCAATCATTTTGAA 1228 29 100.0 32 ............................. GAACAAAACTAAACGTTCTCCACTAAAATTGA 1289 29 100.0 32 ............................. TAAACTTGCTTTTTTTGGTGTGAATTAACTGT 1350 29 100.0 32 ............................. GCGTTTGGTAATAGTATCAAACCTAATTTGAA 1411 29 100.0 32 ............................. ATTTTATCAGAACATTTTAAACGTTCGGAATT 1472 29 100.0 32 ............................. GAGGCATTGATTAGTAGTATACTGAAATCGCC 1533 29 100.0 32 ............................. TGAGCTTCGGGAATTAGGCACGCTTCCATTTC 1594 29 100.0 33 ............................. TTTTATCTCAGGGATTGGAAACGTTGGATGAGG 1656 29 100.0 32 ............................. GGTTAAACGAGCCAAGGAGGCCGCTGATCATG 1717 29 100.0 32 ............................. TAAAAAAAATAATAAAAAACGAAATTTTAGCC 1778 29 96.6 32 .....................G....... TTAGCGCTAGGTAGATTAAAATCAGGTCAGAT 1839 29 100.0 32 ............................. ATTGCTCGTGCAAGGATTTAAGCTGATTCATC 1900 29 79.3 0 A............T.....A...T..T.A | ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.5 32 GTGTTCCCTGTATGCACAGGGATAAACCG # Left flank : GAATCTATAGAATCATGCCACTAGTGTTCCCTGTATGCACAGGGATAAACCGTGTGCATTGAGTTATGTTCTATGTCTCGTTTTATGTTCCCTGTATACACAGGGATAAACCGTAATGAAATGTTGGCAAGTGCAGGAATTCATAGTGTTCCCTGTATACACAGGGATAAACCGTCAACTGGACATGGTGATAATAGATTATTAAAGTGTTCCCTGTACACACAGGGATAAATCGGGGATGCGTCAATATTACATAGCATTTTTTGGCTATTCAAAAAATCGCAATTTTATATTTCATTGTTTATCATTTATTTAATTTCATGAAAAATATAAATTTATTGGTAGAATTCCGTAGAATCGAATTTTAATTCCCATCAATTTTAATTAATTAAATAAAAACATAGTGTTATAAATACAGATTTTGGTAAAAAATAGCCTAAAAAATCGGTAGAAATTTGGTGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGG # Right flank : AATTGTAGACATGAACTTTAACCTTACTGAGTTACAGTTGTTTCGTATTTGTAAACAAACATTAGCCATTGCCATAGACCCGTTTAATGATTTGCGAGAAAAAACAGAATCGCCAGTATTAAAACGGTTATGCTTTATCACCATTAAAGAATTACAGGCGCACAAATGTGATTCGTCAAAACTCTTACTTTCTCAGATATCCGTTCATAACCAAATATCTATTTACATTCATTAATATAAAAAATAGGATTTATATAGTTATATTGTATAAAATATTTCCATATTAAAAATGAATATAAAGCACTTGAGAATATAGCATGATTCAACAAATAGCTGTTTTGGGTGATGTAACCAATTATGGTGGTAGGATTATTACAGCCTCAGGGAACGGTTATTGTGGTATTGATGGTATCGCCTTATTGGGTGATTTAGCATCTTGTCCCAAATGTAGAAGTACAGGAAGAATTATAGAGGGAGCAAACGATTTTGTTATCGACGGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 255-708 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNH01000512.1 Gilliamella apicola strain AM6 NODE_512, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 255 26 100.0 35 .......................... CCGTTGTTTTTTATATGATTAGCATGTTTTTGCAA 316 26 100.0 35 .......................... CCGAAATATCAAAAAAGTTTTGTTCCTCATCATTA 377 26 100.0 35 .......................... CCGAAACGGGATTAGCAGAACTGGAACAAAAGGCA 438 26 100.0 35 .......................... CCGCCCATTGAAGATAGATTTTCTGATTATAAATC 499 26 100.0 35 .......................... CCGCAGGTTTGCCCTGATAATTTGCTACAAAATCA 560 26 100.0 35 .......................... CCGGTCGATGGATTTAGAGAGCGTCAAGTTGACAT 621 26 100.0 36 .......................... CCGCAGTGCTGATATCGTCGAAAGCGTTAACTTAAC 683 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ==================================== ================== 8 26 100.0 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : CAATATTACATAGCATTTTTTGCTATTCAAAAATCGCAATTATATATTTTATTGTTTACCATTTTTTTAATTATATGAAAAATATAAATTTATCGGTAGAATCCCGTAGAATGTAATTTTAATTTCTATTAATTTTAATTAATTAAATAAAAACATAGTGTTATAAAATGTGATTTTAATGAAAAATATCCCAAAAAATCGGTAGAAATTTGACAGTCAATATTTTAATTATAAAACAGTATGTTATAATTAGAG # Right flank : CCAATATATTCTATAGATAAAACTCGTTATTATTAATAAGAACTATATTGCTAATTTAAGGATAATTTTTCAGGTAAGCGTTTGAGAATGATAACTTAAAAAAATTATAAAAAATCTTCTAAAAAAGGGATTTAATTATCATAAATCAAATGATATGGTTGATTTCTTGAAATTTCGGACTTTTCCCAAATCTTATTGGTCTCACGATAATTTTTTGTGTATCAAACAATTTATTTTGTTAGAAATGGTACTCAAATATGATTTATTGCCAATTTCGAAATTAACCAAGAAAAAACAATTATAATGATAAAACATTTAGAAATTACATCAAACTATTTGCTAAATCTAAAACGTCGAAATTGAGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.20,-10.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1654-1259 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNH01000401.1 Gilliamella apicola strain AM6 NODE_401, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1653 29 100.0 32 ............................. TGCCGGGAATAATTCGATGATCGCGTTCGACC 1592 29 100.0 32 ............................. CTCCTCCCGCTTTTTTATTGTAAATATCACTC 1531 29 100.0 32 ............................. AAAATAAATAAAGAATTTCGATTCATAGTTAT 1470 29 93.1 32 .T...........A............... GCAGGTGTCGCAGGTAAAGCATCGATGACTCT 1409 29 82.8 32 .T...........AT.....A.......A GATGACGACAAATCAGCTAGTGGTGCATTATC 1348 29 96.6 32 .A........................... CGTTACAAATCCCCCACATTTTTAATAGTTCA 1287 29 82.8 0 ............CA............ATA | ========== ====== ====== ====== ============================= ================================ ================== 7 29 93.6 32 GCGTTCCCTGTATGCACAGGGATAAACCG # Left flank : ACATTTTATTGTTTTTTATTTTTTAATCATATGAAAAATATAAACTTATCGGTGGAATCCCGTGGAACCTAATTTTAATTTCCATTAGTTTCAATTAATCAAATAAAAACATAGTGTTATAGAATGTGATTTTAATAAAAAATAACCTAAAAAATCGGTAGAAATTTGACGGTAAATATTTTAAATATAAAACAGTATGTTATAATTGG # Right flank : CAAAATTACTACAAACCGCTCGCGTGGCGGTTTTTCATTGCCAAACTTTATTAAATAACATACCATTGCAAAAAAATAAAGAATAAGGAAATGGTATGGAAAAGATTATTTATTGTTTGTTGTTATTCCCATTTTTTGTATTTGCTGATGATTTCTATAATTGTAAATATGCAATGGGTATTGAAACAGAAGAAAATCTAAACTATTTGGCGAATGGAACAGTTCGGGTGACCAATGATAGATTTGTTGCTCAAGATTTAACACACAAGGAGCATAAATCGCCTAAATTTACAGAGTTTACAGAATTTGCAGATAATTTATCTATTGCAGAGGACTCAGAGAAAGTATATGTTCTTGCAAATGATAGAACAAAGTATGTGATTACGACTAAAAAAAGTAATCTTGTTTTTAAATGGGGTAATTGTACTCTTGATTTATCTATTGACTTCGAGAATGAAAAATTTGGCAACAAACCAGTAAATTTTTTTCCTAAGATAAAA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCTGTATGCACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTATGCACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.80,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 174-686 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNH01000587.1 Gilliamella apicola strain AM6 NODE_587, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ==================================== ================== 174 26 80.8 35 A..........TCG.G.......... CTGAATTTGACGTAATACGTAGTGGTTTATCTCCT 235 24 84.6 35 A....T..--................ CCGTGTTTCATCAATTAATAATAGCCTAATATCAG 294 26 100.0 36 .......................... CCGACATTAATACATATGATTTAAGTTTATTCGGAA 356 26 100.0 35 .......................... CCGGCCAGGATGCGATGCGGTGAGGTTTTCAAATA 417 26 100.0 35 .......................... CCGTGTATAATGATTCTCATAGATAGGCGAGGAGG 478 26 100.0 35 .......................... CCGGTTGTTGTAACCAACATAAATAATTAGAACAA 539 26 100.0 35 .......................... CCGGCGACGGCGTCAGCAAATCTAATTTAGATGAT 600 26 100.0 35 .......................... CCGAAATACAGTTTATATATAAATGGTAATAACGA 661 26 84.6 0 A......T.....GG........... | ========== ====== ====== ====== ========================== ==================================== ================== 9 26 94.4 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : AAGAGATAGGATATGAATTTTCTGATATTAATGAAATTAATAATTTGATAAAAAAAGGGAAAAAGTTAGTGGTTAGAGCTGAATATTCAAAAACTAAAGATTTTGAGTTCTCTCTAGCTGGCTTTGCAAAAGCATTTAAAAAATTGCAAAAAAATTGTTCTACTAACTAATCAA # Right flank : TCGGCGA # Questionable array : NO Score: 5.98 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 36-364 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNH01000140.1 Gilliamella apicola strain AM6 NODE_140, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 36 26 100.0 35 .......................... CCACCATTAAATCCAATCATAATACGATTTAATGC 97 26 100.0 35 .......................... CCGAGATATAACCGATTTTATATTTCCGAAACAAA 158 26 100.0 35 .......................... CCGGCGGTTGTAATACACGCGTTACAAACCGACAT 219 26 96.2 35 ............C............. CCGGCGGTTGTAATACACGCGTTACAAACCGACAT 280 26 100.0 35 .......................... CCGCGCCATGTTATTCTCACGTCGTCATATGCCTG 341 24 88.5 0 ........--..C............. | ========== ====== ====== ====== ========================== =================================== ================== 6 26 97.5 35 ATGTTCCCTGTATACACAGGGATAAA # Left flank : ATATTTTAATTATAAAACAGTATGTTATAATTGGTA # Right flank : ATCGAGGATGCGTCAATATTACATAGTATTTTTTAGCTATTCAAATAATCACATTCTATATTTCATTGTTTACACGTTTTTAATTATATGAAAAATATAAACTTATCGGTAAAATTCCGTAGAATCTAACTTTAATTTCCATCAATTGTAATTAATCAAATAAAAACATAAGGTTATAAATACTGATTTTGATAAAAAATAACCTAAAAAATTGGTAGAAATTTGGTGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGTATGTTCCCTGTACACACAGGGATAAACCGTTTTTAATAATTTATTTGTCATGTTATGTCTCATGTTCCCTGTACACACAGGGATAAACCGGGAAATCGTGGAGTACATAATTATGACGATTAATGTTCCCTGTACACACAGGGATAAACCGCAGAATTAACAAAATCTAGGGCGCTGGTACCGATGTTCCCTGTACACACAGGGATAAACCGACGACAATCTCTGGAGTTTTG # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTGTTCCCCGTATACACGGGGATAAA with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 631-1086 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZNH01000140.1 Gilliamella apicola strain AM6 NODE_140, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 631 29 100.0 32 ............................. TTTTTAATAATTTATTTGTCATGTTATGTCTC 692 29 100.0 32 ............................. GGAAATCGTGGAGTACATAATTATGACGATTA 753 29 100.0 32 ............................. CAGAATTAACAAAATCTAGGGCGCTGGTACCG 814 29 100.0 32 ............................. ACGACAATCTCTGGAGTTTTGCGGGACGGTCA 875 29 100.0 32 ............................. CCAGTTACACCAATAGAGACGTTTACGGCGTT 936 29 100.0 32 ............................. TTATCAATGTTACCCGTACTAAAAAAGCCTTT 997 29 100.0 32 ............................. CAACCTCAAGTAAGAATTCCAACCAATAAAGA 1058 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 8 29 99.6 32 ATGTTCCCTGTACACACAGGGATAAACCG # Left flank : TAACCGATTTTATATTTCCGAAACAAAATGTTCCCTGTATACACAGGGATAAACCGGCGGTTGTAATACACGCGTTACAAACCGACATATGTTCCCTGTACACACAGGGATAAACCGGCGGTTGTAATACACGCGTTACAAACCGACATATGTTCCCTGTATACACAGGGATAAACCGCGCCATGTTATTCTCACGTCGTCATATGCCTGATGTTCCCTACACACAGGGATAAATCGAGGATGCGTCAATATTACATAGTATTTTTTAGCTATTCAAATAATCACATTCTATATTTCATTGTTTACACGTTTTTAATTATATGAAAAATATAAACTTATCGGTAAAATTCCGTAGAATCTAACTTTAATTTCCATCAATTGTAATTAATCAAATAAAAACATAAGGTTATAAATACTGATTTTGATAAAAAATAACCTAAAAAATTGGTAGAAATTTGGTGGTCAATATTTTAATTATAAAACAGTATGTTATAATTGGT # Right flank : AGTAGGATACACTAGAGTATCGAAGATTGAACAGTGTACCCGTCTATACATGGATTCTTAATTAAGAAAGTTCTGACAAGTCAATTTTCATATCCCATGCCTACTCAGGGGGATTTTTATTCTGCAAACTTATTTTTGTGATCATATCGATTGTAATGGATAGCATCACTTATTAAGTAGTTGTAAATTTCATCTACAATTTCTATCCCATTTTTTAAGTAATCCGCTTCACGTTTTTTGCCACGTTCACCAGGAAAAAAGACTTCACTATTACCTTTAGCAGGTTTAACGTGTTTTAGTTGATCTAGCATGGCAGACATGTTCTTTTTGAACGTTTCAAGACCGATAAAATAATCGGGATTGATAACAATATGCAAATGTCCAAGATCGCGTCCTTTAGACAAGTCGGCATACATGGATGAGACGTTTTTACCAAATGGTACACCTAATAAAATGCCTGACAACACATCCACCATCATCATTAACCCATAACCTTTGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTCCCTGTACACACAGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTGTTCCCTATACACATAGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.80,-8.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //