Array 1 519651-518048 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL870929.1 Kingella denitrificans ATCC 33394 SCAFFOLD1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 519650 33 93.9 32 CT............................... ACCCCTTGGATTACCGCATTAACCGAATCAAT 519585 33 97.0 32 C................................ CACGCCCATGTTTTCCAATGCGGCAAGGTCTG 519520 33 93.9 32 CC............................... ACACAGCACCAGTTGCAACAGCGGTTGCGCTT 519455 33 93.9 34 TG............................... TGCGGCGGCTCTATCACGGATTTTCTGGATGGTC 519388 33 97.0 33 .T............................... CAAAGGCAACCTTATCCCTTTGGCGAATATCAA 519322 33 93.9 32 GC............................... CGCGCATGGTATCAGGCACGGCGGCCAAACCG 519257 33 100.0 33 ................................. ACGCACAGCAACGGCGGCCAGGTCAAATCCATC 519191 33 97.0 33 .G............................... AACATCCGCGCCAGCCAATCGCGCAGCCAGTCC 519125 33 100.0 32 ................................. CAGCGCCATGTCTTTGTTATAGCCGATGTACC 519060 33 97.0 34 .C............................... GAAGTCGATTTGCACAGCCTTATCCGTATGGATG 518993 33 93.9 33 CG............................... CGTTTCTTATCCGCCATCCCGCTCACCATTTCC 518927 33 93.9 32 CT............................... AGCCCTGTTTTTTTTGCCATGGTGTCAATCTC 518862 33 93.9 32 CG............................... AGTTTGCCCGGCTCTTGGGTTTGGGCAAGGTG 518797 33 97.0 33 G................................ TTCCAGTGTTACCATATTTCGTCCTTTCAGCTG 518731 33 93.9 31 CC............................... ATGATAAAACCCCCGAAAGGATAAGACTTTC 518667 33 93.9 33 GG............................... GCGGGTTACGGCGATATGGGTATCGGTTTGCGC 518601 33 93.9 32 CC............................... CTAGTCGAACTCTCTTTTGAACTGGGTTTGCC 518536 33 93.9 31 GC............................... TTCAGGCAGTAGAGCATGGTTTAAGAGGACA 518472 33 93.9 33 GC............................... ACTGAAAAACTGCGTGCACACAACATGGTTTTG 518406 33 97.0 32 G................................ TGGCAGCGCTACCAATGCGACGTACTGCCCGA 518341 33 100.0 32 ................................. TGGTTTGTGGCAGCTGGCCCACTGCGCGGAAA 518276 33 100.0 32 ................................. AAAGGCGATAACAGCGCCATCCGCCTGTGCGA 518211 33 90.9 32 TG....................T.......... CGGATACCGTCAAAAGTAATCGTTGTCATACC 518146 33 90.9 33 GC....................T.......... AACCGCTGGATATTTTTACGCACATCGTTAATC 518080 33 78.8 0 GT...C.......A......C.T.........T | ========== ====== ====== ====== ================================= ================================== ================== 25 33 94.8 32 AACAGTCGCCTTCGGGCGGCTGCGTGTTGAAAC # Left flank : CTGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGAAGGGCAGGCAAGGTTGCGGCGCGTGGCGAAATTGTGTCTGGACTACGGCGTGCGCGTGCAGTATTCGGTGTTTGAATGCGACATCGCACCCGACCAGTGGGTTGTTTTAAAAGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCACGGCGCGAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATGGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTCGCGCTTTTCTTGAGAGCTTAGCGAAATTGGGGTTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGG # Right flank : ACCCTGATTCGCGCCATTTTGAACAAATATGCGACCAACCACCTTCGGGTTGCTGTATTGAAACGACATGGAGGCGGATAAATTGGATAAATAAGCGTGTACTGGAATATGAAAATTTGGTGTAAAGGCAGATAATGCGTAGCCACTTCTAGATAACTCAGTATTAGGGCAAATAATTTAACTCGACACTTTAGCTGAGCAGCATGCAGCTTTTTGAATATCCCAATATCCACGTTTTTGCATAATCGAAATTGATATATATGTTATATGTTAAGGTGGAATCAGATAGGTACTAAAAGTCTTTTAGTTATTAAAATAACAGTATAATAATATTTATATAGCTAATATTAATAAACTTTTATTATCTCTAAAACAGATTTTTAGATATTAATAATGTTATTTAATATGTTTTTCATATCATGTGCGTAGATTAACCAGATAACATTCTCAATATAAATGTGCAGGCTGCTTTTTCACGATTTAAAAAGCAGCCTGCACTC # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.22, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AACAGTCGCCTTCGGGCGGCTGCGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //