Array 1 2972051-2970282 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAJTL010000001.1 Escherichia coli strain UMB120101_06 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2972050 28 100.0 32 ............................ TGAAAGTTGACGCCAGCGGCGACCCGCGTCAC 2971990 28 100.0 32 ............................ AAGGCAAGTGATGGCGAAATTACCCGCGCAAT 2971930 28 100.0 32 ............................ TCAATGCTGCTAAACGCGCACATGAAGAGTCA 2971870 28 100.0 32 ............................ GCGCACGGCGTGGCGACAGAGAGCACGCCCGC 2971810 28 100.0 32 ............................ AGTTCGGCATGAGCAGCTCCTCTGTAGTCAGA 2971750 28 100.0 32 ............................ AGCCAAAATAATGCGTCGCTTTCTGACATTTT 2971690 28 100.0 32 ............................ TCGAGCGTACCAGGTTTACTGTCGTCATATAC 2971630 28 100.0 32 ............................ ACAGAACAGGCGAAAGAAAGGGTACGCAGTAA 2971570 28 100.0 33 ............................ TGGATTCCAAACCGCCCACCAACAAAAACAGGT 2971509 28 100.0 32 ............................ GATACGATCGAATTTAGTCACTGAATACCCCC 2971449 28 100.0 32 ............................ GGGTTGCGCAATGGGCTGGCCGACGAACGCGG 2971389 28 100.0 32 ............................ AGGTCGTAAACCCCATTTTCAAAACCAATCAG 2971329 28 100.0 32 ............................ TGTGGCGCTGATGCGTCTGGGCGTCTTTGTAC 2971269 28 100.0 32 ............................ GCGCGCAGTGCCTGATAATCAATTTTGCTCAT 2971209 28 100.0 32 ............................ TGTACGGCAGTCTATTAGCTATAGGAGCCTGA 2971149 28 100.0 32 ............................ AGCGTTCGGTGAATATTTTCCGCCCGAGTCCA 2971089 28 100.0 32 ............................ TGGGGATATGCGCGGGATTTGGCGGTGGTTTA 2971029 28 100.0 32 ............................ GTAGAAGCTCACCATCAGCGCGTCTTTTTTGA 2970969 28 100.0 32 ............................ ACATTTCCGCCGTTATGAATCGGTATTCCATA 2970909 28 100.0 32 ............................ ATCCTGGCAGAACAACCAGTCAGCAGATCCCC 2970849 28 100.0 32 ............................ AATTCGTGCTGGCGCGGGTCGTGGCATCACGT 2970789 28 100.0 32 ............................ TGACGTCGCGTGAATATGACGCCGTTGTTTTT 2970729 28 100.0 32 ............................ TCATTCTGTACAGAAAGATCAACCATAATATT 2970669 28 100.0 32 ............................ CGGGGAATGACACGCCGTTAATAGTGGAACTT 2970609 28 100.0 32 ............................ GCTTGGGGAGTATTGGGAATCGCTCGGCGGGA 2970549 28 100.0 32 ............................ GCAAACGGAATTAGCAGCAGCATGATCAAAGA 2970489 28 100.0 32 ............................ GACGAATGCCGCACACCAGGGCGTCTCGTCGT 2970429 28 100.0 32 ............................ CTGGAGGCGCTCACACTCACGCGGAGTGAGAC 2970369 28 100.0 32 ............................ GAATATTTTGGAAAAATAGCTATCAATCCGGG 2970309 27 92.9 0 .......................C-... | T [2970290] ========== ====== ====== ====== ============================ ================================= ================== 30 28 99.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CCTTTTTATGCGCGCCATGCCCACCGCATACAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTGAAACGGTCAAGAAGAATTTATATAGATTGATTTGTTTGGTTACGCAATGAACACGCTGTTCGCGGGACGGAGATTATGACCGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAACCGACCCTTTTTCTAGGTTGTAATGTAACTCATTGATTTTCTTATTGCTATTTTGAAGTCTGGAAAAAGGGTTTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : CTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 2981678-2981108 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAJTL010000001.1 Escherichia coli strain UMB120101_06 scaffold00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2981677 28 100.0 32 ............................ AGCAGCTTTCCAGCGAGCGCGGTTAACTCACT 2981617 28 100.0 32 ............................ AAAACGGCGGGTTTTTTACGCGTGTGGCTGCA 2981557 28 100.0 32 ............................ GTTAACCGTTTCACACTTAACACTATGAACCG 2981497 28 100.0 32 ............................ CTACAGCAACTGATGCAACGGTAAGCGCGATC 2981437 28 100.0 32 ............................ AGCAGCGGTGGCGAACCGCGCGTTGTTGATTT 2981377 28 100.0 32 ............................ AGAACTCGAAATTTATCGCGGGACTTTTCAGC 2981317 28 100.0 32 ............................ AGGCTGCTGGCGCTCTCGTTGTTAACGGCAGC 2981257 28 100.0 32 ............................ GTTCCACGCGGATATCTGTAATTTCCAGCAAA 2981197 28 100.0 32 ............................ CTGAACGTTGAAGAGTGCGACCGTCTCTCCTT 2981137 28 85.7 0 ....................T...C.CT | C,A [2981111,2981114] ========== ====== ====== ====== ============================ ================================ ================== 10 28 98.6 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCTCGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTCAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : ACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //