Array 1 516488-515198 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065947.1 Pseudomonas aeruginosa strain PAS6 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 516487 28 100.0 32 ............................ TCGGCTTCCCTGGCGCGCTTCTCAGTGGCTTC 516427 28 100.0 32 ............................ TGGAACGGGTGGTGGCGGCGATGGTGATGGCG 516367 28 100.0 32 ............................ ACAGACAGCACTCTGCGAGACGACATGAACAT 516307 28 100.0 32 ............................ ATCGGCGGGGATCGATCGGGTCTCTTTTCGTG 516247 28 100.0 33 ............................ GCGCAAGCGGGCAACATAGAACTTTCCACTGAT 516186 28 100.0 32 ............................ TGCAGACGCTCAACAGCGCGAACCACTACACA 516126 28 100.0 32 ............................ CCCTCGGAGTTCGAGGTATCAACGGTGATGCG 516066 28 100.0 32 ............................ ATTGCGAAGGCACAGCGCGGCTTCTGCGATGT 516006 28 100.0 32 ............................ ATGCCGAAGAGGGTCTTCCGCTGAAAACCGAG 515946 28 100.0 32 ............................ TACAGACCAAGGTCCGTGCGCTGCTGGCCGAG 515886 28 100.0 33 ............................ TACGCCCTCGTTTGGGCCGCCATGGGCCTAGAA 515825 28 100.0 32 ............................ TGCAGCGCGTGGACCAGGCGCTGGAGGGTACG 515765 28 100.0 32 ............................ ACGCAAAGCCTGTCGGATGCGGTCAAGTCCGG 515705 28 100.0 32 ............................ TTCTTGAGTACGGCGACCAGTACGGTTTTTGG 515645 28 100.0 32 ............................ GACGAGGAAACCCGAAACGCCGTCTCCAGCCT 515585 28 100.0 32 ............................ AGTACCACGTCGACGCTGTGCATCTGCATCGT 515525 28 100.0 32 ............................ TGAACGGAATGCCTTTGCTCGGCAGCGAGGCT 515465 28 100.0 32 ............................ AACGGCGCCGGGGTGGTGGTGGCCTATCCGAT 515405 28 100.0 32 ............................ TGGGCGAGCGCCTGGGTGTCCAACATCGACGG 515345 28 100.0 32 ............................ TTGGTGACGTCGCTGACCACCCTGATCGGCGC 515285 28 100.0 32 ............................ ACTGCCCGCCGGTCGAGTGGTAGCGCATAAGG 515225 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 22 28 100.0 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATGCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5916720-5917707 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065947.1 Pseudomonas aeruginosa strain PAS6 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 5916720 28 100.0 32 ............................ AACCACAATCCAGACCCGCGCTACCTGCGCGG 5916780 28 100.0 32 ............................ CGATGCCGGGTTCGACGGCAGCCCGATACAGA 5916840 28 100.0 32 ............................ ATGTAGCGCCGCATGACTGGGCCGAGTGACGC 5916900 28 100.0 32 ............................ TTCACTAGAGCAGCCAATCAGATTTATGTCTT 5916960 28 100.0 32 ............................ ATGTGGCCAGCATTCACTTCAGGATCCAGGCC 5917020 28 100.0 32 ............................ TCCGGGACTTCATCCGCAGGGTGGTCGTGCTC 5917080 28 100.0 32 ............................ TGCGGCGGCCGCAGGCCGAATGCGAAGCCCGG 5917140 28 100.0 32 ............................ CGGAGAACTGGGTCGCGCCCCGCCCGACAGCC 5917200 28 100.0 32 ............................ TGATACGCAGCTCAGGACGCAGGCCAAAAACA 5917260 28 100.0 32 ............................ CTGGAGCGTGCCAAGACCCACCTTGGCATGGA 5917320 28 100.0 32 ............................ TGGACCTGGGCAAGCTGATGAAGGGCCAACTG 5917380 28 100.0 32 ............................ TGCCGCCGCTACGACTTCCAGACCATCACACC 5917440 28 100.0 32 ............................ TTGGGAAGTACTCAAGGATCTACGCCGCACTG 5917500 28 100.0 32 ............................ ATCCTGAGGCTCAGTTGAGGTGATCCATGGCG 5917560 28 100.0 32 ............................ AGGACGGCGACTCGACCCTGGCGGTTCGGCTG 5917620 28 100.0 32 ............................ TTGAGCACAACCGGCTGAGCCAGCTGGTTGTC 5917680 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 17 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : GACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCATCACAAGACCTTTCGCGTCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAACTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCTCGCTTGGAAGCTCACGCTCCTCACACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 5927099-5926232 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP065947.1 Pseudomonas aeruginosa strain PAS6 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5927098 28 100.0 32 ............................ CACCAGCACCGAGTTGGACGCCGACACCGAGC 5927038 28 100.0 32 ............................ CGGAAGAAACGGCACTGCACCGCAGTTCGGCG 5926978 28 100.0 32 ............................ AAGACGCGATGACCCGGGCGATGATCCACCGC 5926918 28 100.0 32 ............................ AGATTCGCCGCGTCCAGGCCGTCCATTTGCGC 5926858 28 100.0 32 ............................ TGATCCATCACCGCCTTGACACCAACAAAGGC 5926798 28 100.0 33 ............................ AGGGATCGCCGTCGAACGGCGACTTGCCCGGAA 5926737 28 100.0 32 ............................ ACTTGATGAACTTGCCGACGCTGGGCGCGAAG 5926677 28 100.0 32 ............................ TCCTAGTTCTTCGCCCAGCCGGAAACCGAGGC 5926617 28 100.0 32 ............................ TGGACGGCCGCAAGACAGTCACGCGGCGAGTG 5926557 28 100.0 32 ............................ ACAACATCAATCGCCTGATGCTGGGGCACCTG 5926497 28 100.0 32 ............................ AATGCGGTCCTGCGCATCCGAACTGGTAAGTG 5926437 28 100.0 32 ............................ GACCCCCGGAGGACCAACCGTGGACAACGACA 5926377 28 100.0 31 ............................ TCCTTCGGCTCCGCCGGCCGGATCGCTGCAT 5926318 27 92.9 32 .....................A..-... TGTCGCGAAGTTCATAAGCGGGCTTAGGGCGA 5926259 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 15 28 97.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ATGAGCCGGGCGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTGGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGGCACCAGTCGAAACGAAGTCCCTTTCCATGGGACCTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //