Array 1 8131-7652 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAOZ01000018.1 Helicobacter pullorum strain NAP10B8 contig018, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 8130 36 97.2 37 ......................A............. AAAAACCCTTTTAGATACTTCTAAAACTGCATTAAAA 8057 36 100.0 39 .................................... CTCATAGTTAGGACCTACTTTATCTAATCTAAATGTAGC 7982 36 97.2 35 ......................A............. AGAGTGTAGCTGCTAAAGCCGTCACTATTCAACTG 7911 36 100.0 39 .................................... CTAAAAGAGGCTCACAGCTTACAAAGATTGTAATATCCA 7836 36 100.0 38 .................................... GGAAAGTTAGTTACTATAAACATACCATATTCATTTTT 7762 36 100.0 39 .................................... TGCCAACTATCACCCTTGAAGAGTAGAGTATAGTTGGAG 7687 36 94.4 0 .....................TA............. | ========== ====== ====== ====== ==================================== ======================================= ================== 7 36 98.4 38 ATTTAACAACACGACCCGATTCGAGGGGATTAAGAC # Left flank : AGTCTATGAATGCCAACTGACCAAAAAAGCACTCAAAGAAATAAAAACCAATCTCAGAAAAATACTCAATCGCAAAACCGATTCAATCCGCCTTTATCGAATCTGCAAAAACTGCAACAACAAAAGCAAGAGCATAGGCAAAGGAAAAGAACCATTTGCTCCCATAGATTTGAACTTCTAGCGCTCAAAAGAGATTTGCGAAGTTTTCATTTTTTTAAGCCCTACAACACCGATAAATACGCACCCCAAATAACTTAAAATTAGCTAAAATTTAGCAAATCATACTTTTTTTGCATTTTTAGCAAACCAATTTTTTATCCAAACCACACAATTATCGAGATTAGCAAGCATCCAGCTTCCACAATTTTTGCCCAAAATTTGACATTTGCGAAGTTTTTACAAAAAATCTCCCACAAAGCCAAAAAATATGGGATTAAATAAAGATTTAAGTTTGCTTAATATAAAATCTCAAAATCAAACGAGCCTCGTTGTCTCCAGCT # Right flank : AAATTTGCTTCTCCAAAAGGAGGAACATACTATGATTTAACAACACAACCTATTTCAAAAGGTTCTAATTTTCCAAAGATATTAGTATCCATCATTTAAAATTTATGATAATATAGCGTTATATTTAAGCCATACTTTTAAGGAATTCATTTGATAAAAGAACGCACTTTTGCCCCTTTATTGCCAGATTCATTTCAAATTCTAAGCCACAAAGAAAAAAAGGCTTTTTTAAAAAAAGAAACCATACTCAAGAAAAAAATCCACTATTTTGACTGGACAGCAAGCGGATTAGCCGCAAAATGTATTGAAAAACGAATAAGAAAAATACTACCATTCTACGCAAATCCACACTCAGAAAGCTCCTCACATTCCAAAATCATAGGGGAAATTTACGAAAATGCACGCAAGAATCTCAAAATATTCTTTGGGCTTGATTCTAGTTTTGCCCTCATTTCTTGTGGTTTTGGCTCAAGTGCAGCAATCAAAAAATTCCAAGAAAT # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTAACAACACGACCCGATTCGAGGGGATTAAGAC # Alternate repeat : ATTTAACAACACGACCCGATTCAAGGGGATTAAGAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.00,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 1-1622 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAOZ01000090.1 Helicobacter pullorum strain NAP10B8 contig090, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 1 36 100.0 30 .................................... CCTATTGTATTAAAACCTGCAGGGCATTTA 67 36 100.0 30 .................................... GTGGTTAAAAACAAAAACAATCCAACGCTA 133 36 100.0 30 .................................... ACTGAAGCAGAATCTGAAGCTAAAGACAAT 199 36 100.0 30 .................................... TTTGCAACTTGATAACCAAGACCACCTAAA 265 36 100.0 30 .................................... CTTAGAGTTATCGGAATCTGTATATTTATA 331 36 100.0 30 .................................... AGCGGTTTGTGATATCTATATTCTTGGTAT 397 36 100.0 30 .................................... CGCTGAAGCGGAGACCTCGATGTTTTTCTC 463 36 100.0 30 .................................... TAAACATTTTCAATTCACTTAAAAAGCTAT 529 36 100.0 30 .................................... AGCACTAGAATAACTAGAATCAGAAGGCGT 595 36 100.0 30 .................................... TGAGACCACGCTCATAAACATTACTTACAA 661 36 100.0 30 .................................... AATCAAGATATTAATTATATTGTGGAATCT 727 36 100.0 30 .................................... ATCAGCTTGTTTAATATCAATTAAATCCAT 793 36 100.0 30 .................................... AAATTACAGAAAAAGAAAGTTACGCTATTC 859 36 100.0 30 .................................... TCAGAAACCTTTTCATAGAGTTTCCGAAGT 925 36 100.0 30 .................................... TACTTTTAGAAATATTGAAAAGGAGCTTAT 991 36 100.0 30 .................................... ATATGGATACATTTTATCTTGATAGTAATA 1057 36 100.0 30 .................................... GGCTATAATGTTTTTATAAGTGAATACGAT 1123 36 100.0 31 .................................... TATGATAACGATACTCTTGATATCTATCAGA 1190 36 100.0 30 .................................... CTGCATAACTTTGTGTTTGAAAAGCCATTA 1256 36 100.0 30 .................................... CCTATTGTATTAAAACCTGCAGGGCATTTA 1322 36 100.0 30 .................................... GTGGTTAAAAACAAAAACAATCCAACGCTA 1388 36 100.0 32 .................................... CATTTAGAGATTCCAAACTATACACCCACAAA 1456 36 100.0 30 .................................... ACTGAAGCAGAATCTGAAGCTAAAGACAAT 1522 36 100.0 30 .................................... TTTGCAACTTGATAACCAAGACCACCTAAA 1588 35 97.2 0 ...................................- | ========== ====== ====== ====== ==================================== ================================ ================== 25 36 99.9 30 GTTTTAGTCCCTTTTTAAATCTTTCTATGCTAAAAT # Left flank : | # Right flank : | # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCCTTTTTAAATCTTTCTATGCTAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 7433-7798 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAOZ01000065.1 Helicobacter pullorum strain NAP10B8 contig065, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 7433 36 100.0 30 .................................... ATAAAGGCAGACACATTTATACTAATTCTG 7499 36 100.0 30 .................................... AAATCCTAATGAAAATCAATCACAAGGCAA 7565 36 100.0 30 .................................... GATATGGGACTTTTCAGCTCTGTCGCTGGT 7631 36 100.0 30 .................................... ATACCAAGAATATAGATATCACAAACCGCT 7697 36 100.0 30 .................................... TATAAATATACAGATTCCGATAACTCTAAG 7763 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 100.0 30 ATTTTAGCATAGAAAGATTTAAAAAGGGACTAAAAC # Left flank : AGGGGGAGTATCCGCTGTCTTATTATCACAGAGAAGCAGTTTGATTCTATGGAGATTTTGCTAGGTGGGGTGGGATTCAATGAGATGATGAATGAGCCAAGAAATCTCGTGCTTTTTGGGTTTGATGAGAAAAAGGGAGAGTATGTGTATGTGGATAATGATAAAGATAGCGATGAAGAGAAGTTGTTGCAAACAAAATCAAAGAAAACAAGAAATATACAAGGAAGTTTATTTGAGTTTTGAAGATAGAATGGTGTGCTACTTAGGATAATATGTGTAGAATAGTAACAATATAGGGAATATAAAAAACAATAAAATGTGAAAAGTATTATGTAATATAAAGTAAAAAAGTCTTGGCAAAAAGGGATTTTTGGAGGTTTTTAATCTCACACCCTGCACCTTTACTCCTAGTATTGCCAAGAAATACTAGGTAGGTTTATTTTAGTCCCTTTTTAAATCTTCTTTTGCTATTGTAGCATAAAATCCCAATTTTTTGGTCT # Right flank : | # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAGCATAGAAAGATTTAAAAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 18-909 **** Predicted by CRISPRDetect 2.4 *** >NZ_MAOZ01000093.1 Helicobacter pullorum strain NAP10B8 contig093, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 18 36 100.0 30 .................................... AGATTCCACAATATAATTAATATCTTGATT 84 36 100.0 30 .................................... ACGCCTTCTGATTCTAGTTATTCTAGTGCT 150 36 100.0 30 .................................... ATAGCTTTTTAAGTGAATTGAAAATGTTTA 216 36 100.0 30 .................................... AGAATCTAAAGCAATATCTAAAGCGTTTCC 282 36 100.0 30 .................................... AGAGAGGGAATTAATAGTCAATGGAATTGC 348 36 100.0 30 .................................... GTAGAATTCTTGAGAAAACACAAGACGCTA 414 36 100.0 30 .................................... CGCGTTAGATTTACAAATTCAACAGGTAAA 480 36 100.0 30 .................................... AAAATGATTACATATAACACAACGCTAAAA 546 36 100.0 30 .................................... AATAGCAATGTAGCTAATTTTGCAAGTGTA 612 36 100.0 30 .................................... GCTACAAAAGGCTAAATTAATAAGCAATTT 678 36 100.0 30 .................................... TTTGGTATCTTAAAAAGCTATGAAAATTCA 744 36 100.0 30 .................................... TATATCCGATTAGACCCATTTGGCTATACG 810 36 94.4 30 .....................T....A......... TGGGGAAGCTTCTCCCTTTAGGCTTTGATG 876 34 80.6 0 .....................-...TA-..CG..G. | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 98.2 30 ATTTTAGCATAGAAAGATTTAAAAAGGGACTAAAAC # Left flank : ATATTAAACAAGCTGATA # Right flank : CTTCAAACCATTACTTTATTGTTTTTGATATAATTTAGGTTTTTTAAAATATTTTAAATGATGCAGTTTTTGATTGCTATAAGATAGGTTTGCTATATTTATATTTTGGATTTGTGCGATAAGCTAATGTGTGGTGAAAAATTAAGAGTTTTAGATTGTCTTATCTTTTGGGGTTTTTCGTAATTTAGACTAAAAAATCAAGGATAACATACTACAAGATTCAAACATATTTTTTAAGATTTGAAGGAAAAATCATGGTATATACTACTTTTTACAAAAGTCCTATTGGCACGATACTTTTAGCAAGTAAAGATAATAGGCTTATAGGTTCTTGGATAGAAGGGCAGAAATATTATTTAGGAAATCTTAAGGAATCTACACAAGAAAAAGACGATGAACCTATCTTATTGCAAACTAAAATATGGTTAGACAGGTATTTTAATGGAGAACAGCCTCATACTTTTGAATTAGACTTGGCACCTAATGGAAGTGTATTTGCT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTAGCATAGAAAGATTTAAAAAGGGACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //