Array 1 2001495-1998295 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPAF01000008.1 Klebsiella pneumoniae strain JHTS006 tig00006004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2001494 28 100.0 33 ............................ TGTCATCCAGTTCGCTGATTGTTGCTTCCATGA 2001433 28 100.0 33 ............................ CAATTCATAAACAGGCCTTTTCTCTGTCGTAAG 2001372 28 100.0 33 ............................ TGATGAATGATGACGGGCTGCTTGAGTGCGCCC 2001311 28 100.0 33 ............................ TAAGGATATGCAGTCAGGAGGAGGGATTAGCGT 2001250 28 100.0 33 ............................ TCCTTACGGATTTGCAGGCCCATAGCAGCCCAG 2001189 28 100.0 33 ............................ CATTGTTCACATGGACGGGTAACTGGTTATTTA 2001128 28 100.0 33 ............................ TCTTGTGCTTGCTGGTACCCCTGCGAGTTGCAA 2001067 28 100.0 33 ............................ CCTGCAGGCTGGGCTTTGTGGGTACAAGTGACG 2001006 28 100.0 33 ............................ TAAATAGCAAGTTTGTTTGCGGTCTTCACTGCT 2000945 28 100.0 33 ............................ TGTTATCGCATGGTACGCCAATGCTGGTGGGCG 2000884 28 100.0 33 ............................ CGATAAAGAACCCCCTCAGCGTCTTTGGTCAAC 2000823 28 100.0 33 ............................ TTATGAGCAAATGCCCTAAGTGCAATGGCACAA 2000762 28 100.0 33 ............................ TTGCATCCTGCCTACATGTGTCTTCAGGGTAAT 2000701 28 100.0 33 ............................ TAGAACAAAGCGAGGGGTGCCTGGGGATGAAGT 2000640 28 100.0 33 ............................ TGACACGCTTTCATCGTCAGCAATGAATGCCAC 2000579 28 100.0 33 ............................ TGATAGCTGATTGCCAGTCAGGCGATTGATGGC 2000518 28 100.0 33 ............................ TAGATGCATTTTGCTCAAGTCTACTGTGATTAA 2000457 28 100.0 33 ............................ CCAGCCAGCCATTGCAGATTCATAATCTGCACG 2000396 28 100.0 33 ............................ TACAAATCATTTCGTGGTGATGACGCCGCCACT 2000335 28 100.0 33 ............................ CGCGACGACCTCGTCATCCTCCCCGCTGCGGCT 2000274 28 100.0 33 ............................ TACACCCAGCTCTTTGACGCAAAGGCTCAGGAG 2000213 28 100.0 33 ............................ TCCTTGGTTCGTTTCTTCTGATGTTTGCAAGGC 2000152 28 100.0 33 ............................ CTGGTTGACGTATGCCGTGATGCTGCTGGTAGG 2000091 28 100.0 33 ............................ TACCCCGTACCCGACCCGCTCTAAAGTGACCGG 2000030 28 100.0 33 ............................ CAGGTTCGTACCGGGGCCGTAGAGGTCTGTTTC 1999969 28 100.0 33 ............................ TTTTGCACAAGTATAAAAAGTGTAATAAAAATC 1999908 28 100.0 33 ............................ CACCACGATCTCTATCACCGACGCGCCGACTAC 1999847 28 100.0 33 ............................ TAGCGGTGGTGGCCATCGATAACCTTCACGCCC 1999786 28 100.0 33 ............................ CGCTGTATGCCCCCCATCCTTCGCAAGCACTAC 1999725 28 100.0 33 ............................ CGATGACAACTTTGCCTACTTCGCTGCGCTGGC 1999664 28 100.0 33 ............................ TTCCTCTTCTTCCTGACAATCAGCGCAGCGCTG 1999603 28 100.0 33 ............................ TGCGGGTGGATGACAATAACGCCTGGCGCGCCG 1999542 28 100.0 33 ............................ TTCTTCATTAAGCCAGGCAGAGCCGCCATGAAT 1999481 28 100.0 33 ............................ CCATTTCGATCTGGTCGTAGACGTCTTCGCGGT 1999420 28 100.0 33 ............................ TTCGATGGGGTCCGACTATATCCGGATAGTAAA 1999359 28 100.0 33 ............................ TCAGGGTGTCGAATTTCTTCTTTTTCCTGGTAT 1999298 28 100.0 33 ............................ CTCAGATATCGAAATAGCCTGGCGTCAGGCAAT 1999237 28 100.0 33 ............................ CAGATCAAAGCCTGGACTGAGCGTCTTAGTGCG 1999176 28 100.0 33 ............................ TCGCGAAATTCCCCGCTGCGACCTCTTATAAAT 1999115 28 100.0 33 ............................ CCAAGCTGGTGCACGCGGGCAATTCTGGCGGCA 1999054 28 100.0 33 ............................ TCAGCGGATCTGGCATACGTGCAAAAAATATCG 1998993 28 100.0 33 ............................ CCTGTTAAGGATGACGCGGGGAAATGGGTTATC 1998932 28 100.0 33 ............................ TCGATGGCGAGCTGCTGGTGAAAAAGTCGATAC 1998871 28 100.0 33 ............................ TCCAGGCCAGATCTGTTTGGGTTGGTGTCGAAG 1998810 28 100.0 33 ............................ TTGAACCTCCCGCATCTGGTCAGGCAGGTTATC 1998749 28 100.0 33 ............................ TTGAACCTCCCGCATCTGGTCAGGCAGGTTATC 1998688 28 100.0 33 ............................ CAACCGGCACCGTGGCTGCAGGTGACGATTCCA 1998627 28 100.0 33 ............................ CACATCGATGAGGACTTTTTTAAGTCTAATCTG 1998566 28 100.0 33 ............................ TAATGGATCATCTATCACCCTGGCAAATATTTT 1998505 28 100.0 33 ............................ TGAAGGTGAGCGCCAAAAGGAGTGGAAGCATGC 1998444 28 100.0 33 ............................ CGGCTGCGTTATCCGGCAGCACGAACTGGACCT 1998383 28 100.0 33 ............................ TGACCTTAGAGGCTTCACTCAGTGCCACTTTTT 1998322 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 53 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTGCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCGCAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : TTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATGTGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATAAATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCTTTTGGCTTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCATATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGTTACAAATTGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2010765-2010248 **** Predicted by CRISPRDetect 2.4 *** >NZ_QPAF01000008.1 Klebsiella pneumoniae strain JHTS006 tig00006004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2010764 28 96.4 33 .............A.............. CGGCTCTTTTTTATCTCCTTCATCCTTCGCTAT 2010703 28 100.0 33 ............................ TGATCGGCGTGCCGTTTGTTGGACCCGAAATAG 2010642 28 100.0 33 ............................ CGTCATCAGCGCCTTGTTCCAGCGGCGACCACC 2010581 28 100.0 33 ............................ TATCGTGCAGAGTCACAACCTGACGGGATTATC 2010520 28 100.0 33 ............................ TCGTGCATGGTGAGGATTCTACAGTCGCACCAT 2010459 28 100.0 33 ............................ TACCTCCCGGCGTCCGCGCCAGGGCGATCACGT 2010398 28 100.0 33 ............................ CCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG C [2010393] 2010336 28 92.9 33 ............T.T............. TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 2010275 28 89.3 0 ............T......A.......T | ========== ====== ====== ====== ============================ ================================= ================== 9 28 97.6 33 GTCTTCCCCACACGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTCGACGGCGCAGCGCAGGATAACAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTTCGCGAAGCCACGGAAGGCAAGCGCCAGGATGACGCGCTACGTTCTGGGGATGACAAAAGCGTTTTACCCCCGGCTGCGGGCCGGGCAGGCCAGTAGGGTAGACCGGTCCAGGTCAGCAGCAAATCGACGGTGGTTATATGGTGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAATTGTTGTAAATCTGGCGTTTTAATACGCCGCTAAACACAATATGCTGGT # Right flank : CGCCTTTCAAGTGACGACAAGTCACGTCTGTGCGCATTTCTCAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGACATTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACACGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //