Array 1 147626-145664 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIRK01000001.1 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1248 (=ChDC F113) F113_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 147625 30 100.0 36 .............................. TTCTACCTGCTATTTTTTTATCACTTACAACTAATT 147559 30 100.0 36 .............................. AAAAGACAAATATATCTATGGTCGTAGAATGTTCAA 147493 30 100.0 37 .............................. GGAATAGAAATATTTTCAATAACTACATTTCCAATTT 147426 30 100.0 36 .............................. ACTTTCATTGCCATTTTTATTTTTTCTTCTAGTTCT 147360 30 100.0 37 .............................. TTTCTTTCTTTTGCTCTTATTGTACTTTCTGCAAGTT 147293 30 100.0 35 .............................. ATTGTAAATATTTTATTATTTTTAACTTTAATGAA 147228 30 100.0 36 .............................. CCCAGAGTTTTCATATAAGATTTTAGAAGAAAATTT 147162 30 100.0 35 .............................. AATTATGCCATAAGGCTATTATTATTTTAGCATAA 147097 30 100.0 36 .............................. GGAGAAAATAAAGATCCAAAGGTTCTAGCTAAATGT 147031 30 100.0 38 .............................. GGATTAATTTAGTTTTCTCCATCTTCCTCATTTCCTTT 146963 30 100.0 37 .............................. TATCTCTATCACTATTTGAATAAGTATATAGACTGGC 146896 30 100.0 36 .............................. GATGTTAAAAGATGAAGCTAGTGCATTACAAGATGT 146830 30 100.0 38 .............................. GAGGCATACAATTTAACTTGTTTAGTTGCTACTATTTT 146762 30 100.0 37 .............................. GAGTTTGGTACTGTTATAGATTGAGCATTAGATGCTA 146695 30 100.0 37 .............................. GGAATAATAAATATTTTCTTACTAATCTTGCCTTTAA 146628 30 100.0 35 .............................. TGAGTTAGGACATGCTATATTACATGCTTCTAGTA 146563 30 100.0 37 .............................. TGCTTTAAAGGGGGCTAAATGATAATAGGCTATGTTA 146496 30 100.0 37 .............................. ACTGTTATTACAATTAAACTTGTTAATAAAAATATTT 146429 30 100.0 37 .............................. GCAAGACCATTTTGGAGAACAGCAATAGATGCTAAAT 146362 30 100.0 37 .............................. CTATTTCTCCAACAGTTTTGTCCTTGTTCTTTTCAAG 146295 30 100.0 37 .............................. AGAGAAATAGGTGTGTTTGTTAACGATAATGGGCAAG 146228 30 100.0 37 .............................. TAATATTTTTTTAAATAGCCCCCTAACTTCCCCTAAA 146161 30 100.0 35 .............................. TGAAAGAAGCAGAAAATAAAGAGGTTCATGTTCAT 146096 30 100.0 36 .............................. CAAAAAGTTAGAATATGGATAGACAATGCAAAAATA 146030 30 100.0 38 .............................. GAAAATACCTTTAATGGGTTTTATTTAGGTTCTGGATA 145962 30 100.0 36 .............................. CCAACTTTTAAAATATTCTTCCATAACTTCTCTAAA 145896 30 100.0 38 .............................. CCATTTCTATGTACTTTTGGATAACTTCAATAGCATCT 145828 30 100.0 38 .............................. TTTGTTATTATAAGACCAATAAAATCTGTACAAAAATC 145760 30 96.7 38 .............................G GTCAACAAAAGAAAATATTGTTATTCCTAATGTAGGTA 145692 29 90.0 0 .......................AA-.... | ========== ====== ====== ====== ============================== ====================================== ================== 30 30 99.6 37 ATTTATGTATTTCTATATTAGAATTTAAAT # Left flank : AATCTTTTCAAATGTGGTGGTGATAAAATGTATGTAGTTGCAGTGTATGATATTTCATTGGATGAAAAAGGTAGTCATAATTGGAGAAAAATTTTTGGAATTTGTAAAAGATATCTTCATCATATTCAAAATTCTGTCTTTGAAGGAGAATTATCAGAAGTTGATATTCAAAGATTAAAATATGAAGTTTCAAAATATATTAGAGATGATTTAGATTCTTTTATAATTTTTAAATCAAGAAATGAAAAATGGATGGAAAAGGAAATGCTAGGTTTACAAGAAGATAAAACTGATAATTTCTTATAAAATTTATTGTCTACCTCTCATAATGTAAAATTACTGGAAGATTGACAAAAGTCAAAAAAGTCTTTATTTATAAATAAATTTAAGAAAATAAAAAAAATTTAAGAAATTAAATTTTTTTATTTTTTACTAAAAAACTTATATTGACAAAAAGATATTAAAAAAGTATTATATGGGAGTAGTTTTTTTAGGTAGCT # Right flank : ACAGAAGAAAGGGATTGAAAAATAAAGACTTAATGCTGTTATATAACAAAAGAATAAATAAAAAGTTAAAAGGATTAACTCTAGTTTTTTATATAAGTTAATCCTTTTTAATAAGTTAAATTAAATTTATTCAATTTTTTAAGGGGGAGTACATTTTTTATTGTGTTAAGTATAGCTTCATAAAGTAAACTAAGAATTAAGTATTCATAAAGTAATAGAAAAATTAAAAAAACGAAATCCAACTAAAATATTAATATAATGAACACAAAAATTTAAGATAGAAAATAAAAATTATCAATTATTAAATTAATAAAATTTTATTAAAAATTAAGCGAATTTCACAATAAAAATATTGCATTTAATCGTAATTGGTGTTAATATATACTTAATAAATTTGAAAGATAAATTTAAAGTTTTATCTACTAAAAATAGGGAGTGATTATAATGAGTTTTTTAGGGCAAGTTAGAAAAAAAGCCTTACAAGCAAACAGAAGAATAGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTATGTATTTCTATATTAGAATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:90.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 2 1115565-1116202 **** Predicted by CRISPRDetect 2.4 *** >NZ_NIRK01000001.1 Fusobacterium nucleatum subsp. polymorphum strain KCOM 1248 (=ChDC F113) F113_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ========================================== ================== 1115565 38 94.7 42 TA.................................... AAGAATGAAGCATATCTATCAACAGATAATGATTTCTTCAGA 1115645 38 100.0 33 ...................................... CCCCTAGAATAATTTACCTGGAAATTTTTACAG 1115716 38 100.0 35 ...................................... TTTGATGTATGATGATTTGATGTCGCAGTTTCCAA 1115789 38 100.0 37 ...................................... ACAATTCTTACACTATCAAGAGTACCACCAACTACAA 1115864 38 100.0 38 ...................................... TTTTTATGCTTTCTCCCATAAAATATACTCCAGCCATT 1115940 38 100.0 35 ...................................... TTTGATGTATGATGATTTGATGTCGCAGTTTCCAA 1116013 38 100.0 37 ...................................... ACAATTCTTACACTATCAAGAGTACCACCAACTACAA 1116088 38 100.0 39 ...................................... TAGATACAGCAAGATAATCCGAATAAGTATCATAGTTTT 1116165 38 97.4 0 T..................................... | ========== ====== ====== ====== ====================================== ========================================== ================== 9 38 99.1 37 AGTTTTAAACCTTGTTATAAATGGATGACCTTCAATAC # Left flank : ATAACTTTTTCAGTAATCTTATAAAGAATTTTACCAAATCTCTTTTTTGTAATTCCTATTTCATCATTAGCTTGATGTGTTTTCTCTAAATTATTTTTATCATAGACATAATATGAATATATACTATTATCAATACGTGAATCAAAGTAACTTTCACCTAAGTAATGCAAGTTTATTAACTCTTTCTTTGTTAAATTTTTTTCTTCTAATACTAAATTAATTTCTTTTAAAAATTTCTTTAATTCCACTATATATTCATCTGAATCTTTTCTCATATCTTTATATCTTTCAATTACATCTATTAGCTCCTTTACAGAATCTTTAAGTTCAATAAAATCTTCTTCTACAAAATAATTCTTTTTTCCAAAATTACTGAACAACATAGTTATTCTCCCTCTGTTACCTTTTTTCTATTGTATTGTATTTTTTATTTTAAATCAATTATTTTTACATAATAAAAAATGGAATCCTTGGATTCCATCTTCCATGATATTTAATTT # Right flank : CCCTTACCAAAGGGATGAATGTCGTATTTATGTTAGAAAGAAGTCTTTTTTATATGGTGGCAAAATTTGAACATTTTTCCGTAATTCACGGATTCTTAACCTTCTATATTAAATTTTTATTACAGTTTTTTTGCTTTTTTTTAAAATAGTGAGCATTTTATTCTTTAATACAAATCTAAATATGAAATGTTAAAAAATTGACCTTATAACCTTTTTTCTACATAATTTTTTTCTTATTTTTATATTTTACAATATTTTTATTAACTTGTAAACTATAACTTATTATACATAATTTTATATTAAATTTCAATATATTTTTTTATAAAAAATGGAGTTGTTAAACTCCATTTCTTTTATATCAGCTGATATTTAATTTTTATTATGCTATATATTTTTGTATTGCTTCTAGTTCAACCTTTTTAAACTCTATATTTGTTATAGTGCTTTCAGATTTCTTTATTTGTTTTCTTATTGTTTCTATCCAAGCATCATAACTTTCA # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTTTAAACCTTGTTATAAATGGATGACCTTCAATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA //